TCONS_00011974 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011974
Unique NameTCONS_00011974
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1091

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011974 ID=TCONS_00011974|Name=TCONS_00011974|organism=Clytia hemisphaerica|type=transcript|length=1091bp
CTTGAACGCACAAACATTCCAATCGAAAAGTGGGAGATGGCGGATGAAGA
AGCGGGAAAGCCATGTTGAATGCACAAGAAATTATAGAACAAGGTAACAA
ACCTACTAGTCTACCAGATACTGGTGGTCTTAAATTCTTTAAAGTTGACG
AGCACGACAAAGAACAAAAAGAGAGTATTGACTATACATTGGATAATTAT
GCGCAGTGTCTTAAAGAGGAGCGTGTGTGCAGAAAAATGAATCTATCAGT
TGCTTCTTGGGAAGATGAACTCTCCCTTGCTCTTGTTACCTCAATGAAAG
GAAGTACAGTACAAAAATTTGGTTTCCAatcaaaaaatggtaaatttctA
TACGCTGAAGAATGTTTGTTTTTGATGGAGCAAGGCATATTGGAACTTTT
TGTGGATGAAATCACTTTATCTTTACAAGAGGCTTTCTCTTTGTTGCTTC
CTTTACAACCCTCCTTTGAACATTATCAGATTTATACAAATCTTTGTCGT
CAAGGTTTCTTGGTCAATCGTTACAAACCCTCCTTAAATGAAGATGATAT
TTCTACTGTAAATGAACATAATGAATTTCCAGATACTGAAAAATCATCAG
CAGACTTGAATAAAATTGATATTGATGACACTTTAAAGAAAGGTTATATG
AAGGATTTATGGAAAGGTGACATTACTCCTTTAATGCAACCTTCTGAGTC
AACATCTACTGCAGCCGTTCTTTCAAAGCTGCAAACATCAAAAATGATAC
ATCTTAAAAAAGACAGTATGGAAGATAAACACCAAGACCTTCCTAaattc
aaaatcgattttgacgTATACACTTCAAAGGAATTACGTAAACAAAATAA
AGATACCAATGCTTCACCACATTTTCGTGTCACAGTTTGTAAATATGACC
AGGACCCACCAACGTTCAAAGATTTGTCTCGTTTAACCAAAGAAGCTGCG
GGTGTTCACTTAAAAATAGGTGTGGTAAATCAAGGCACTGTTACTTTTTA
TGGCATGTTTTCTACTGACCTTCCAACTGTTATTTCTGTACcgtgaaata
tatttttctttttttttacactttttcacATTGTTATTTCT
Run BLAST on NCBI

transcript from alignment at sc0000134:197271..204399-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011974 ID=TCONS_00011974|Name=TCONS_00011974|organism=Clytia hemisphaerica|type=transcript|length=7129bp|location=Sequence derived from alignment at sc0000134:197271..204399- (Clytia hemisphaerica)
CTTGAACGCACAAACATTCCAATCGAAAAGTGGGAGATGGCGGATGAAGA
AGCGGGAAAGGTGAGTAATCGACAGTTTTATTAAATTCAAACTTGCTTTT
AAATTTAAATTTGTCTTTCTGAATTTTCCGAAGCATCATTATTACATTTA
CATGTTCCGGTTAGTGGAGCCTATTCCCTCAAATATATTTTGCTACTACC
TTGCAGTGTCCATGTGTATGATTTATGAATTTCTAAATTTTTGATGACTG
TCACGACCCTTGACATGGATGGCCCAAGAATTCTCGGGCCATGTTCGGGA
GACCCTATCATTTCTTTTGGCCCGAACATGACCCAAGTCATTCAGGCCAT
GTTCGGGCCATGTTAAATGTTAAATTGATTCAGCATGTCCAGTCAAACAA
AATAGTACAAAATAAGATTTGTCTGTTTTGTTTATATCGCTCAAAAAGAC
TTTACGAGCTTCCTGTGGACACACTTCAGTTTAAAACCAGGACCAGTTTA
CTAGCAAATATTTCCACCCTAAGTATATTTATAACTATGTTTTCATACCA
AATAAGACATTTAATATTTATATGAATTTACAACATTCATATATTTAACC
CTTTCCGTCACAAGTGTTACGCGTAAGCCAAATCGCGTATTACGAACAAC
CTCTAAATTGCCGAGTACAGGAGAAAAAAAAATCGAAATTCAAAATGGCG
GCCAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTGCCGATGTCGTATATAT
