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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012014 ID=TCONS_00012014|Name=TCONS_00012014|organism=Clytia hemisphaerica|type=transcript|length=3704bp
CAACTAGATAGTTTGAAAAAATCTGTTTGGTCCCATAAGCTGCCATTACA
CTATGAATTGTTTATGGTAACACCGATTTAGAAAAAAAGCAATAATCaat
tataaaatgattttggGCATACATTAAACTATACAAATCagcattgggct
tttccagaaaaaattgcCTATGGGGGAAAGAGGATATAAAActatttgga
aatttacccccctaaaaataaaacttcataaaattttgaacaaatacTAG
AATATTTTAATAACTTGTCTGTACAaagtaccgtaacttggtctaatgtc
gacatccctcttctaatccCAACATCCTTCTTAGAAAGGTCTTTGCTTAG
CGAccagagaggaaaaaatcttttatctatcagtgattctgaccttacta
ttattcctatctctaaaacagcGTGTCGGagttagaagagggatgtcgac
attagaccacgTGATGCAAAATAAATGATCACATCGATCGAATACTTTTT
AACTTAGCATAAACCACGTGACCAACACCTGTTAACAATTCATCATTCAT
CAATTCCAAAACCAACAAAATTTTCGAATATTGAAATTCCTCATCCTCAA
GTCTCTTATTCAACCAATGGTTCAAAAACATGACCATACAaattggaaat
aatttttcttcgttcaaaacttttaaagcaGGTGGTAAAAATTGGTTACT
CTGAATTAACAATTTTTTGTATTCACCAATCTGGTTGGAAATGGTGGATC
TGAAATTACAGAACTGCATACCAAGCCATTTGCTGAACAAATTCAATAAG
CCATCCTGGTAATAGAGGTTCAAGTTACTATGAAGGTTCTTTGGGATGTT
TGATTTCTTGATATTAGCATACTCCAGCATTAGGTGAAAAGGGAAAATCC
CTGTGGTTGTGGAAATAACCAGGCTAAGTTCATCCTTGAGTAGATAGAGA
AAGGAATCAACTAGACTGTACactttgaagaagaaaatatcgTCTAGATA
TTTACTGACGTATTCTTGCAATATGTTAGACATGGATTCTAGAAGATTGA
GTGAACTCTGATGGTGACTGTTGGAATCCACNTATTCTTGCAATATGTTA
GACATGGATTCTAGAAGATTGAGTGAACTCTGATGGTGGTTGTTGGAATC
CAAGGTAGGTATTGTctgtaattttcttttcttgttttctGTTTGTGTAG
CCATGCTCATAGCCAATGGTTTCGAGATCTTAATATCAGATTCAGTTTGA
ATGTGAGCATCCTTTGTTTCAATAGATGTCTGTGTACTTCTAGTGAGCAT
CACTTCATCAAGTTTCTTCCACATTTCTTGGTTATTCTTCTTTAAATTTA
AATCTGATGTATATTCTACCGGTTGAATGTTGCCTTGTTTATGGCTAAAT
GAATCACTGCAAGATTTTCCTGGTATTTCAAATATACTTTTGTTGAGGTC
TTCCAATGTTGGTATTAATACATGTTTGGATATATGGGACTTATCAGAAA
TGATCGCCTCCTTGGCATTTAATGCAGGTTGACCATCCTGTAGAAGAAAA
TCACTATGTTGTTTGTCAATACATTTACAACAGCAAATAGTTCGATTTTC
ACCAATAATTTCAGGTTCAAACTTCTCATTCAATATATCCTCcatatcaa
ttttcaaaaattgtggtAACTTGTCTGTGATATCCATAGCTGACCATTCC
TCAAAACAGCTTTTGACAATCGCAATTTGCTCTTTGAAATTATAATAATT
GAATACAACATAAAATAACCCTTTCATATCATAAAAGTAAGATTCTGATA
CGTTTACTGCTGTACCATTTAGACGTTCTGGAAAGACCAGTTTACAGCAA
