TCONS_00011987 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011987
Unique NameTCONS_00011987
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1366

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011987 ID=TCONS_00011987|Name=TCONS_00011987|organism=Clytia hemisphaerica|type=transcript|length=1366bp
CACAATAAAAAGAGTGAATTCATACCATAcaaaattcatacccttaccaT
TAAACATTAAATTTGATGCAAATTAATTGAGATTGCTCCTAATAATCAAC
TAGATAATATACAATTATCCCATTTTATTGGTCtcattaaaatcaattct
taATTATGGGGTGATGCCAAAGAGTAATTCTAAAACGAAAAAGATGCTAT
GATTTCTGAATACattcctgaaaattttttttaataggaTGGATAATATA
ATAAAACctgaaaatattcaaacaaaaaggaaatttcacAAGTTGTTAAG
AATTACCAAAAATTGATTCTGATTTAAAATCAAAGCCAGTATAAGGCATG
GGTACGGACCccaatttaatttgatttcaTTATATAAGATGGGGTTGGGT
TTCATTTCAATGTTATTACATCATAATTAGTTAATTTTTAAGGAGAAATC
AGATTAGTAATTTTTGAATGATTTGCAACTCAGTATAAAAGGGTTCAACA
TGAAGAACTGACATCACAGTTCACttgaccaccaatcaaacaacaaacaa
caaagcAGCAAAAGGAAAAAGATTCAATATTTATTAAAGATCTTGAATTA
ATTCAGCAAAATGGCTTTGGTTTTTGTTCTAATCTCAATTGCATTATGCT
TATGCAACACCTTCCAATCGACATATGGTTTGTACGAGAAATGGAACAAC
AAAAATGAACTCAATCCTTACTTTATGAACGTCACTGGTCAAACACCTCC
ACCCAAGCTTTGTTTTGATTCGATGTGCAATGGAAAAGCTGATGGAAATT
ATGAGGTTAGATATCCAAATGGGGAATATGACCCAAATTATTTCTTGCAA
TGCTCTGGAGGACAAGCTAACTGCCAACCCTGCTGGCCACAATCTTTAGA
GTTCAGTCAAACTTGCAATCAATGTTTGTACAGCCGTGATGACGAATGCT
ACACAACAGAGGCTTGGAAACCAGCTTCAACCTATGATTGCCCTGACATC
TGCGGACGTATGGGACCAGAAGGACGGATGAACATCCGTGACCCTCAACA
ACCACGTCAATATGTTGCTTGTTGGAATGGAATGACTGTTGGTTGCGTCA
AATGTCCAGGAAATCTTCTCTTCAACGAAACATTCAATGCTTGTTTGTAC
AATGGGAAATACTGGACACAATCAATCAATTAAGATAATCCTGATGAAAG
TCTAGTTTTGGTTAGATCCCTGCTGATAAGCAAATAAGTCTAAAAgtgct
aaaatatttattccacAGTCGATAAATTCTATTATAATATATTATTTCTA
TCAACCTTGACTTGACTTAactttataatttataatttttgattttgact
taaCTCTATAAAAGTG
Run BLAST on NCBI

protein sequence of TCONS_00011987-protein

>TCONS_00011987-protein ID=TCONS_00011987-protein|Name=TCONS_00011987-protein|organism=Clytia hemisphaerica|type=polypeptide|length=190bp
MALVFVLISIALCLCNTFQSTYGLYEKWNNKNELNPYFMNVTGQTPPPKL
CFDSMCNGKADGNYEVRYPNGEYDPNYFLQCSGGQANCQPCWPQSLEFSQ
TCNQCLYSRDDECYTTEAWKPASTYDCPDICGRMGPEGRMNIRDPQQPRQ
YVACWNGMTVGCVKCPGNLLFNETFNACLYNGKYWTQSIN
Run BLAST on NCBI

transcript from alignment at sc0000134:395071..397155-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011987 ID=TCONS_00011987|Name=TCONS_00011987|organism=Clytia hemisphaerica|type=transcript|length=2085bp|location=Sequence derived from alignment at sc0000134:395071..397155- (Clytia hemisphaerica)
CACAATAAAAAGAGTGAATTCATACCATACAAAATTCATACCCTTACCAT