CCGACATGCAAATTTTCACTCTACTTGCCAATGTCGTATATATCCGACAT
CAAATTTTTTTACCTATTTGCCGAGGCCTTTAAAAAAGAGGCAGCTCTAT
TGCCGAGAAATCAGCTTTTAGGAAAATGGTTTTCTTATTTTGCCAATGTC
GTATATATCCGACATAAAACAATCCAAATAGTAATAGTGACAGTATATAT
TAAGTGCTCAAAAGATTTATTTCAGGTTTATTTTAGTCTATCATAAAATA
TATATAAAACAAATGTCAAATACAAATNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTGACAGTATATA
TTAAGTGCTCAAAAGATTTATTTCAGGTTTATTTTAGTCTATCATAAAAT
ATAAAACAAATGTCAAATACAAATGTCAAACATTGGCAAATACGAATAAA
ATATCCTTGTCGTATATATACGACATGCGGCAACACGAGTTAAAATTTGC
ATGTCGTATAAATACGACATCGGCAAATCAGGTTACTAAAAAAAATTACC
CCTCGGCAAATGGATTGGGGTACAAAAACAAGGTACCGGCACGCAAAGGG
TTAATATAATTAATTGAAACCAAGTTTTTCTCAAAGAAAATGTTAAAAAA
ATTCAGTCCTGAAATTACACGCCTTTTTAAATCATGTTTTCAAAAATTGG
CCCGAGTGTGGCCTGCGTGTGGTCCAAACAGAAATCTGCCTCACAGCCTG
AACCCCTCCTTGGTATATATTAGTATACAAAACTTTTCCAGCCAACCCAG
AACAGCCAAAAATATCCAAAAATAGACCTTTTCAGGACCCTCCCGGCACT
CCGGAAATATCCGGAGAAAAAAGTGCCGTTTTTTTGTGCTTCGGAACACC
GGGGAAGATTATGGTGGCCGAATTGCCGTGGTAAAATTTCCTTAGAAAGT
ATGCAAAACATATGCAAAAAGAAAGTATTAATATAGAACTTACATGCATA
ATTGGCATTATATTAAAGTGTAATCTTGTAGAAGAAAGAATAAATTTGCT
TCTTTTGAAAACTAGAAATAATCAAATTCGCCCATCTCTTAGAACAAGCA
CTTCAAAAAACATAACATTAGACATAAACTCAAACTGAAAAATCACCCGC
GAAGGTAAAAAATAATCCTTATTCGGCTGACGGTAAATTATTCTCCTGGG
AATAGAACCGCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATAATTACTGCTTT
CAGTTTGCGTGTTTTGAAAGTTGGTGTGTGTACTCCGTCTTCGTGGAATT
TTTTAATGGCATGAAAACAGAATATGCAATAGACCTTTTCGCCTTTGCGT
CCGCCATATTGAATTGTATGCAAAAATTATGGTTGCCGAATTGCGGTGGT
GAAATTCCCTTAGAAAGTATGCAAAACATATGCAAAAAGAAAGTATTAAA
TAAAAACTTACATGCATAATTGGCATTATATTGAAGTGTNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNCGTCTTCGTGGAATTTCTTAATGGCATGAAAACAGA
ATATGCAATGTCTTTAAGAACAAATTCCTAAAAGGCTTTTGTTGTTCTGT
AAATATTTCCTTTTGGAAATAAAAATCCAACCACGGCATTTTCGTTCCTG
TATTTTTGCATACAATTCAATATGGCGGACGCAAAGGCGAAAAGGTCTAT
GTCTTTAAGAACAAATTCCTAAAAGCCTTTTGTTGTTCGGTAAATATTTC
TTTTTGGATTAAGAAATTCCATCTTTTATTGTTCTAATGATTATAAAATT
TATTTATAAGATGCTTTGTTGTCTTTTTTATCTTTGTGTAAACTTGCATA
TGTTTTGCATATTTTCCAACTAAATCCAACCACAGCTTTTCGTTCCTATA
TTTTTGCATACAATTCAATATGGCGGATGGAAAGGCGAAAAGGTCTATTC
TGGAGCACTTCCAGTGGTGGTGTTCCGGAGCACAATTACCAGTGACTGGT
CGGCACTGGAACTCCAGAATATTCCGATGCGTGCACTTCCGCTAACTGCG
CACGCACGTATTTTTTAAAAATCAGCTGACTCATTGTAGTTTCGATATTG
ACCAGTGATGCTTTTGAATATAGCTAATGTGACAAATTCAATTTCATTAA
TGGCTGAACCATCATCCTCAAAGACTGTACAAGCATTTTATTTGATCAAA
GTGTCCATCACCACCTGGGGGCAAATAATTTTTGTAACCATTTTTAAACG
GTTTTTTAGAACGTGATAAAAATCACTTGCTCTGGAAGCACCAGAAGAGC
TCAGGAACTTTCCGGAGAGAAAAGTTGTCGTGGGTAGATTGTAATGTAAA
TGACTCTCCAGGATTTTTGTACTTTCTCTATTTCCTATCTTCCATTCTAC
TTTCTGATGTTATTCTGAGTTGAACTGTTCTAAGTTATATTCTGACTTTT
TTAACCTATTTCTGAAGTATACTCCCTTACCTCAGCTTGAACCACCAAAT