TGACCATATTTGGAGAGGTTAAAATGTTTACAAGCAATATTTGGTGAAGC
TACACTTGTATTCTTCAAGACATCCAAACCAAAGAACAGTATTCTTTTTA
GATTCTCTTTCTTGATGATCAAATACCTCAATATTCGTTGACCAGTATTC
ATTTCTGACATCGATATCTTAGTTGAGGGCTGAGAAGCCATTATATTTAT
GTTTATCTAGAATAGATAATCAAAAGATTTATTTAAATATAATAACAATA
ATTTGTGAGTTTATGTTCATTTCGTTTATGAAGGGGAATGtaaaagtctc
aactttttccttattttcatgACATTGACGTTTTTCATCAACGGTGACTA
TTTTGACATACTTAAATAAGCAAATAACATGCTGAGGGCCTTAAGAATGA
TGTAAGAAAATAGGAAACAAATGGCAAAAATAGTATAATAAAAACGCaga
caaaaaaagtgaagtaAAAAGAAGAGAGATTGATTGAAACCAGAAATTCG
AATAAATTGATCAGAACATTGTGAATaacaaaacaaagctttcaTCATAA
ACATTATAACACTACATCTAGAATCAGTTTAATCCAAATCcaaattaaat
ttagaaaaccagtttttacgTGAAAAATCAACAGTGCCATGCAAAGTTTT
CGCATTGATGCAATTTTCTGCAGAATCTCCTAGTTTTCCTTCAAAATATT
GTATTCCAGTGGATTCTTCTCGCTTCATGCCATCAACAAGCAAATCTTGT
GGCACATCAATATAAGCACCAACCGCATCCAGAAATGCTGCTAGAGAGTC
ACCAAGACCAATACTAATATTACCTTGATCACTTTCCATGAAAATATGTT
TACATGATTCAACAGTAACATTAATATCACCTTGCTGTGTGGTGATATTT
GAGCTACCAGCTAAAGTTGAGATGGATATATTGCCAGACTGTGTATTCAA
ATCTGATGATCCATGCATATCACCAATAATTATAGATCCAGCAAAGCTGG
TGCATTTCATTTGCGGACAATAACAACTTTTAATATCAATACTACCATTT
TGATTATCAATAGACAGATTCTTTGCTTGAATTTTACCAAATTTGGCTTC
ACCtccaagaataaataatccatTTCCTAATAAACTTTTACACTCTAAAT
CTCCAGCCACATCAATATCAACAGTGCCAGATTTGATTTTTCCTAGAGTA
CAATTACCAGTAGATttgattttcaacatttttccttCAGTTTCTTTCAC
CGATACCTGTTCAGATTCAATTTCAATATCATAATTATGTGGGATTTCAA
TATGAATTGAGAAATCTCTGTCATCACTTATTACATCTAGGTTTTGAGAT
ACAGAAAGTAAATTCTGTTGATTGCAATACTCAgcttttgcatattttcc
aagtTCCAGATCCAAAATTTCGTGACCATCTTTATTGTCTACCATCTTGA
TAAACGCCATGTCACCATTAGGAACATCGTGTGGATTGATACATTGGACA
ACAACAGGAATTTTTGGACATGCGTACTTCAAACTACCAAAATGGTTCAT
GTTTTGAAAAGTAACTTTAGTTCTTTGGAGACACCTCAtccattttgttg
aatttgagaATACTCTTCTACTGTGGCAGAatatcattttattattttct
tgtatttttataattattctCTCTGAAAATATAAGAAAAGAGAAGGAAAG
GGTATTAAAGATCTTAAGCACATTGGAGTAGGAATCAAAGAACAATTTGC
CTATAACAAATTATTTCCCTCACAGGTTCAGGGCTCCCTGAGGCCAAAAA
AGTTAGTCTTGTTTATTGCAAACATGATTATTGTGatttttactttcact
tttg Run BLAST on NCBI protein sequence of TCONS_00012014-protein >TCONS_00012014-protein ID=TCONS_00012014-protein|Name=TCONS_00012014-protein|organism=Clytia hemisphaerica|type=polypeptide|length=520bp
