TCONS_00012003 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012003
Unique NameTCONS_00012003
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length381

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012003 ID=TCONS_00012003|Name=TCONS_00012003|organism=Clytia hemisphaerica|type=transcript|length=381bp
GTTCAGAGACGTAGTCAGATAACGACAGTAGCATCTTAGGATGTATTCCA
TCAGGACcaaatgatttattttgatttagatGTTTTATTTCGATCTGGAT
CAATTCTTTTGTTATATGGATTTCATCGATTACGGACTCAGTTCTTTTCT
CGAAGTCCGGTAGCTCCCCAGGAGGCTCTCTTGTGAAAACACTGCAGAAT
TGACGTTGAAGTATATTCGCCTTTTCATGGTCTTCgtgtttcaaagaatt
tttgtcatttggtGCCTTAAGTAATGATGATACCGTACTGGAAGATTTCA
TTTTGCTCCTGACATGTGAccagaaaacttttggttttgtttttgaattg
ttgcAGATTTTCCTTTCGTAATTTCTATGGG
Run BLAST on NCBI

protein sequence of TCONS_00012003-protein

>TCONS_00012003-protein ID=TCONS_00012003-protein|Name=TCONS_00012003-protein|organism=Clytia hemisphaerica|type=polypeptide|length=126bp
HRNYERKICNNSKTKPKVFWSHVRSKMKSSSTVSSLLKAPNDKNSLKHED
HEKANILQRQFCSVFTREPPGELPDFEKRTESVIDEIHITKELIQIEIKH
LNQNKSFGPDGIHPKMLLSLSDYVSE
Run BLAST on NCBI

transcript from alignment at sc0000134:11978..12358

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012003 ID=TCONS_00012003|Name=TCONS_00012003|organism=Clytia hemisphaerica|type=transcript|length=381bp|location=Sequence derived from alignment at sc0000134:11978..12358 (Clytia hemisphaerica)
CCCATAGAAATTACGAAAGGAAAATCTgcaacaattcaaaaacaaaacca
aaagttttctggTCACATGTCAGGAGCAAAATGAAATCTTCCAGTACGGT
ATCATCATTACTTAAGGCaccaaatgacaaaaattctttgaaacacGAAG
ACCATGAAAAGGCGAATATACTTCAACGTCAATTCTGCAGTGTTTTCACA
AGAGAGCCTCCTGGGGAGCTACCGGACTTCGAGAAAAGAACTGAGTCCGT
AATCGATGAAATCCATATAACAAAAGAATTGATCCAGATCGAAATAAAAC
atctaaatcaaaataaatcatttgGTCCTGATGGAATACATCCTAAGATG
CTACTGTCGTTATCTGACTACGTCTCTGAAC

Coding sequence (CDS) from alignment at sc0000134:11978..12358

>TCONS_00012003 ID=TCONS_00012003|Name=TCONS_00012003|organism=Clytia hemisphaerica|type=CDS|length=378bp|location=Sequence derived from alignment at sc0000134:11978..12358 (Clytia hemisphaerica)
CATAGAAATTACGAAAGGAAAATCTgcaacaattcaaaaacaaaaccaaa
agttttctggTCACATGTCAGGAGCAAAATGAAATCTTCCAGTACGGTAT
CATCATTACTTAAGGCaccaaatgacaaaaattctttgaaacacGAAGAC
CATGAAAAGGCGAATATACTTCAACGTCAATTCTGCAGTGTTTTCACAAG
AGAGCCTCCTGGGGAGCTACCGGACTTCGAGAAAAGAACTGAGTCCGTAA
TCGATGAAATCCATATAACAAAAGAATTGATCCAGATCGAAATAAAACat
ctaaatcaaaataaatcatttgGTCCTGATGGAATACATCCTAAGATGCT
ACTGTCGTTATCTGACTACGTCTCTGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006737XLOC_006737Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012003-proteinTCONS_00012003-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012003-exon-sc0000134-1491911889:11978..12358TCONS_00012003-exon-sc0000134-1491911889:11978..12358Clytia hemisphaericaexon
TCONS_00012003-exon-sc0000134-1510915933:11978..12358TCONS_00012003-exon-sc0000134-1510915933:11978..12358Clytia hemisphaericaexon
TCONS_00012003-exon-sc0000134-1575043694:11978..12358TCONS_00012003-exon-sc0000134-1575043694:11978..12358Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000134supercontigsc0000134:11978..12358 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.7596	3.83847	9.91225	9.62447	1.95808	2.9414	1.47507	2.3225	1.9996	2.26846	0.73886	2.02919	0.418553	3.39573	2.20175	2.38676	2.01215	1.64454	0.657796	1.14024	0.764796	2.44175	0.761124	1.90411	1.00254	0.988233	3.19116	2.25056	0.889803	1.62239
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00012003 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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