TCONS_00011950 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011950
Unique NameTCONS_00011950
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1874

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011950 ID=TCONS_00011950|Name=TCONS_00011950|organism=Clytia hemisphaerica|type=transcript|length=1874bp
CGTAGAgattttgtttgttattttttggaaagaaactTCTTTTTGTAAAC
CTTTCAGCATTGGTTCTTAGTATTGAATTAAATTTGAGTGAGAAAAAAGC
GAAGACTAAGGAATTATTATGGTTATATTAGGTATGGATGTTGCACAAAG
TGGACATGTGTTCCAACCACCTATGGGACCACCTCCGAGCTCTCTTAGCG
AAAAGTCAGCTATTTTGCAGCAGCAGTCGGTCATTCAAACAAATCAACAA
TTACAGCAGCAACTTCAATCAATGCACGATAATGCTGAAAATAACAGGCA
GAAAAGTAGAGAGATACTGACTCGGAGGCCTTCCTACagAAAAATTCTTG
ATGACCTGGCAGCAGATTCTCCAGTCAAAATGGAAAACTATGATGATAAT
GGAAGTAGTGATGCTTCAAGTCCTGGTGGACCAGAAGAATTGACAGATAA
ACAACAACAAGCTCAACAGCAACATCAGCACCAGCAACAACAGCAACAGG
CTCAGCAACAAGCACAACAACAATATCAAAGTATTCAACTCAATGGCGTA
ATTGCTCCCCCATCTTCAGTTGGTGGCACAGTGGTTCAGCTAAATGATGG
CCAGGCTTACACAATAAAAGGTTCTCTTCCTGTTGGATTGGAAAGTGCAA
CGCTAGCGTCTCCTCAACAAATGGCAGAAGAAGCAACTAGGAAAAGAGAA
CTAAGGTTATACAAAAATAGgGAAGCAGCCAGAGAATGCAGGCGGaagaa
aaaagaatatgtaaaATGTCTAGAAAATAGAGTTGCAGTACTAGAAAACC
AAAATAAAGCTCTAATAGAAGAACTAAAATCTCTAAAGGACTTATACTGT
AGTAAAGGAGATTAAGTTGGTGGTTTGTGTCATAATATAGAGCTGATGTT
TGTAAATAGACGTATGTTTTAGAGTTTTTATGgtttaaatatcttttttc
ttAACTGATgactaaaaacaacaaaatgatatttttattaGCACTTTAGA
AGGATATTATTTTTcatatgaatttaaaaaaagtgaaatcttATTTGTTA
AGTGTACAAAAATTTGGAGTGGAGTGGGTCAGCCTTACTTTCTTTGCATG
AATCAATTGCACACTAATTTACAATCAACGTAATTCCTTATCCTGGACAA
GGAAATGAGTGATTTAGCTgaattatattttcattttaattacTTTCTTA
TCTGTTTAGCTCAACAGTTTGTTATCCTCAGAGCAAACTTTTTAAGATGA
CATCAAATATTATTTCGgccaatttttcatttattttcaaaacccATGTT
GCAATTTTCCTGATGTCATATTGACTGTTTGTTTTATGATTAAATCTGTT
TACAAATTTGTTCCCTAAACAAGATGATGTTTTCATCTAAATGGATTTct
aaacgtcaattgacgtcaAGTATCGTTAAAGTGGCTTAAGACCCTTCACT
TAGATTTTGTGCACGGTTAATAATAATGTATTATTTTTCagtttatatat
attttttatcgtCTCAATTTATCCACTTTTCgtgcttttctttctttttt
tttgtcatggGAATTTTGGAATTGTTTGTTAAGTCCTACCCAGTTCCatg
ttttatttgtttcaatattCTGGTGTTTTTGCTTTGGTNGTCCTACCCAG
TTCCatgttttatttgtttcaatattCTGGTGTTTTTGCTTTGGTATGCa
