TCONS_00011972 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011972
Unique NameTCONS_00011972
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1546

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011972 ID=TCONS_00011972|Name=TCONS_00011972|organism=Clytia hemisphaerica|type=transcript|length=1546bp
NNTGTTAAACTTCAAATAACCATCTTCACAGGTACAATTGTAGTAGAAAG
GAGCTTCGAAGCTGTTGGTACAGTTAGATGAAGTTTTATTGCAAGTATCT
TTCCCTGTGTCGCAAGGTCTTGGCATCGGCGTACATTTGTCCATGTTGTT
GTCGAGTCTCTCAAAGCCATGTTTACATGGACATTCGTAGTGTCGTCCTT
TGCCAGGAGTAGACATACAAGTTGTAGAGGTTGTATTGCAGGTATCAGCC
TCAATACGACAATACTCATGACATTGATCCAAGGAGCTGTTAAACTTCAA
ATAACCAGCTTCACAGGTACAATTGTAGTAGAAAGGAGCTTCGAAGCTGT
TTGTACAGTTGGATGAAGTTTTATTGCAAGTATCTTTCCCTGTGTCGCAA
GGTCTTGGCATTGGTGTGCAACTGTCTGTGTTGTTATCTAATCTCTCGAA
ACCAAATTTACATGGACATTCATAATGTCGTCCTTTGCCAGGAGTTGCCT
CACACATCGTTGAAGTTTTGTTGCAGGAATCAGCTTCAATATGACAGTAG
TCTTGACAATCATCAACTGAGTTGTTGAATTTGAGATAACCATCACCACA
CGAGCAGTTGAAGTAAACCGGAGCTGTCAAAGTGTTTGTGCAATTGGATC
GTGTCTTGTTACAAGTATCTTTCCCTGTATCACAAGGTCTTGGCATCGGT
GTACATGAGTCCGTGTTGTTATCGAGTCTCTCAAATCCATGTTTACAAGG
ACATTCGTAATGCCGCCCTTTACCAGGTGTCGCCAAACACGTCGTTGATG
TGTCGTTACATGTGTCGGAGTTATCAACGCAAAAGTCGAAACATGTCGTA
TGATTTTGTTTGACATATCCGGCTGAACAGTTACAGTCAAAGTAGTTTGG
ATGCGTGTAAGTATCGATACATGTTGATATATCTTTATCACAAGTATCAT
TTCCCCAAGCACATGGAGTATCGGCTAGTGTGCAGGCGTCAGTGTTGTTG
TCTAGCCTTACGTGTTTATATTTGCAGTCACATTCATAATGACGTCCGTC
GCCGGGTGTTGCGCGACACATTGTCGTGTTATCATCACAAGTATCGTTAT
TTGAGACGCAATAATCCAAACATTGATCAACAGTGTTGTTAAACTTCAGG
TAACCATCGTTACAAGCACAGTTATAATAGATGGGTGCCGTAAAGGTATT
GATGCACGTTGATGTTGAATTATTACACGTGTTCATTGTTGAATTATCAC
ATGGTCGAGGCATTGGTGTACATGTATCAGTACTATTATCTAACCGCTCG
AAACCAAAAGCACAATCACATTCATAATGGCGACCGACCCCTGGTGTTCC
TCTACACACAGTTGATATATTGTTACACGTGTCGATACCATATTCACAAT
AATCTTGACAGATATACACGGTTTTGTTGATGTAGCCTTCAAAACAATCA
CATTGATAATGAGTTAAGAGGTCTGGTGTATCAGTGCAGTTTGATCGCGT
TCGGTTGCATGTGTCTGATTCAAGCTCGCAAATGTAGGtttctaaa
Run BLAST on NCBI

transcript from alignment at sc0000134:176807..180347-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011972 ID=TCONS_00011972|Name=TCONS_00011972|organism=Clytia hemisphaerica|type=transcript|length=3541bp|location=Sequence derived from alignment at sc0000134:176807..180347- (Clytia hemisphaerica)
NNTGTTAAACTTCAAATAACCATCTTCACAGGTACAATTGTAGTAGAAAG
GAGCTTCGAAGCTGTTGGTACAGTTAGATGAAGTTTTATTGCAAGTATCT
TTCCCTGTGTCGCAAGGTCTTGGCATTGGTGTGCAACTGTCTGTGTTGTT
ATCTAACCTCTCAAAACCAAATTTACATGGACATTCATAATGTCGTCCTT