MASQPSTKISMSEMNTGQRILRYLIIKKENLKRILFFGLDVLKNTSVASP
NIACKHFNLSKYGHCCKLVFPERLNGTAVNVSESYFYDMKGLFYVVFNYY
NFKEQIAIVKSCFEEWSAMDITDKLPQFLKIDMEDILNEKFEPEIIGENR
TICCCKCIDKQHSDFLLQDGQPALNAKEAIISDKSHISKHVLIPTLEDLN
KSIFEIPGKSCSDSFSHKQGNIQPVEYTSDLNLKKNNQEMWKKLDEVMLT
RSTQTSIETKDAHIQTESDIKISKPLAMSMATQTENKKRKLQTIPTLDSN
NHHQSSLNLLESMSNILQEXVDSNSHHQSSLNLLESMSNILQEYVSKYLD
DIFFFKVYSLVDSFLYLLKDELSLVISTTTGIFPFHLMLEYANIKKSNIP
KNLHSNLNLYYQDGLLNLFSKWLGMQFCNFRSTISNQIGEYKKLLIQSNQ
FLPPALKVLNEEKLFPICMVMFLNHWLNKRLEDEEFQYSKILLVLELMND
ELLTGVGHVVYAKLKSIRSM Run BLAST on NCBI transcript from alignment at sc0000134:338730..342433 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012014 ID=TCONS_00012014|Name=TCONS_00012014|organism=Clytia hemisphaerica|type=transcript|length=3704bp|location=Sequence derived from alignment at sc0000134:338730..342433 (Clytia hemisphaerica)
caaaagtgaaagtaaaaatCACAATAATCATGTTTGCAATAAACAAGACT
AACTTTTTTGGCCTCAGGGAGCCCTGAACCTGTGAGGGAAATAATTTGTT
ATAGGCAAATTGTTCTTTGATTCCTACTCCAATGTGCTTAAGATCTTTAA
TACCCTTTCCTTCTCTTTTCTTATATTTTCAGAGagaataattataaaaa
tacaagaaaataataaaatgatatTCTGCCACAGTAGAAGAGTATtctca
aattcaacaaaatggaTGAGGTGTCTCCAAAGAACTAAAGTTACTTTTCA
AAACATGAACCATTTTGGTAGTTTGAAGTACGCATGTCCAAAAATTCCTG
TTGTTGTCCAATGTATCAATCCACACGATGTTCCTAATGGTGACATGGCG
TTTATCAAGATGGTAGACAATAAAGATGGTCACGAAATTTTGGATCTGGA
acttggaaaatatgcaaaagcTGAGTATTGCAATCAACAGAATTTACTTT
CTGTATCTCAAAACCTAGATGTAATAAGTGATGACAGAGATTTCTCAATT
CATATTGAAATCCCACATAATTATGATATTGAAATTGAATCTGAACAGGT
ATCGGTGAAAGAAACTGaaggaaaaatgttgaaaatcaaATCTACTGGTA
ATTGTACTCTAGGAAAAATCAAATCTGGCACTGTTGATATTGATGTGGCT
GGAGATTTAGAGTGTAAAAGTTTATTAGGAAatggattatttattcttgg
aGGTGAAGCCAAATTTGGTAAAATTCAAGCAAAGAATCTGTCTATTGATA
ATCAAAATGGTAGTATTGATATTAAAAGTTGTTATTGTCCGCAAATGAAA
TGCACCAGCTTTGCTGGATCTATAATTATTGGTGATATGCATGGATCATC
AGATTTGAATACACAGTCTGGCAATATATCCATCTCAACTTTAGCTGGTA
GCTCAAATATCACCACACAGCAAGGTGATATTAATGTTACTGTTGAATCA
TGTAAACATATTTTCATGGAAAGTGATCAAGGTAATATTAGTATTGGTCT
TGGTGACTCTCTAGCAGCATTTCTGGATGCGGTTGGTGCTTATATTGATG
TGCCACAAGATTTGCTTGTTGATGGCATGAAGCGAGAAGAATCCACTGGA
ATACAATATTTTGAAGGAAAACTAGGAGATTCTGCAGAAAATTGCATCAA