GCAAGCAACCTTGGTTTCCAAACCCACGGACACGGCAGAAATCGAAACAA
ACAAATACTTTTAGGGTGTAATTTAAAGACTCTATATATAATAGCTCCCA
ATCCTAACGGTGCCCCTAAAAAGGTTGCTATGCAGCCCTATGTTGTGACC
CTCGAGTCCAACCCTGACCCTAACTGAGATAATAACAGAACCCCCGTCTA
AATGGAACCACCATACCCCCGTCTAAACGTTTCTGCATATTGAAAAAATT
TTCGCCTTGGTAGTCATTTACATTCTACCCAACACCGAGAAAAGTAGTGT
TTTTAGCTGCTCCGGGAAACTCCCGCGCGGGGAGGGTCCTACCTTTTTCT
GCCTATTTGCGCCTATTTGCTTTTCTATCTGCCATATTGAATCATATGCT
GAAATACAGGAACGAAAAAGCTGTGATCGAATTTAGTTGGAAAATATGCC
ACAAAAAATATTATGAAATTTTCCACAGAGATTTAAAAGACAACAAAGCA
TCATAATATAAAGCAATATTATACTATTAAGAACAATAAAAGGTGGAATT
TCTTAATTCAGGAAGAAATATTTACAAAAAAAGCCTTTTAGAAGTTTTTA
CCCAAAGACACCTCCGTATTCTGTTTTGATTCCATTAAAAAATGGAATAT
ACGTACCAGACTTTCAAAACACGCAAATTGTAACGTCTCACATTATTTCC
TGTGCAAGAAAATATTAAAACCCTGCTTTGATATACAAGAACAACTGCAA
CACGTTAGAAAAGACCGCTGTAAATCAGGGGGTTCAGATTAATGTTTTGA
TTTGATTATTTTGTGGTGCTATTCCCAGGATAATAATCTACCGTCAGCCC
AATAAGGATTATTATTGTACCTTCACTGGTGATTTTTAAGCTTGAGAATA
AAAAATATAATAAACTAGACTGTGAAATAGTTCACCGCCTAGATATTCAG
GTCAAGTCCAACACTTCTAGCTAGCTAGAGCACAAAAAAGGTACTTTTTT
TGCTACCATTTGCATGGTAACCTAATCAATTTTACACCATAGGCCATCCA
ACCTTTTCACTGTACACCACCAGGGTGTACCATTTTAAGGACTTTTTGCT
TTGTAGACTTCTCTTTTATAAAGAAAATCAATAAATTAAAATTTAAGATT
TAGGCTTCTCCTACAAAAGACTTATTTCATATTTTAAAGAGTTGATGATC
AATCACTAGATTTTAGAATAGGCTCAATTACCTATCGATTATTAAAGTCA
ATCAATGACCAATCCATCTCGTGCAAGCCTAATATTTTTTCCCTTGTGGA
CTTCAGGGGAAAACAGGTGAATGATATTCTTTGAAGGAAGAACTTACGAA
AAGACTTGTTAACAAAAGGATGTCTTTTGAGGCTGTTTGAGGTTTAGACT
GGATCCTATGAAAATGAAGAAAACAAATTACAATGGGTTCTTTTGTAAAC
TCCTAAACTCTAATTTTGTTCTCTTCCTCCCTCAAGCCCTCGTATCTTAG
GGTACGGGTTTTGGGCATCTGAGTCACAAATCAGCAAAAAACTGGTGTTT
TCTGTAAATCTGACAATCCCAAAAAGATCTTCACGGAATATAACAATGTA
AAGCTAAGAACGATGGCCATCTCATATTACATAATGAGTGTTGATTAAAG
TTCCTTAGGTTGAATTTTTATCTTCAAGTACTTTTCATTAATTACTAGCC
ATGTTGAATGCACAAGAAATTATAGAACAAGGTAACAAACCTACTAGTCT
ACCAGATACTGGTGGTCTTAAATTCTTTAAAGTTGACGAGCACGACAAAG
AACAAAAAGAGAGTATTGACTATACATTGGATAATTATGCGCAGTGTCTT
AAAGAGGAGCGTGTGTGCAGAAAAATGAATCTATCAGTTGCTTCTTGGGA
AGATGAACTCTCCCTTGCTCTTGTTACCTCAATGAAAGGAAGTACAGTAC
AAAAATTTGGTTTCCAATCAAAAAATGGTAAATTTCTATACGCTGAAGAA
TGTTTGTTTTTGATGGAGCAAGGCATATTGGAACTTTTTGTGGATGAAAT
CACTTTATCTTTACAAGAGGCTTTCTCTTTGTTGCTTCCTTTACAACCCT
CCTTTGAACATTATCAGATTTATACAAATCTTTGTCGTCAAGGTTTCTTG
GTCAATCGTTACAAACCCTCCTTAAATGAAGATGATATTTCTACTGTAAA
TGAACATAATGAATTTCCAGATACTGAAAAATCATCAGCAGACTTGAATA
AAATTGATATTGATGACACTTTAAAGAAAGGTTATATGAAGGATTTATGG
AAAGGTGACATTACTCCTTTAATGCAACCTTCTGAGTCAACATCTACTGC
AGCCGTTCTTTCAAAGCTGCAAACATCAAAAATGATACATCTTAAAAAAG
ACAGTATGGAAGATAAACACCAAGACCTTCCTAAATTCAAAATCGATTTT
GACGTATACACTTCAAAGGAATTACGTAAACAAAATAAAGATACCAATGC
