TCONS_00011966 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011966
Unique NameTCONS_00011966
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length255

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011966 ID=TCONS_00011966|Name=TCONS_00011966|organism=Clytia hemisphaerica|type=transcript|length=255bp
GGTCAAGTTTCTATTGATGATATACTCGCATATAAATAGAGGTTGAGCTT
GGAATCAGTATACATCGAACAATCGATAGAGAAACATCTTAAGAAGTACA
GCGCAGgacacttgaaaaaaaatctttcaaacaacATCAAATACGTCTCC
AAAAGGGACCAATAATATCTACAAACTTGTTTTAAAGaatCGCAACAGAC
AAATCAACAGCAACAAAATGCCAGGATTAAACTCAGTCAGCGATAAACAC
GTCGN
Run BLAST on NCBI

transcript from alignment at sc0000134:75978..76483-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011966 ID=TCONS_00011966|Name=TCONS_00011966|organism=Clytia hemisphaerica|type=transcript|length=506bp|location=Sequence derived from alignment at sc0000134:75978..76483- (Clytia hemisphaerica)
GGTCAAGTTTCTATTGATGATATACTCGCATATAAATAGAGGTTGAGCTT
GGAATCAGTATACATCGAACAATCGATAGAGAAACATCTTAAGAAGTACA
GCGCAGGACACTTGAAAAAAAATCTTTCAAACAACATCAAATACGTCTCC
AAAAGGGACCAATAATATCTACAAACTTGTTTTAAAGGTAAGGAACGCAT
TTTTTTTGTTTTTTTTTCATTTGCCATTCTTTTGAGTTAAAGGGTGAAAA
CCCACTCCTAATATTAAAATATGAGCATAGGGCGAGGTTTGAACCACACT
CGCCCTGCATCTAGTCAACTGTGTGTTTCACATTTTTTCAAACTTTACAC
AGAGCAAAAATCTCAGCTGAGATCATCATATAAAAAAAACACAAGTAATT
TCAAACGAAAATTTTAATTTCTAATATTTTTTCTTCAGAATCGCAACAGA
CAAATCAACAGCAACAAAATGCCAGGATTAAACTCAGTCAGCGATAAACA
CGTCGN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006714XLOC_006714Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011966-exon-sc0000134-1575043694:76297..76483TCONS_00011966-exon-sc0000134-1575043694:76297..76483Clytia hemisphaericaexon
TCONS_00011966-exon-sc0000134-1575043694:75978..76045TCONS_00011966-exon-sc0000134-1575043694:75978..76045Clytia hemisphaericaexon
TCONS_00011966-exon-sc0000134-1510915933:76297..76483TCONS_00011966-exon-sc0000134-1510915933:76297..76483Clytia hemisphaericaexon
TCONS_00011966-exon-sc0000134-1510915933:75978..76045TCONS_00011966-exon-sc0000134-1510915933:75978..76045Clytia hemisphaericaexon
TCONS_00011966-exon-sc0000134-1491911889:76297..76483TCONS_00011966-exon-sc0000134-1491911889:76297..76483Clytia hemisphaericaexon
TCONS_00011966-exon-sc0000134-1491911889:75978..76045TCONS_00011966-exon-sc0000134-1491911889:75978..76045Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000134supercontigsc0000134:75978..76483 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	1.51074	1.82264	5.97216	5.37589	14.0577	22.2625	2.83248	1.8857	0	0	0.863888	2.6606	4.36324	0.753507	15.7698	0	0	2.43821	4.43337	14.4598	222.782	103.999	91.2819	256.481	111.419
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00011966 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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