TGCGAAAACTTTGCATGGCACTGTTGATTTTTCAcgtaaaaactggtttt
ctaaatttaatttgGATTTGGATTAAACTGATTCTAGATGTAGTGTTATA
ATGTTTATGAtgaaagctttgttttgttATTCACAATGTTCTGATCAATT
TATTCGAATTTCTGGTTTCAATCAATCTCTCTTCTTTTtacttcactttt
tttgtctGCGTTTTTATTATACTATTTTTGCCATTTGTTTCCTATTTTCT
TACATCATTCTTAAGGCCCTCAGCATGTTATTTGCTTATTTAAGTATGTC
AAAATAGTCACCGTTGATGAAAAACGTCAATGTcatgaaaataaggaaaa
agttgagacttttaCATTCCCCTTCATAAACGAAATGAACATAAACTCAC
AAATTATTGTTATTATATTTAAATAAATCTTTTGATTATCTATTCTAGAT
AAACATAAATATAATGGCTTCTCAGCCCTCAACTAAGATATCGATGTCAG
AAATGAATACTGGTCAACGAATATTGAGGTATTTGATCATCAAGAAAGAG
AATCTAAAAAGAATACTGTTCTTTGGTTTGGATGTCTTGAAGAATACAAG
TGTAGCTTCACCAAATATTGCTTGTAAACATTTTAACCTCTCCAAATATG
GTCATTGCTGTAAACTGGTCTTTCCAGAACGTCTAAATGGTACAGCAGTA
AACGTATCAGAATCTTACTTTTATGATATGAAAGGGTTATTTTATGTTGT
ATTCAATTATTATAATTTCAAAGAGCAAATTGCGATTGTCAAAAGCTGTT
TTGAGGAATGGTCAGCTATGGATATCACAGACAAGTTaccacaatttttg
aaaattgatatgGAGGATATATTGAATGAGAAGTTTGAACCTGAAATTAT
TGGTGAAAATCGAACTATTTGCTGTTGTAAATGTATTGACAAACAACATA
GTGATTTTCTTCTACAGGATGGTCAACCTGCATTAAATGCCAAGGAGGCG
ATCATTTCTGATAAGTCCCATATATCCAAACATGTATTAATACCAACATT
GGAAGACCTCAACAAAAGTATATTTGAAATACCAGGAAAATCTTGCAGTG
ATTCATTTAGCCATAAACAAGGCAACATTCAACCGGTAGAATATACATCA
GATTTAAATTTAAAGAAGAATAACCAAGAAATGTGGAAGAAACTTGATGA
AGTGATGCTCACTAGAAGTACACAGACATCTATTGAAACAAAGGATGCTC
ACATTCAAACTGAATCTGATATTAAGATCTCGAAACCATTGGCTATGAGC
ATGGCTACACAAACagaaaacaagaaaagaaaattacagACAATACCTAC
CTTGGATTCCAACAACCACCATCAGAGTTCACTCAATCTTCTAGAATCCA
TGTCTAACATATTGCAAGAATANGTGGATTCCAACAGTCACCATCAGAGT
TCACTCAATCTTCTAGAATCCATGTCTAACATATTGCAAGAATACGTCAG
TAAATATCTAGAcgatattttcttcttcaaagtGTACAGTCTAGTTGATT
CCTTTCTCTATCTACTCAAGGATGAACTTAGCCTGGTTATTTCCACAACC
ACAGGGATTTTCCCTTTTCACCTAATGCTGGAGTATGCTAATATCAAGAA
ATCAAACATCCCAAAGAACCTTCATAGTAACTTGAACCTCTATTACCAGG
ATGGCTTATTGAATTTGTTCAGCAAATGGCTTGGTATGCAGTTCTGTAAT
TTCAGATCCACCATTTCCAACCAGATTGGTGAATACAAAAAATTGTTAAT
TCAGAGTAACCAATTTTTACCACCtgctttaaaagttttgaacgaagaaa
aattatttccaattTGTATGGTCATGTTTTTGAACCATTGGTTGAATAAG
AGACTTGAGGATGAGGAATTTCAATATTCGAAAATTTTGTTGGTTTTGGA
ATTGATGAATGATGAATTGTTAACAGGTGTTGGTCACGTGGTTTATGCTA
AGTTAAAAAGTATTCGATCGATGTGATCATTTATTTTGCATCAcgtggtc
