TCONS_00012007 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012007
Unique NameTCONS_00012007
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length508

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012007 ID=TCONS_00012007|Name=TCONS_00012007|organism=Clytia hemisphaerica|type=transcript|length=508bp
CTCAAATCCTTTTTAAACATTCAGTAACTTTTTCTTCCCCTTAGCATACT
ATAATCTTATCTTAGGCAAGGGAATTGAAAAATACCTATCGTGTTTAAAG
TGCATGCatctaaaaatatttccttttaaaaattatcATTAAAGAGCAAA
AAACGTTAATAAAATGTTCTACCTAAAcgttaaaacattttcaaataaat
attACCATTATATACTAgctaagaaaaaacaaaacaccATTATGTTCCAT
TAGATGTATCAAAAGTCCCGAATAGAACTTATAAAAAGGAAGGTGTTACT
TTTCTGACCTGTAGAATTCTAATACATCAAGACATTAATACATTTCCCTA
AAAGTGATATAAAAATTACCGATAAAATTTTCCGAATTTCTTACTGTATC
AAATTGCTGAGAATTAATTTGAATTTGTAACTTATTaccattgggctctt
ccagaaaatatttTCGTACATAAGggtggaaaatattttaaataaattgt
tcgggggg
Run BLAST on NCBI

transcript from alignment at sc0000134:130114..130621

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012007 ID=TCONS_00012007|Name=TCONS_00012007|organism=Clytia hemisphaerica|type=transcript|length=508bp|location=Sequence derived from alignment at sc0000134:130114..130621 (Clytia hemisphaerica)
ccccccgaacaatttatttaaaatattttccaccCTTATGTACGAaaata
ttttctggaagagcccaatggtAATAAGTTACAAATTCAAATTAATTCTC
AGCAATTTGATACAGTAAGAAATTCGGAAAATTTTATCGGTAATTTTTAT
ATCACTTTTAGGGAAATGTATTAATGTCTTGATGTATTAGAATTCTACAG
GTCAGAAAAGTAACACCTTCCTTTTTATAAGTTCTATTCGGGACTTTTGA
TACATCTAATGGAACATAATggtgttttgttttttcttagcTAGTATATA
ATGGTaatatttatttgaaaatgttttaacgTTTAGGTAGAACATTTTAT
TAACGTTTTTTGCTCTTTAATgataatttttaaaaggaaatatttttaga
tGCATGCACTTTAAACACGATAGGTATTTTTCAATTCCCTTGCCTAAGAT
AAGATTATAGTATGCTAAGGGGAAGAAAAAGTTACTGAATGTTTAAAAAG
GATTTGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006741XLOC_006741Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012007-exon-sc0000134-1491911889:130114..130621TCONS_00012007-exon-sc0000134-1491911889:130114..130621Clytia hemisphaericaexon
TCONS_00012007-exon-sc0000134-1510915933:130114..130621TCONS_00012007-exon-sc0000134-1510915933:130114..130621Clytia hemisphaericaexon
TCONS_00012007-exon-sc0000134-1575043694:130114..130621TCONS_00012007-exon-sc0000134-1575043694:130114..130621Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000134supercontigsc0000134:130114..130621 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.160012	0	0.305099	0.142815	2.09975	1.98162	0.360639	0.790233	0.394567	0.737572	0.943264	0.506134	0.712589	0.273893	0	0.263977	0.688332	0.503617	1.22442	0	0.127394	0	0.488097	0.347274	1.18528	0.402536
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00012007 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top