TCONS_00012002 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012002
Unique NameTCONS_00012002
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length382

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012002 ID=TCONS_00012002|Name=TCONS_00012002|organism=Clytia hemisphaerica|type=transcript|length=382bp
CAACAATGTGTGGTTGTTGTTTCTCTACGTTTTGTataaattctttcttt
ttgccTGATGTTAGAATATCAGCGTTGCAGTAATAAAACTTGATACCATT
TATTGTTAGATCATGGCGAGGGACTTGATTCAgacttttttgatttattg
ttcttttgtttttttgtgtttgagtGAGATTTTTGAACACAACTTTCTTG
GTTGCATTCTCTATTTGGGGTTTCGTCTTGATCTTGATGAGGAAGAATCC
GTTTTTTGAATTTCCCCGCActctccatttttcattttcagagttATTAT
TTGCGTTATGTTCTTTAGCTTGgttcgaaagtttttttaattggtTTCTT
TCATCGGGTGTTAGATCTTCAGTGATACTGAC
Run BLAST on NCBI

protein sequence of TCONS_00012002-protein

>TCONS_00012002-protein ID=TCONS_00012002-protein|Name=TCONS_00012002-protein|organism=Clytia hemisphaerica|type=polypeptide|length=127bp
VSITEDLTPDERNQLKKLSNQAKEHNANNNSENEKWRVRGNSKNGFFLIK
IKTKPQIENATKKVVFKNLTQTQKNKRTINQKSLNQVPRHDLTINGIKFY
YCNADILTSGKKKEFIQNVEKQQPHIV
Run BLAST on NCBI

transcript from alignment at sc0000134:10483..10864

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012002 ID=TCONS_00012002|Name=TCONS_00012002|organism=Clytia hemisphaerica|type=transcript|length=382bp|location=Sequence derived from alignment at sc0000134:10483..10864 (Clytia hemisphaerica)
GTCAGTATCACTGAAGATCTAACACCCGATGAAAGAAaccaattaaaaaa
actttcgaacCAAGCTAAAGAACATAACGCAAATAATaactctgaaaatg
aaaaatggagagTGCGGGGAAATTCAAAAAACGGATTCTTCCTCATCAAG
ATCAAGACGAAACCCCAAATAGAGAATGCAACCAAGAAAGTTGTGTTCAA
AAATCTCactcaaacacaaaaaaacaaaagaacaataaatcaaaaaagtc
TGAATCAAGTCCCTCGCCATGATCTAACAATAAATGGTATCAAGTTTTAT
TACTGCAACGCTGATATTCTAACATCAggcaaaaagaaagaatttatACA
AAACGTAGAGAAACAACAACCACACATTGTTG

Coding sequence (CDS) from alignment at sc0000134:10483..10864

>TCONS_00012002 ID=TCONS_00012002|Name=TCONS_00012002|organism=Clytia hemisphaerica|type=CDS|length=381bp|location=Sequence derived from alignment at sc0000134:10483..10864 (Clytia hemisphaerica)
GTCAGTATCACTGAAGATCTAACACCCGATGAAAGAAaccaattaaaaaa
actttcgaacCAAGCTAAAGAACATAACGCAAATAATaactctgaaaatg
aaaaatggagagTGCGGGGAAATTCAAAAAACGGATTCTTCCTCATCAAG
ATCAAGACGAAACCCCAAATAGAGAATGCAACCAAGAAAGTTGTGTTCAA
AAATCTCactcaaacacaaaaaaacaaaagaacaataaatcaaaaaagtc
TGAATCAAGTCCCTCGCCATGATCTAACAATAAATGGTATCAAGTTTTAT
TACTGCAACGCTGATATTCTAACATCAggcaaaaagaaagaatttatACA
AAACGTAGAGAAACAACAACCACACATTGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006736XLOC_006736Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012002-exon-sc0000134-1491911889:10483..10864TCONS_00012002-exon-sc0000134-1491911889:10483..10864Clytia hemisphaericaexon
TCONS_00012002-exon-sc0000134-1510915933:10483..10864TCONS_00012002-exon-sc0000134-1510915933:10483..10864Clytia hemisphaericaexon
TCONS_00012002-exon-sc0000134-1575043694:10483..10864TCONS_00012002-exon-sc0000134-1575043694:10483..10864Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012002-proteinTCONS_00012002-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000134supercontigsc0000134:10483..10864 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.37244	2.97295	4.47454	4.73907	1.10621	0.437072	0	0.49366	0.172812	0.42811	0	0.68289	0.545552	0.708202	0.46579	0.722808	1.07764	0.473375	0.435996	0.329862	0.69968	2.14417	1.25842	0.427541	0.220179	0.786016	0.281197	1.8006	0.910463	0.463809
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00012002 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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