taatgtcgacatccctcttctaactCCGACACgctgttttagagatagga
ataatagtaaggtcagaatcactgatagataaaagattttttcctctctg
gTCGCTAAGCAAAGACCTTTCTAAGAAGGATGTTGggattagaagaggga
tgtcgacattagaccaagttacggtacttTGTACAGACAAGTTATTAAAA
TATTCTAgtatttgttcaaaattttatgaagttttatttttaggggggta
aatttccaaatagTTTTATATCCTCTTTCCCCCATAGgcaattttttctg
gaaaagcccaatgctGATTTGTATAGTTTAATGTATGCccaaaatcattt
tataattGATTATTGCTTTTTTTCTAAATCGGTGTTACCATAAACAATTC
ATAGTGTAATGGCAGCTTATGGGACCAAACAGATTTTTTCAAACTATCTA
GTTG Coding sequence (CDS) from alignment at sc0000134:338730..342433 >TCONS_00012014 ID=TCONS_00012014|Name=TCONS_00012014|organism=Clytia hemisphaerica|type=CDS|length=1563bp|location=Sequence derived from alignment at sc0000134:338730..342433 (Clytia hemisphaerica)
ATGGCTTCTCAGCCCTCAACTAAGATATCGATGTCAGAAATGAATACTGG
TCAACGAATATTGAGGTATTTGATCATCAAGAAAGAGAATCTAAAAAGAA
TACTGTTCTTTGGTTTGGATGTCTTGAAGAATACAAGTGTAGCTTCACCA
AATATTGCTTGTAAACATTTTAACCTCTCCAAATATGGTCATTGCTGTAA
ACTGGTCTTTCCAGAACGTCTAAATGGTACAGCAGTAAACGTATCAGAAT
CTTACTTTTATGATATGAAAGGGTTATTTTATGTTGTATTCAATTATTAT
AATTTCAAAGAGCAAATTGCGATTGTCAAAAGCTGTTTTGAGGAATGGTC
AGCTATGGATATCACAGACAAGTTaccacaatttttgaaaattgatatgG
AGGATATATTGAATGAGAAGTTTGAACCTGAAATTATTGGTGAAAATCGA
ACTATTTGCTGTTGTAAATGTATTGACAAACAACATAGTGATTTTCTTCT
ACAGGATGGTCAACCTGCATTAAATGCCAAGGAGGCGATCATTTCTGATA
AGTCCCATATATCCAAACATGTATTAATACCAACATTGGAAGACCTCAAC
AAAAGTATATTTGAAATACCAGGAAAATCTTGCAGTGATTCATTTAGCCA
TAAACAAGGCAACATTCAACCGGTAGAATATACATCAGATTTAAATTTAA
AGAAGAATAACCAAGAAATGTGGAAGAAACTTGATGAAGTGATGCTCACT
AGAAGTACACAGACATCTATTGAAACAAAGGATGCTCACATTCAAACTGA
ATCTGATATTAAGATCTCGAAACCATTGGCTATGAGCATGGCTACACAAA
CagaaaacaagaaaagaaaattacagACAATACCTACCTTGGATTCCAAC
AACCACCATCAGAGTTCACTCAATCTTCTAGAATCCATGTCTAACATATT
GCAAGAATANGTGGATTCCAACAGTCACCATCAGAGTTCACTCAATCTTC
TAGAATCCATGTCTAACATATTGCAAGAATACGTCAGTAAATATCTAGAc
gatattttcttcttcaaagtGTACAGTCTAGTTGATTCCTTTCTCTATCT
ACTCAAGGATGAACTTAGCCTGGTTATTTCCACAACCACAGGGATTTTCC
CTTTTCACCTAATGCTGGAGTATGCTAATATCAAGAAATCAAACATCCCA
AAGAACCTTCATAGTAACTTGAACCTCTATTACCAGGATGGCTTATTGAA
TTTGTTCAGCAAATGGCTTGGTATGCAGTTCTGTAATTTCAGATCCACCA
TTTCCAACCAGATTGGTGAATACAAAAAATTGTTAATTCAGAGTAACCAA
