TCONS_00012001 (transcript) - C. hemisphaerica

Overview
NameTCONS_00012001
Unique NameTCONS_00012001
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length569

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00012001 ID=TCONS_00012001|Name=TCONS_00012001|organism=Clytia hemisphaerica|type=transcript|length=569bp
GTAggtacaaagaataaaaatatataataaaatatcTCCCGACGAAAGGA
ATTGAGGCATTATCAGCTTTGTCGATAACTATCGAAAAGAAGcagtagaa
aaaagttgtataaCTATCAACGATTTATGATAATGTTCCACTCCTTAGtg
ttttttgcaatttctaTTGCGTCGTCCCATTCAATATTTAATGTTTTAAG
ACAACACTAAGCCAAGTTGTAGTTGGTTTCCCTAGCGGTCTTTGGTACTT
AGTGTTGGCATATTCGAGTGCTTTTTTCATAGGTGTTGAACTATTTGCTC
GTAATACAGTTCCCAGCCACTTCAGTCTACTACTTTTGATACGTTTGCTC
CACTTTACTGCGTTGGTCTTTTGATACACTTCGACATTCTTCACGATTTC
TGGCCAGCTCACATGTAGCACGAAAGTTCGCAACAATCTTCTTTGGAATG
CATCAATGGAATTTTCTGCTTGGCAGGTTGTTAAACTCCACAGCTCGCAG
TTATACAGGAATATCGGTTCGATGTAGGTCGTGAATGCTGACATTTTTGT
TTGTGTAGTCAACTTTTTA
Run BLAST on NCBI

protein sequence of TCONS_00012001-protein

>TCONS_00012001-protein ID=TCONS_00012001-protein|Name=TCONS_00012001-protein|organism=Clytia hemisphaerica|type=polypeptide|length=126bp
KKLTTQTKMSAFTTYIEPIFLYNCELWSLTTCQAENSIDAFQRRLLRTFV
LHVSWPEIVKNVEVYQKTNAVKWSKRIKSSRLKWLGTVLRANSSTPMKKA
LEYANTKYQRPLGKPTTTWLSVVLKH
Run BLAST on NCBI

transcript from alignment at sc0000134:7074..7642

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00012001 ID=TCONS_00012001|Name=TCONS_00012001|organism=Clytia hemisphaerica|type=transcript|length=569bp|location=Sequence derived from alignment at sc0000134:7074..7642 (Clytia hemisphaerica)
TAAAAAGTTGACTACACAAACAAAAATGTCAGCATTCACGACCTACATCG
AACCGATATTCCTGTATAACTGCGAGCTGTGGAGTTTAACAACCTGCCAA
GCAGAAAATTCCATTGATGCATTCCAAAGAAGATTGTTGCGAACTTTCGT
GCTACATGTGAGCTGGCCAGAAATCGTGAAGAATGTCGAAGTGTATCAAA
AGACCAACGCAGTAAAGTGGAGCAAACGTATCAAAAGTAGTAGACTGAAG
TGGCTGGGAACTGTATTACGAGCAAATAGTTCAACACCTATGAAAAAAGC
ACTCGAATATGCCAACACTAAGTACCAAAGACCGCTAGGGAAACCAACTA
CAACTTGGCTTAGTGTTGTCTTAAAACATTAAATATTGAATGGGACGACG
CAAtagaaattgcaaaaaacaCTAAGGAGTGGAACATTATCATAAATCGT
TGATAGttatacaacttttttctactgCTTCTTTTCGATAGTTATCGACA
AAGCTGATAATGCCTCAATTCCTTTCGTCGGGAgatattttattatatat
ttttattctttgtaccTAC

Coding sequence (CDS) from alignment at sc0000134:7074..7642

>TCONS_00012001 ID=TCONS_00012001|Name=TCONS_00012001|organism=Clytia hemisphaerica|type=CDS|length=381bp|location=Sequence derived from alignment at sc0000134:7074..7642 (Clytia hemisphaerica)
AAAAAGTTGACTACACAAACAAAAATGTCAGCATTCACGACCTACATCGA
ACCGATATTCCTGTATAACTGCGAGCTGTGGAGTTTAACAACCTGCCAAG
CAGAAAATTCCATTGATGCATTCCAAAGAAGATTGTTGCGAACTTTCGTG
CTACATGTGAGCTGGCCAGAAATCGTGAAGAATGTCGAAGTGTATCAAAA
GACCAACGCAGTAAAGTGGAGCAAACGTATCAAAAGTAGTAGACTGAAGT
GGCTGGGAACTGTATTACGAGCAAATAGTTCAACACCTATGAAAAAAGCA
CTCGAATATGCCAACACTAAGTACCAAAGACCGCTAGGGAAACCAACTAC
AACTTGGCTTAGTGTTGTCTTAAAACATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006735XLOC_006735Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012001-proteinTCONS_00012001-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00012001-exon-sc0000134-1491911889:7074..7642TCONS_00012001-exon-sc0000134-1491911889:7074..7642Clytia hemisphaericaexon
TCONS_00012001-exon-sc0000134-1510915933:7074..7642TCONS_00012001-exon-sc0000134-1510915933:7074..7642Clytia hemisphaericaexon
TCONS_00012001-exon-sc0000134-1575043694:7074..7642TCONS_00012001-exon-sc0000134-1575043694:7074..7642Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000134supercontigsc0000134:7074..7642 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.507825	0.39341	0.845122	0.469872	1.56053	0.990066	0.43571	0.350164	1.89842	0.870178	0.410981	0.751472	1.61231	0.722884	0.296522	0.818362	0.190922	0.466175	0.419645	0.33468	0.956399	0.238201	0	0	0.247441	0.692924	0	0	0.988718	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00012001 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top