ttagtttttttatatatttgtttGTCTGTTTTTGAGCCTGTATTAATACT
GTAAATATTTTACATTATCTCGATAATATTAATAACTAGTCCTTTCCGTG
ACAAACTTATTATTGTACATACAATATACCTGTATCCTTACAaccaaaat
acaaaattattaCCAAATTAAACT
Run BLAST on NCBI

protein sequence of TCONS_00011950-protein

>TCONS_00011950-protein ID=TCONS_00011950-protein|Name=TCONS_00011950-protein|organism=Clytia hemisphaerica|type=polypeptide|length=248bp
MVILGMDVAQSGHVFQPPMGPPPSSLSEKSAILQQQSVIQTNQQLQQQLQ
SMHDNAENNRQKSREILTRRPSYRKILDDLAADSPVKMENYDDNGSSDAS
SPGGPEELTDKQQQAQQQHQHQQQQQQAQQQAQQQYQSIQLNGVIAPPSS
VGGTVVQLNDGQAYTIKGSLPVGLESATLASPQQMAEEATRKRELRLYKN
REAARECRRKKKEYVKCLENRVAVLENQNKALIEELKSLKDLYCSKGD
Run BLAST on NCBI

transcript from alignment at sc0000134:267815..272534+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011950 ID=TCONS_00011950|Name=TCONS_00011950|organism=Clytia hemisphaerica|type=transcript|length=4720bp|location=Sequence derived from alignment at sc0000134:267815..272534+ (Clytia hemisphaerica)
CGTAGAgattttgtttgttattttttggaaagaaactTCTTTTTGTAAAC
CTTTCAGCATTGGTTCTTAGTATTGAATTAAATTTGAGTGAGAAAAAAGC
GAAGACTAAGGAATTATTATGGTTATATTAGGTAtgcttttttaaaattt
ttacttcaattAAACTTTCAAATATATTGTGAATTTATTGTCTGATTGGT
TTAATTATTTATTATATCAGGTATGGATGTTGCACAAAGTGGACATGTGT
TCCAACCACCTATGGGACCACCTCCGAGCTCTCTTAGCGAAAAGTCAGCT
ATTTTGCAGCAGCAGTCGGTCATTCAAACAAATCAACAATTACAGCAGCA
ACTTCAATCAATGCACGATAATGCTGAAAATAACAGGCAGAAAAGTAGAG
AGATACTGACTCGGAGGCCTTCCTACaggtatttcaaatttttttatacc
TGTTGCTTTATGTACCGTGAGATTGTACAAAATCGCGCATGTTCACGTGC
GCAATTTCGTAAAAATTTTGTCTTTATTACGTGAGTGATTCGTCGCTCTC
CACTCCTCCTTATTTCTTCCTGGAAAAgcatgtaaaatacaaagttaaat
aaaaacaaaaatggtagagtagagctgcgagcagagctgcacagttgcat
tttttaaTGATCAGCCCTAGGTCTTTTAttttagggctatgcatgttagc
ttccactgatgtaagttacccaatctcacggtagtaAAGCTAGACAAATT
TTTGGACCTGCAcatagttttttgtttgtttttatttttgcgcGTAAAAC
TTATGCCAGTTATTAGGAACAGGCAGCTTGCTTGGAATTGGGTTGAAGAA
TCCCTTGCAAATCATGAGCTTATTTTTCCCCTTTTTAACTGGTTTAAGTG
ATGATTTGTTGGAGATCATGAAAGTATATTTCATTTTATGGTGAATATCA
CCAggttttttaagatgaaaatctTCCTTTTTATCTAGGAAAATTCTTGA
TGACCTGGCAGCAGATTCTCCAGTCAAGATGGAAAACTATGATGATAATG