TGCCAGGAGTTGCCTCACACATCGTTGAAGTTTTGTTGCAGGAATCAGCT
TCAATATGACAGTAGTCTTGACACTGATCAACGGAGTTGTTGAATTTGAG
ATAACCATCACCACACGAGCAGTTGTAGTAAACCGGAGCTGTCAAAGTGT
TTGTGCAATTGGATCGTGTCTTGTTACAAGTATCTTTCCCTGTGTCACAA
GGTCTGGGCATCGGTGTACATTTGTCCATGTTGTTATCGAGTCTCTCAAA
ACCAAATCTACACGGACATTCGTAGTGTCGTCCTTTGCCAGGAGTTGCCA
CACAAATCGAAGATGTTTCGTCACAGCTATCAGCTCCGAATTGACAATGA
TCCAAACATTTGTCCAGTGAACCTCCTTGTTTCAGATAACCATCACTGCA
AGAACAGTTATAATAGTCAGGGTTTGTGAAAGTATTGTTACAGGTTGATG
TAGTCATGTTGCAAGTATCTTTCCCTGTGTGGCAAGGTCTTGGCATTGGT
GTGCAACTGTCTGTGTTGTTATCTAACCTCTCGAAACCAAATTTACATGG
ACATTCGAAGTATCTACCAGATCCAGGAGTGGCTTTGCAAGTGGTGGAAG
TTGTGTTGCAGGTGTCGACTCCGAACTGACAATGATCCGAACACTTATCG
AGTGAGCCTCCTTCTTTGAAGTAGCCTGGGTTGCATGAGCAGTTGTAATA
GTCAGGGTTTGTGAAAGTATTGTTACAGGTTGATGTAGTCATGTTGCAAG
TATCTTTCCCTGTGTCGCAAGGTCTTGGCATTGGTGTGCAACTGTCTGTG
TTGTTATCTAACCTCTCGAAACCAAATTTACATGGACATTCATAATGTCG
TCCTTTGCCAGGAGTTGCCTCACACATCGTTGAAGTTTTGTTGCAGGAAT
CAGCTTCAATATGACAGTAGTCTTGACAATCATCAACTGAGTTGTTGAAT
TTGAGATAACCATCACCACACGAGCAGTTGTAGTAAACCGGAGCTGTCAA
AGTGTTTGTGCAATTGGATCGTGTCTTGTTACAAGTATCTTTCCCTGTGT
CACAAGGTCTGGGCATCGGTGTACATTTGTCCATGTTGTTATCGAGTCTC
TCAAAACCAAATCTACACGGACATTCGTAGTGTCGTCCTTTGCCAGGAGT
TGCCACACAAATCGAAGATGTTTCGTCACAGCTATCAGCTCCGAATTGAC
AATGATCCAAACATTTGTCCAGTGAACCTCCTTGTTTCAGATAACCATCA
CTGCAAGAACAGTTATAATAGTCAGGGTTTGTGAAAGTATTGTTACAGGT
TGATGTAGTCATGTTGCAAGTATCTTTCCCTGTGTGGCAAGGTCTTGGCA
TTGGTGTGCAACTGTCTGTGTTGTTATCTAACCTCTCGAAACCAAATTTA
CATGGACATTCGAAGTATCTACCAGATCCAGGAGTGGCTTTGCAAGTGGT
GGAAGTTGTGTTGCAGGTGTCGACTCCGAACTGACAATGATCCGAACACT
TATCGAGTGAGCCTCCTTCTTTGAAGTAGCCTGGGTTGCATGAGCAGTTG
TAATAGTCAGGGTTTGTGAAAGTATTGTTACAGGTTGATGTAGTCATATT
GCAAGTATCTTTCCCTGTGTCGCAAGGTCTCGGCATTGGTGTGCAACTGT
CTGTGTTGTTATCTAATCTCTCGAAACCAAATTTACATGGACATTCATAA
TGTCGTCCTTTACCAGGAGTTGCCTCACACATCGTTGAAGTTTTGTTGCA
GGAATCAGCTTCAATATGACAGTAGTCTTGACAATCATCAACGGAGTTGT
TGAATTTGAGATAACCATCACCACACGAGCAGTTGAAGTAAACCGGAGCT
GTCAAAGTGTTTGTGCAATTGGATCTTGTCTTGTTACAAGTATCTTTCCC
TGTGTCACAAGGTCTTGGCATCGGCGTACATTTGTCCATGTTGTTGTCGA
GTCTCTCAAAGCCATGTTTACATGGACATTCGTAGTGTCGTCCTTTGCCA
GGAGTAGACATACAAGTTGTAGAGGTTGTATTGCAGGTATCAGCCTCAAT
ACGACAATACTCATGACATTGATCCAAGGAGCTGTTAAACTTCAAATAAC
CAGCTTCACAGGTACAATTGTAGTAGAAAGGAGCTTCGAAGCTGTTTGTA
CAGTTGGATGAAGTTTTATTGCAAGTATCTTTCCCTGTGTCGCAAGGTCT
TGGCATTGGTGTGCAACTGTCTGTGTTGTTATCTAATCTCTCGAAACCAA
ATTTACATGGACATTCATAATGTCGTCCTTTGCCAGGAGTTGCCTCACAC
ATCGTTGAAGTTTTGTTGCAGGAATCAGCTTCAATATGACAGTAGTCTTG
ACAATCATCAACTGAGTTGTTGAATTTGAGATAACCATCACCACACGAGC