TAAACATTAAATTTGATGCAAATTAATTGAGATTGCTCCTAATAATCAAC
TAGATAATATACAATTATCCCATTTTATTGGTCTCATTAAAATCAATTCT
TAATTATGGGGTGATGCCAAAGAGTAATTCTAAAACGAAAAAGATGCTAT
GATTTCTGAATACATTCCTGAAAATTTTTTTTAATAGGATGGATAATATA
ATAAAACCTGAAAATATTCAAACAAAAAGGAAATTTCACAAGTTGTTAAG
AATTACCAAAAATTGATTCTGATTTAAAATCAAAGCCAGTATAAGGCATG
GGTACGGACCCCAATTTAATTTGATTTCATTATATAAGATGGGGTTGGGT
TTCATTTCAATGTTATTACATCATAATTAGTTAATTTTTAAGGAGAAATC
AGATTAGTAATTTTTGAATGATTTGCAACTCAGTATAAAAGGGTTCAACA
TGAAGAACTGACATCACAGTTCACTTGACCACCAATCAAACAACAAACAA
CAAAGCAGCAAAAGGAAAAAGATTCAATATTTATTAAAGATCTTGAATTA
ATTCAGCAAAATGGCTTTGGTTTTTGTTCTAATCTCAATTGCATTATGCT
TATGCAGTAAGTATATATACTTTGAATTTTTTTATGAAAAATAGTTAATT
GGTCTGTAAATCTAATTTGATGACAATTTCTTTAGTCATTTCTGCTCATT
TCTAAAAATTGTTTTAACAGTTTTCAGGTTTCCCTTTTATTAACTTAATT
CTTTTTCAAAATGAGTGCATAGCCCTAAGGCTACAAAAAACAATGATATT
GGTCTCATTCCAAGTTCTATTTGACCTGTTTTTCCTTTCCAGAACAGACA
CCTTCACCAAATTCTTTGCTATGCCATCAATCGTTTTTTTTTAATTTCCA
TAACAGACACCTTCCAATCGACATATGGTTTGTACGAGAAATGGAACAAC
AAAAATGAACTCAATCCTTACTTTATGAACGTCACTGGTCAAACACCTCC
ACCCAAGCTTTGTGAGTTAACAACCCCTTTTTATTTGAAATCCTTCCATT
TTTTCTGTAGATTTTAACAAATAAAAGTTATATTTTGCAGGACAAATTTT
CCTGGTGGATACAAACACAAAGTTTTGATTTGAAACTTTTGGTTAAAATG
TTTGGTAAAAACCATTGGTTTGCTAACCTTATTTTAAGCACCCCTTGAAA
ATATGCATCCTTTCTGAACTATAGGTTTTGATTCGATGTGCAATGGAAAA
GCTGATGGAAATTATGAGGTTAGATATCCAAATGGGGAATATGACCCAAA
TTATTTCTTGCAATGCTCTGGAGGACAAGCTAACTGCCAACCCTGCTGGC
CACAATCTTTAGAGTTCAGTCAAACTTGCAATCAATGTTTGTACAGCCGT
GATGGTAAGACTAAAAGAATCATTTTATAGAAATATTACATTATTCAGAC
TTTTTCAATATGTTCAGTCACCTACCAAGAGACAAGACTCATTCAAGAGA
CTATGGCAATCAAATTAATGTTCTAAAAAGAACTTGCTGCTATACTCTAT
TCAGCTAATTTTTTTTACTTTTTAAACTTAATTTTTATTGAATTTCTATC
TCATCCATAGACGAATGCTACACAACAGAGGCTTGGAAACCAGCTTCAAC
CTATGATTGCCCTGACATCTGCGGACGTATGGGACCAGAAGGACGGATGA
ACATCCGTGACCCTCAACAACCACGTCAATATGTTGCTTGTTGGAATGGA
ATGACTGTTGGTTGCGTCAAATGTCCAGGAAATCTTCTCTTCAACGAAAC
ATTCAATGCTTGTTTGTACAATGGGAAATACTGGACACAATCAATCAATT
AAGATAATCCTGATGAAAGTCTAGTTTTGGTTAGATCCCTGCTGATAAGC
AAATAAGTCTAAAAGTGCTAAAATATTTATTCCACAGTCGATAAATTCTA
TTATAATATATTATTTCTATCAACCTTGACTTGACTTAACTTTATAATTT
ATAATTTTTGATTTTGACTTAACTCTATAAAAGTG

Coding sequence (CDS) from alignment at sc0000134:395071..397155-

>TCONS_00011987 ID=TCONS_00011987|Name=TCONS_00011987|organism=Clytia hemisphaerica|type=CDS|length=2292bp|location=Sequence derived from alignment at sc0000134:395071..397155- (Clytia hemisphaerica)
ACGAATGCTACACAACAGAGGCTTGGAAACCAGCTTCAACCTATGATTGC
CCTGACATCTGCGGACGTATGGGACCAGAAGGACGGATGAACATCCGTGA
CCCTCAACAACCACGTCAATATGTTGCTTGTTGGAATGGAATGACTGTTG