GAAGTAGTAATTCTTCAAGTCCTGGTGGACCAGAAGAATTGACAGATAAA
CAACAACAAGCTCAACAGCAACATCAGCACCAGCAACAACAGCAACAGGC
TCAGCAACAAGCACAACAACAANTTTCTGACCGCGTTATCACCATGTTCC
AATGAATGACGTCATGTTTGGAAAACAATTCGAATCAGAAGAGCTTTGAT
TGGTTGGCATTGTTAGTTATTGGTTTTACATACTAGAATATAATTATATA
CAAATGTTGAAGAGAAACCCTGGTAAAAGCAACCAAGAGTTACATCCTGA
CGATCTGATTGGTTAATATTTGATGACGCCCGCCTACGTCAACGATCTTG
TTCgaccaaatttcttttcttctcaAGAAGTGACGTTAGGGAATGTGACG
CAGTTTTCATCATACAGCTAACACGCAAGAAGTCAAAACGTAACAAACCG
AACAGTAAGAATTCATTATACTTGTATACTGTATTTGAACCTGAACGTAG
AgattttgtttgttattttttggaaagaaactTCTTTTTGTAAACCTTTC
AGCATTGGTTCTTAGTATTGAATTAAATTTGAGTGAGAAAAAAGCGAAGA
CTAAGAATTATTATGGTTATATTAGGTatgcttttttaaaaattttactt
cAATTAAACTTTCAAATATATTGTGAATTTATTATATGATTGGTTTAATT
ATTTATTATATCAGGTATGGATGTTGCACAAAGTGGACATGTGTTCCAAC
CACCTATGGGACCACCACCGAGCTCTCTTAGTGAAAAGTCAGCTATTTTG
CAGCAGCAGTCGGTCATTCAAACAAATCAACAATTACAGCAGCAACTTCA
ATCGATGCATGATAATGCTGAAAATAACAGGCAGAAAAGTAGAGAGATAC
TGACTCGGAGGCCTTCCTACaggtatttcaatttttttttatacctGTTG
CTTtatgtaccgtgagattgggtaacttttgcatcagtggaggctaacat
gcatagccctcaaatgaaagacctgactggtcattaaaatcGTGCCTTTC
AATAAGACGTGCGCGATCGCGCTCGCGATGTAAAACGCTCGTCAATCTCG
TATGGTGAGCGAAAAATTGTGCATGTCAATTATACTTTGATTCTATAGAA
AAATATCTAAGGGCGTTTTGTACAAAATCGTGCACGTGAACGTGCGCAAT
TTCGTAAAAATTTTGTCTTTATTACGTGAGTGATTCGTTGCTCTCCTCCT
TATTTCTTCCTGGAAAAgcatgtaaaatacaaagttaaataaaaacaaaa
atggtagagtagagctgcgagcagagctgcgtagttgtattttttaatga
TCGGCCAGGTCTTTTAttttagggctatgcatgttagcctccactgatgt
aagttacccaatctcactgTAGTAAAGCTAGACAAATTTTTGGACCTGCA
catagtttttgtttgtttttatttttgcgcGTAAAATTTATGCAAGTTAT
TAGGAACAGGCAGCTTGCTTGGAATTGGGTTGAAGAATGCCTTGCAAATT
ATGAGCTTATTTTTCCCCTTTTTAACTGGTTTAAGTGATGATTTGTTGGA
GATCATGAAAGTATATTTCATTTTATGGTGTATATCACCAGGTTTTTTAG
ATGAAAATCTTCCTTTTTATCTAGAAAAATTCTTGATGACCTGGCAGCAG
ATTCTCCAGTCAAAATGGAAAACTATGATGATAATGGAAGTAGTGATGCT
TCAAGTCCTGGTGGACCAGAAGAATTGACAGATAAACAACAACAAGCTCA
ACAGCAACATCAGCACCAGCAACAACAGCAACAGGCTCAGCAACAAGCAC
AACAACAATATCAAAGTATTCAACTCAATGGCGTAATTGCTCCCCCATCT
TCAGTTGGTGGCACAGTGGTTCAGCTAAATGATGGCCAGGTACGTAGAAT
TTAATGGATGAACATAATTCTGCTAGTGTAATACCGGACGTTGGTCTAAT