TTCACCACATTTTCGTGTCACAGTTTGTAAATATGACCAGGACCCACCAA
CGTTCAAAGATTTGTCTCGTTTAACCAAAGAAGCTGCGGGTGTTCACTTA
AAAATAGGTGTGGTAAATCAAGGCACTGTTACTTTTTATGGCATGTTTTC
TACTGACCTTCCAACTGTTATTTCTGTACCGTGAAATATATTTTTCTTTT
TTTTTACACTTTTTCACATTGTTATTTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006717XLOC_006717Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011974-exon-sc0000134-1575043694:204340..204399TCONS_00011974-exon-sc0000134-1575043694:204340..204399Clytia hemisphaericaexon
TCONS_00011974-exon-sc0000134-1575043694:197271..198301TCONS_00011974-exon-sc0000134-1575043694:197271..198301Clytia hemisphaericaexon
TCONS_00011974-exon-sc0000134-1510915933:204340..204399TCONS_00011974-exon-sc0000134-1510915933:204340..204399Clytia hemisphaericaexon
TCONS_00011974-exon-sc0000134-1510915933:197271..198301TCONS_00011974-exon-sc0000134-1510915933:197271..198301Clytia hemisphaericaexon
TCONS_00011974-exon-sc0000134-1491911889:204340..204399TCONS_00011974-exon-sc0000134-1491911889:204340..204399Clytia hemisphaericaexon
TCONS_00011974-exon-sc0000134-1491911889:197271..198301TCONS_00011974-exon-sc0000134-1491911889:197271..198301Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000134supercontigsc0000134:197271..204399 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
22.244	20.6323	10.0652	8.28771	5.4787	3.85783	4.75774	4.9867	1.97273	1.80539	2.68967	1.33945	2.35416	2.91712	3.06064	4.09342	3.23099	3.96161	1.88141	2.05824	3.26685	2.10564	32.976	26.5417	3.45496	4.895	3.47479	5.00338	15.6706	18.4222
Blast
[Close]
BLAST of TCONS_00011974 vs. Swiss-Prot (Human)
Match: SEN54 (tRNA-splicing endonuclease subunit Sen54 OS=Homo sapiens GN=TSEN54 PE=1 SV=3)

HSP 1 Score: 81.2629 bits (199), Expect = 1.008e-16
Identity = 53/159 (33.33%), Postives = 84/159 (52.83%), Query Frame = 3 
Query:   63 MLNAQEIIEQGNKPTSLPD-TGGLKFFKVDEHDKEQKESIDYTLDNYAQCLKEERVCRKMNLSVASWEDELSLALVTSMKGSTVQKFGFQSKNGKFLYAEECLFLMEQGILELFVDEITLSLQEAFSLLLPLQP-SFEHYQIYTNLCRQGFLVNRYKPS 533
            +L+A+E+    ++   LP  + G K F  D     Q E +    +   Q L E+RV R  +L  A W  E     + S  G   Q  GF  +  + L+ EE L+L+E G + LF  ++ LS+QEA+ LLL     +F  YQ++++L R G++V R++PS
Sbjct:   17 VLSARELFAARSRSQKLPQRSHGPKDFLPD-GSAAQAERLRRCREELWQLLAEQRVERLGSLVAAEWRPEEGFVELKSPAGKFWQTMGFSEQGRQRLHPEEALYLLECGSIHLFHQDLPLSIQEAYQLLLTDHTVTFLQYQVFSHLKRLGYVVRRFQPS 174
The following BLAST results are available for this feature:
BLAST of TCONS_00011974 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SEN541.008e-1633.33tRNA-splicing endonuclease subunit Sen54 OS=Homo s... [more]
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