GTTGCGTCAAATGTCCAGGAAATCTTCTCTTCAACGAAACATTCAATGCT
TGTTTGTACAATGGGAAATACTGGACACAATCAATCAATTAAGTTTTGAT
TCGATGTGCAATGGAAAAGCTGATGGAAATTATGAGGTTAGATATCCAAA
TGGGGAATATGACCCAAATTATTTCTTGCAATGCTCTGGAGGACAAGCTA
ACTGCCAACCCTGCTGGCCACAATCTTTAGAGTTCAGTCAAACTTGCAAT
CAATGTTTGTACAGCCGTGATGACACCTTCCAATCGACATATGGTTTGTA
CGAGAAATGGAACAACAAAAATGAACTCAATCCTTACTTTATGAACGTCA
CTGGTCAAACACCTCCACCCAAGCTTTATGGCTTTGGTTTTTGTTCTAAT
CTCAATTGCATTATGCTTATGCAACGAATGCTACACAACAGAGGCTTGGA
AACCAGCTTCAACCTATGATTGCCCTGACATCTGCGGACGTATGGGACCA
GAAGGACGGATGAACATCCGTGACCCTCAACAACCACGTCAATATGTTGC
TTGTTGGAATGGAATGACTGTTGGTTGCGTCAAATGTCCAGGAAATCTTC
TCTTCAACGAAACATTCAATGCTTGTTTGTACAATGGGAAATACTGGACA
CAATCAATCAATTAAGTTTTGATTCGATGTGCAATGGAAAAGCTGATGGA
AATTATGAGGTTAGATATCCAAATGGGGAATATGACCCAAATTATTTCTT
GCAATGCTCTGGAGGACAAGCTAACTGCCAACCCTGCTGGCCACAATCTT
TAGAGTTCAGTCAAACTTGCAATCAATGTTTGTACAGCCGTGATGACACC
TTCCAATCGACATATGGTTTGTACGAGAAATGGAACAACAAAAATGAACT
CAATCCTTACTTTATGAACGTCACTGGTCAAACACCTCCACCCAAGCTTT
ATGGCTTTGGTTTTTGTTCTAATCTCAATTGCATTATGCTTATGCAACGA
ATGCTACACAACAGAGGCTTGGAAACCAGCTTCAACCTATGATTGCCCTG
ACATCTGCGGACGTATGGGACCAGAAGGACGGATGAACATCCGTGACCCT
CAACAACCACGTCAATATGTTGCTTGTTGGAATGGAATGACTGTTGGTTG
CGTCAAATGTCCAGGAAATCTTCTCTTCAACGAAACATTCAATGCTTGTT
TGTACAATGGGAAATACTGGACACAATCAATCAATTAAGTTTTGATTCGA
TGTGCAATGGAAAAGCTGATGGAAATTATGAGGTTAGATATCCAAATGGG
GAATATGACCCAAATTATTTCTTGCAATGCTCTGGAGGACAAGCTAACTG
CCAACCCTGCTGGCCACAATCTTTAGAGTTCAGTCAAACTTGCAATCAAT
GTTTGTACAGCCGTGATGACACCTTCCAATCGACATATGGTTTGTACGAG
AAATGGAACAACAAAAATGAACTCAATCCTTACTTTATGAACGTCACTGG
TCAAACACCTCCACCCAAGCTTTATGGCTTTGGTTTTTGTTCTAATCTCA
ATTGCATTATGCTTATGCAACGAATGCTACACAACAGAGGCTTGGAAACC
AGCTTCAACCTATGATTGCCCTGACATCTGCGGACGTATGGGACCAGAAG
GACGGATGAACATCCGTGACCCTCAACAACCACGTCAATATGTTGCTTGT
TGGAATGGAATGACTGTTGGTTGCGTCAAATGTCCAGGAAATCTTCTCTT
CAACGAAACATTCAATGCTTGTTTGTACAATGGGAAATACTGGACACAAT
CAATCAATTAAGTTTTGATTCGATGTGCAATGGAAAAGCTGATGGAAATT
ATGAGGTTAGATATCCAAATGGGGAATATGACCCAAATTATTTCTTGCAA
TGCTCTGGAGGACAAGCTAACTGCCAACCCTGCTGGCCACAATCTTTAGA
GTTCAGTCAAACTTGCAATCAATGTTTGTACAGCCGTGATGACACCTTCC
AATCGACATATGGTTTGTACGAGAAATGGAACAACAAAAATGAACTCAAT
CCTTACTTTATGAACGTCACTGGTCAAACACCTCCACCCAAGCTTTATGG
CTTTGGTTTTTGTTCTAATCTCAATTGCATTATGCTTATGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006726XLOC_006726Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011987-exon-sc0000134-1575043694:396500..397155TCONS_00011987-exon-sc0000134-1575043694:396500..397155Clytia hemisphaericaexon