TTTTTACCACCtgctttaaaagttttgaacgaagaaaaattatttccaat
tTGTATGGTCATGTTTTTGAACCATTGGTTGAATAAGAGACTTGAGGATG
AGGAATTTCAATATTCGAAAATTTTGTTGGTTTTGGAATTGATGAATGAT
GAATTGTTAACAGGTGTTGGTCACGTGGTTTATGCTAAGTTAAAAAGTAT
TCGATCGATGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012014-exon-sc0000134-1491911889:338730..342433 | TCONS_00012014-exon-sc0000134-1491911889:338730..342433 | Clytia hemisphaerica | exon |
| TCONS_00012014-exon-sc0000134-1510915933:338730..342433 | TCONS_00012014-exon-sc0000134-1510915933:338730..342433 | Clytia hemisphaerica | exon |
| TCONS_00012014-exon-sc0000134-1575043694:338730..342433 | TCONS_00012014-exon-sc0000134-1575043694:338730..342433 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000134 | supercontig | sc0000134:338730..342433 . |
Blast
BLAST of TCONS_00012014 vs. Swiss-Prot (Human)
Match: F185A (Protein FAM185A OS=Homo sapiens GN=FAM185A PE=2 SV=3) HSP 1 Score: 88.1965 bits (217), Expect = 3.027e-18 Identity = 80/333 (24.02%), Postives = 149/333 (44.74%), Query Frame = -2
Query: 2441 NMNHFGSLKYACPKIPVVVQCINPHDVPNGDMAFIKMVDNKDGHEILDLELGKYAKAEYCNQQNLLSVSQNLDVISDD--RDFSIHIEIPHNYDIEIESEQ---VSVKETEGKMLKIKST-GNCTLGKIKSGTVDIDV-AGDLECKSLLGNGLFILGGE---AKFGKIQAKNLSIDNQNGSIDIKSCYCPQMKCTSFAGSIIIGDMHGSSDLNTQSGNISISTLAGSSNITTQQGDINVTVESCKHIFMESDQGNISIGLGDSLAAFLDAVGAYIDVPQDLLVDGMKREESTGIQYFEGKLGDSA--ENCINAKTLHGTVDFSRKNWFSKFNL 3403
++ FG L+ P + V+ ++P P+GD + + + G LD KY ++L + + ++SD S+ + P + ++I+S V V+ EG KI++ G L +K + + G + C + + I + K+Q ++++ ++G + K Y +S AG I +G +HG+ L ++ GNI++ + +G +T QG I+V V + ++S +G+I + + SL A L G +DV ++ V M + G + ++ E I A GTV F R++WF L
Sbjct: 70 QVSPFGRLRARLP-CHLAVRPLDPLTYPDGDRVLVAVCGVEGGVRGLDGLQVKY-------DEDL----EEMAIVSDTIHPQASVEVNAPLKFGLDIKSSGSGCVKVQSIEGDNCKIETEHGTSILQSVKGQKLHVQTKGGKVICLGTVYGNIDIHASDKSAVTIDKLQGSSVTVSTEDGLLKAKYLYTESSFLSSAAGDITLGSVHGNITLQSKMGNITVDSSSGCLKASTNQGAIDVYVSQLGKVELKSHKGSIIVKVPSSLQAHLQLSGKEVDVNSEVHVQEMAEVRKDDVVTVTGLMNQASKREKWIKADAPKGTVSFRRQSWFQSLKL 390
The following BLAST results are available for this feature:
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