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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011981 ID=TCONS_00011981|Name=TCONS_00011981|organism=Clytia hemisphaerica|type=transcript|length=1371bp
TCTTTTTCGTATACTGGAACCTAGTCTCTTCCACCCAATCATTTCCCTGA
TTTTCTTGTCATACAAACATACCAATGATCGCTGACCATGAAATAATGCT
ATGTCTTTTTTAGAgtagaagaaataaataaactttaAAGAAAACCCGAA
AGGTTTCAGGCAACATGATGAAAGAATCGATTTGCTTTTTGTTGATGTTT
CTCACAACAGttttcagttATAGAAGCGAGACCATCTGCATGCATTCTCG
AGAAAATGAGGAAATGGCAGTAGAATGTCAGCCTGGAGAATCTTGTTACG
CTATCGCTTCCGCATACTACCATAAAAACAACGGTACCTGGGGATTACGG
AAATACGCCCTTGGGTGTTGGGAAACAACGCCTGATTGTACggaaaatga
atgtttgatgcCAACGCCCGACTATATTTGGGTGGATCATCATTTCCCAA
GATTCTGTTGCTGTAAAGGAAATTTATGTAACAGGAATTTGAAACTGTTC
AAATAGATCCTTATTGGAAGTGATATTGACATTTGATGGTGAACTTTATG
TTATTTGGTGTATATTTCAACAATAGCTTCTCTAAGATTTTGATTATGAG
ATTATGGACCATTATCTATTCAAATAGTAAATAGCATAAACGTTTCAAAA
TAAACCTTGCAAGATATTCAGTGCCttacaaaatgtcaaaatattttgct
caaaaagGACTGCTTAATGAAATGATCAAACACAGATTCTCTAGTTTGAC
TGAGAAGACAGGAGGGTTTTCAACTTGGACTAAACTTCAAATCTATTATG
GATCAAGGTATACTTTGCTATATACTTGAAAATATTCCTAGAATAGAGGA
TTCTTGTTAGAATCAGAAGTTTTGTCTGTTGAGTTCTCAATTTTTCTGCC
TGAATACCAACATTTACCTATGTACatcccctttctcacagacctggtgg
gattttttgagccagaaaattcagtggggatggaaaatagcacaatattc
tGCAGTGAGGacttgcttatctgattattttcagacaaaaattcgagtat
aattttccactggggacaatattttggccaatttttccagtgggaagagt
TCCCAGtgtgtctgtgagaaggagttTCTATGTCTAGCGTGTTGTAGTTG
AGTAAAGCATGGATACTTCAGGTCTTGTTTGTAAATAGATTAAGTTTAGA
ATTGATTgtactaaaaaatgaaaatttctttataacttttaaattttcaa
aaaatagattttttgcagagtatattttttctaagaattaaTTAGTTTTG
TAAATATAATATGACAGGTACGTAAGATAGTCTTAAAAAGGtattttaaa
atataatggTGAATGTGAAAA Run BLAST on NCBI protein sequence of TCONS_00011981-protein >TCONS_00011981-protein ID=TCONS_00011981-protein|Name=TCONS_00011981-protein|organism=Clytia hemisphaerica|type=polypeptide|length=113bp
MMKESICFLLMFLTTVFSYRSETICMHSRENEEMAVECQPGESCYAIASA
YYHKNNGTWGLRKYALGCWETTPDCTENECLMPTPDYIWVDHHFPRFCCC
KGNLCNRNLKLFK Run BLAST on NCBI transcript from alignment at sc0000134:274599..276286- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00011981 ID=TCONS_00011981|Name=TCONS_00011981|organism=Clytia hemisphaerica|type=transcript|length=1688bp|location=Sequence derived from alignment at sc0000134:274599..276286- (Clytia hemisphaerica)
TCTTTTTCGTATACTGGAACCTAGTCTCTTCCACCCAATCATTTCCCTGA
TTTTCTTGTCATACAAACATACCAATGATCGCTGACCATGAAATAATGCT
ATGTCTTTTTTAGAGTAGAAGAAATAAATAAACTTTAAAGAAAACCCGAA
AGGTTTCAGGCAACATGATGAAAGAATCGATTTGCTTTTTGTTGATGTTT
CTCACAACAGGTAAATCTTGAATGATTTCATTTTTTAGTTTCCTAGAATT
TTAAAAACATCGCACAAAGACTATTGGTGAGGTTTTAGAGAAAAATTTCC
CCTATTTCATTTCCAATTGGAGTGGGAATGTTATCTCCCAATGGGATTTA
GATTTTATAAATGAATAACTTTTTGGTGCGAGATTTTTTTGGTTTTTTTT
ACCAAGTTCAGAATAGAATACCTTTTGTAATATGGCGGAAAATCAAAAAT
TCACGGGGGTTAAAAATTATGAGGTACAAAAAATATTGCGAAAAAATCCT
CGCTTCTACTTTTTCTTCTTTTTTCAGTTTTCAGTTATAGAAGCGAGACC
ATCTGCATGCATTCTCGAGAAAATGAGGAAATGGCAGTAGAATGTCAGCC
TGGAGAATCTTGTTACGCTATCGCTTCCGCATACTACCATAAAAACAACG
GTACCTGGGGATTACGGAAATACGCCCTTGGGTGTTGGGAAACAACGCCT
GATTGTACGGAAAATGAATGTTTGATGCCAACGCCCGACTATATTTGGGT
GGATCATCATTTCCCAAGATTCTGTTGCTGTAAAGGAAATTTATGTAACA
GGAATTTGAAACTGTTCAAATAGATCCTTATTGGAAGTGATATTGACATT
TGATGGTGAACTTTATGTTATTTGGTGTATATTTCAACAATAGCTTCTCT
AAGATTTTGATTATGAGATTATGGACCATTATCTATTCAAATAGTAAATA
GCATAAACGTTTCAAAATAAACCTTGCAAGATATTCAGTGCCTTACAAAA
