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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011962 ID=TCONS_00011962|Name=TCONS_00011962|organism=Clytia hemisphaerica|type=transcript|length=5385bpRun BLAST on NCBI transcript from alignment at sc0000134:403478..420182+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00011962 ID=TCONS_00011962|Name=TCONS_00011962|organism=Clytia hemisphaerica|type=transcript|length=16705bp|location=Sequence derived from alignment at sc0000134:403478..420182+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00011962 vs. Swiss-Prot (Human)
Match: TRAF4 (TNF receptor-associated factor 4 OS=Homo sapiens GN=TRAF4 PE=1 SV=1) HSP 1 Score: 263.848 bits (673), Expect = 5.741e-76 Identity = 155/472 (32.84%), Postives = 234/472 (49.58%), Query Frame = 2
Query: 206 LGGYDADFVNGLPTEYECPICQMAFKDPVQLEECGHRFCQSCLNEIKRRQNGGILTCPLDRQEVDPDKVFLDKAARRAVLGLMIKCDNAKRKCDWTGELSTIEDHLKTCPYADIMCPNEQCQDSFPRRALQNHLQSRCKFRILACQFC-----------------------KEKC-------------------------------VYKDIKTHMKQCKRVPLECINKCGVKDIPREEMGAHI-NECPLSVLPCPYSDIGCPYKGRKDVLDEHVRLTVNDHLAMAVAKV-----------RANESRSICTNGLFIWPIKNFRAQFEAAKLSDEELAIFSQPFYTSQYGYKLRIKAYLNGRDRGKGTHLSLYLIIMKGEYDALLEWPFNQKITFYLLDQGD----QRKHKVHQLSPNRSLPNVRAVFNKPSG------KENLGIGNPSFVSHEVIDAGDYVHDNTIYIKCEIE 1393
+ G+D F+ CP+C ++PVQ+ CGHRFC +CL E + G+ CP D+ +D K++ D VLGL I+C +++ C W+G L ++ HL TC + I CPN +C RR L HLQ C R L C+FC + KC V+ I++H QC R+P+ C N+CGV + RE++ H+ + C +++ CP+ D GC ++ K + HV +V HLAM A V R E S+ ++G+ IW I ++ + + AK + L FS FYT +YGYKL++ A+LNG G+GTHLSLY+ ++ G +D LLEWPF +++TF LLDQ D + +H P+ + N F KP + +LG G P F+SH+ I +YV D+ ++I+ +E
Sbjct: 1 MPGFDYKFLEKPKRRLLCPLCGKPMREPVQVSTCGHRFCDTCLQEF---LSEGVFKCPEDQLPLDYAKIYPDPELEVQVLGLPIRCIHSEEGCRWSGPLRHLQGHLNTCSFNVIPCPN-RCPMKLSRRDLPAHLQHDCPKRRLKCEFCGCDFSGEAYESHEGMCPQESVYCENKCGARMMRRLLAQHATSECPKRTQPCTYCTKEFVFDTIQSHQYQCPRLPVACPNQCGVGTVAREDLPGHLKDSCNTALVLCPFKDSGCKHRCPKLAMARHVEESVKPHLAMMCALVSRQRQELQELRRELEELSVGSDGVLIWKIGSYGRRLQEAK-AKPNLECFSPAFYTHKYGYKLQVSAFLNGNGSGEGTHLSLYIRVLPGAFDNLLEWPFARRVTFSLLDQSDPGLAKPQHVTETFHPDPNWKN----FQKPGTWRGSLDESSLGFGYPKFISHQDIRKRNYVRDDAVFIRAAVE 463 The following BLAST results are available for this feature:
BLAST of TCONS_00011962 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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