AGTTGAAGTAAACCGGAGCTGTCAAAGTGTTTGTGCAATTGGATCGTGTC
TTGTTACAAGTATCTTTCCCTGTATCACAAGGTCTTGGCATCGGTGTACA
TGAGTCCGTGTTGTTATCGAGTCTCTCAAATCCATGTTTACAAGGACATT
CGTAATGCCGCCCTTTACCAGGTGTCGCCAAACACGTCGTTGATGTGTCG
TTACATGTGTCGGAGTTATCAACGCAAAAGTCGAAACATGTCGTATGATT
TTGTTTGACATATCCGGCTGAACAGTTACAGTCAAAGTAGTTTGGATGCG
TGTAAGTATCGATACATGTTGATATATCTTTATCACAAGTATCATTTCCC
CAAGCACATGGAGTATCGGCTAGTGTGCAGGCGTCAGTGTTGTTGTCTAG
CCTTACGTGTTTATATTTGCAGTCACATTCATAATGACGTCCGTCGCCGG
GTGTTGCGCGACACATTGTCGTGTTATCATCACAAGTATCGTTATTTGAG
ACGCAATAATCCAAACATTGATCAACAGTGTTGTTAAACTTCAGGTAACC
ATCGTTACAAGCACAGTTATAATAGATGGGTGCCGTAAAGGTATTGATGC
ACGTTGATGTTGAATTATTACACGTGTTCATTGTTGAATTATCACATGGT
CGAGGCATTGGTGTACATGTATCAGTACTATTATCTAACCGCTCGAAACC
AAAAGCACAATCACATTCATAATGGCGACCGACCCCTGGTGTTCCTCTAC
ACACAGTTGATATATTGTTACACGTGTCGATACCATATTCACAATAATCT
TGACAGATATACACGGTTTTGTTGATGTAGCCTTCAAAACAATCACATTG
ATAATGAGTTAAGAGGTCTGGTGTATCAGTGCAGTTTGATCGCGTTCGGT
TGCATGTGTCTGATTCAAGCTCGCAAATGTAGGTTTCTAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006716XLOC_006716Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011972-exon-sc0000134-1575043694:180232..180347TCONS_00011972-exon-sc0000134-1575043694:180232..180347Clytia hemisphaericaexon
TCONS_00011972-exon-sc0000134-1575043694:176807..178236TCONS_00011972-exon-sc0000134-1575043694:176807..178236Clytia hemisphaericaexon
TCONS_00011972-exon-sc0000134-1510915933:180232..180347TCONS_00011972-exon-sc0000134-1510915933:180232..180347Clytia hemisphaericaexon
TCONS_00011972-exon-sc0000134-1510915933:176807..178236TCONS_00011972-exon-sc0000134-1510915933:176807..178236Clytia hemisphaericaexon
TCONS_00011972-exon-sc0000134-1491911889:180232..180347TCONS_00011972-exon-sc0000134-1491911889:180232..180347Clytia hemisphaericaexon
TCONS_00011972-exon-sc0000134-1491911889:176807..178236TCONS_00011972-exon-sc0000134-1491911889:176807..178236Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000134supercontigsc0000134:176807..180347 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.00303	1.88234	1.63223	0	8.3957	4.73108	1.42996	3.75208	2.11495	4.68701	0	2.06264	0	0	0	0	1.49295	1.18601	0	0.130453	8.83493	4.41334	0.674432	3.00068	2.32875	2.70528	1.15748	0	0.944422	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000742EGF-like_dom
IPR013032EGF-like_CS
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00011972 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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