TGTCAAAATATTTTGCTCAAAAAGGACTGCTTAATGAAATGATCAAACAC
AGATTCTCTAGTTTGACTGAGAAGACAGGAGGGTTTTCAACTTGGACTAA
ACTTCAAATCTATTATGGATCAAGGTATACTTTGCTATATACTTGAAAAT
ATTCCTAGAATAGAGGATTCTTGTTAGAATCAGAAGTTTTGTCTGTTGAG
TTCTCAATTTTTCTGCCTGAATACCAACATTTACCTATGTACATCCCCTT
TCTCACAGACCTGGTGGGATTTTTTGAGCCAGAAAATTCAGTGGGGATGG
AAAATAGCACAATATTCTGCAGTGAGGACTTGCTTATCTGATTATTTTCA
GACAAAAATTCGAGTATAATTTTCCACTGGGGACAATATTTTGGCCAATT
TTTCCAGTGGGAAGAGTTCCCAGTGTGTCTGTGAGAAGGAGTTTCTATGT
CTAGCGTGTTGTAGTTGAGTAAAGCATGGATACTTCAGGTCTTGTTTGTA
AATAGATTAAGTTTAGAATTGATTGTACTAAAAAATGAAAATTTCTTTAT
AACTTTTAAATTTTCAAAAAATAGATTTTTTGCAGAGTATATTTTTTCTA
AGAATTAATTAGTTTTGTAAATATAATATGACAGGTACGTAAGATAGTCT
TAAAAAGGTATTTTAAAATATAATGGTGAATGTGAAAA Coding sequence (CDS) from alignment at sc0000134:274599..276286- >TCONS_00011981 ID=TCONS_00011981|Name=TCONS_00011981|organism=Clytia hemisphaerica|type=CDS|length=684bp|location=Sequence derived from alignment at sc0000134:274599..276286- (Clytia hemisphaerica)
TTTTCAGTTATAGAAGCGAGACCATCTGCATGCATTCTCGAGAAAATGAG
GAAATGGCAGTAGAATGTCAGCCTGGAGAATCTTGTTACGCTATCGCTTC
CGCATACTACCATAAAAACAACGGTACCTGGGGATTACGGAAATACGCCC
TTGGGTGTTGGGAAACAACGCCTGATTGTACGGAAAATGAATGTTTGATG
CCAACGCCCGACTATATTTGGGTGGATCATCATTTCCCAAGATTCTGTTG
CTGTAAAGGAAATTTATGTAACAGGAATTTGAAACTGTTCAAATAGATGA
TGAAAGAATCGATTTGCTTTTTGTTGATGTTTCTCACAACAGTTTTCAGT
TATAGAAGCGAGACCATCTGCATGCATTCTCGAGAAAATGAGGAAATGGC
AGTAGAATGTCAGCCTGGAGAATCTTGTTACGCTATCGCTTCCGCATACT
ACCATAAAAACAACGGTACCTGGGGATTACGGAAATACGCCCTTGGGTGT
TGGGAAACAACGCCTGATTGTACGGAAAATGAATGTTTGATGCCAACGCC
CGACTATATTTGGGTGGATCATCATTTCCCAAGATTCTGTTGCTGTAAAG
GAAATTTATGTAACAGGAATTTGAAACTGTTCAAATAGATGATGAAAGAA
TCGATTTGCTTTTTGTTGATGTTTCTCACAACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00011981-exon-sc0000134-1575043694:276077..276286 | TCONS_00011981-exon-sc0000134-1575043694:276077..276286 | Clytia hemisphaerica | exon |
| TCONS_00011981-exon-sc0000134-1575043694:274599..275759 | TCONS_00011981-exon-sc0000134-1575043694:274599..275759 | Clytia hemisphaerica | exon |
| TCONS_00011981-exon-sc0000134-1510915933:276077..276286 | TCONS_00011981-exon-sc0000134-1510915933:276077..276286 | Clytia hemisphaerica | exon |
| TCONS_00011981-exon-sc0000134-1510915933:274599..275759 | TCONS_00011981-exon-sc0000134-1510915933:274599..275759 | Clytia hemisphaerica | exon |
| TCONS_00011981-exon-sc0000134-1491911889:276077..276286 | TCONS_00011981-exon-sc0000134-1491911889:276077..276286 | Clytia hemisphaerica | exon |
| TCONS_00011981-exon-sc0000134-1491911889:274599..275759 | TCONS_00011981-exon-sc0000134-1491911889:274599..275759 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000134 | supercontig | sc0000134:274599..276286 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000472 | Activin_recp |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004675 | transmembrane receptor protein serine/threonine kinase activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016020 | membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0016020 |
membrane |
| molecular_function |
GO:0004675 |
transmembrane receptor protein serine/threonine kinase activity |
Blast
The following BLAST results are available for this feature:
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