TCONS_00011987-exon-sc0000134-1575043694:396095..396199TCONS_00011987-exon-sc0000134-1575043694:396095..396199Clytia hemisphaericaexon
TCONS_00011987-exon-sc0000134-1575043694:395702..395881TCONS_00011987-exon-sc0000134-1575043694:395702..395881Clytia hemisphaericaexon
TCONS_00011987-exon-sc0000134-1575043694:395071..395495TCONS_00011987-exon-sc0000134-1575043694:395071..395495Clytia hemisphaericaexon
TCONS_00011987-exon-sc0000134-1510915933:396500..397155TCONS_00011987-exon-sc0000134-1510915933:396500..397155Clytia hemisphaericaexon
TCONS_00011987-exon-sc0000134-1510915933:396095..396199TCONS_00011987-exon-sc0000134-1510915933:396095..396199Clytia hemisphaericaexon
TCONS_00011987-exon-sc0000134-1510915933:395702..395881TCONS_00011987-exon-sc0000134-1510915933:395702..395881Clytia hemisphaericaexon
TCONS_00011987-exon-sc0000134-1510915933:395071..395495TCONS_00011987-exon-sc0000134-1510915933:395071..395495Clytia hemisphaericaexon
TCONS_00011987-exon-sc0000134-1491911889:396500..397155TCONS_00011987-exon-sc0000134-1491911889:396500..397155Clytia hemisphaericaexon
TCONS_00011987-exon-sc0000134-1491911889:396095..396199TCONS_00011987-exon-sc0000134-1491911889:396095..396199Clytia hemisphaericaexon
TCONS_00011987-exon-sc0000134-1491911889:395702..395881TCONS_00011987-exon-sc0000134-1491911889:395702..395881Clytia hemisphaericaexon
TCONS_00011987-exon-sc0000134-1491911889:395071..395495TCONS_00011987-exon-sc0000134-1491911889:395071..395495Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011987-proteinTCONS_00011987-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000134supercontigsc0000134:395071..397155 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.237573	0.0617032	0.086791	0	3.65051	1.86494	2.73722	0	1.67644	1.61433	1.62462	1.7487	11.7156	7.56767	0.0664022	0.0955889	0.315387	0.149346	0	0.43745	0.155887	0.29611	0.175791	0	0	0	3.29024	0.761098	0.105154	0.185693
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002557Chitin-bd_dom
Vocabulary: Cellular Component
TermDefinition
GO:0005576extracellular region
Vocabulary: Biological Process
TermDefinition
GO:0006030chitin metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0008061chitin binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006030 chitin metabolic process
cellular_component GO:0005576 extracellular region
molecular_function GO:0008061 chitin binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00011987 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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