TCCGCTCATCTTTAGATAAGAAGAAATAGAGATATGCATCTtactaaatt
tcaaattttacttttcagGCTTACACAATAAAAGGTTCTCTTCCTGTTGG
ATTGGAAAGTGCAACGCTAGCGTCTCCTCAACAAATGGCAGAAGAAGCAA
CTAGGAAAAGAGAACTAAGGTTATACAAAAATAGGTAAATATTGCTTGAT
TTTTACAataattttcaccattttatcaAGAACAGTTTCTAAATCTGAAA
CTGAATTTCTTTAACAAATTTAGAAAGTTAGCAGAAAACACCAGATACCA
AATTAAGGCATCGCATTTGCAATTTGTGATGCATTTTATGGATTtcttac
aagctaaaaatttaTCTATTTCAGGATGAAAAAACTATGCTTGCTAAATT
CAATGCATGAAATACTGCTGTTAACCAAACAGCTGATTGATCTTGAATTT
AAAGCTCCAAATCAGCATTTTAGTCAGTATAACATTAACtaaatttatga
ttttgttcatttttaggGAAGCAGCCAGAGAATGCAGGCGGaagaaaaaa
gaatatgtaaaATGTCTAGAAAATAGAGTTGCAGTACTAGAAAACCAAAA
TAAAGCTCTAATAGAAGAACTAAAATCTCTAAAGGACTTATACTGTAGTA
AAGGAGATTAAGTTGGTGGTTTGTGTCATAATATAGAGCTGATGTTTGTA
AATAGACGTATGTTTTAGAGTTTTTATGgtttaaatatcttttttcttAA
CTGATgactaaaaacaacaaaatgatatttttattaGCACTTTAGAAGGA
TATTATTTTTcatatgaatttaaaaaaagtgaaatcttATTTGTTAAGTG
TACAAAAATTTGGAGTGGAGTGGGTCAGCCTTACTTTCTTTGCATGAATC
AATTGCACACTAATTTACAATCAACGTAATTCCTTATCCTGGACAAGGAA
ATGAGTGATTTAGCTgaattatattttcattttaattacTTTCTTATCTG
TTTAGCTCAACAGTTTGTTATCCTCAGAGCAAACTTTTTAAGATGACATC
AAATATTATTTCGgccaatttttcatttattttcaaaacccATGTTGCAA
TTTTCCTGATGTCATATTGACTGTTTGTTTTATGATTAAATCTGTTTACA
AATTTGTTCCCTAAACAAGATGATGTTTTCATCTAAATGGATTTctaaac
gtcaattgacgtcaAGTATCGTTAAAGTGGCTTAAGACCCTTCACTTAGA
TTTTGTGCACGGTTAATAATAATGTATTATTTTTCagtttatatatattt
tttatcgtCTCAATTTATCCACTTTTCgtgcttttctttctttttttttg
tcatggGAATTTTGGAATTGTTTGTTAAGTCCTACCCAGTTCCatgtttt
atttgtttcaatattCTGGTGTTTTTGCTTTGGTNGTCCTACCCAGTTCC
atgttttatttgtttcaatattCTGGTGTTTTTGCTTTGGTATGCattag
tttttttatatatttgtttGTCTGTTTTTGAGCCTGTATTAATACTGTAA
ATATTTTACATTATCTCGATAATATTAATAACTAGTCCTTTCCGTGACAA
ACTTATTATTGTACATACAATATACCTGTATCCTTACAaccaaaatacaa
aattattaCCAAATTAAACT

Coding sequence (CDS) from alignment at sc0000134:267815..272534+

>TCONS_00011950 ID=TCONS_00011950|Name=TCONS_00011950|organism=Clytia hemisphaerica|type=CDS|length=4482bp|location=Sequence derived from alignment at sc0000134:267815..272534+ (Clytia hemisphaerica)
ATGGTTATATTAGGTATGGATGTTGCACAAAGTGGACATGTGTTCCAACC
ACCTATGGGACCACCTCCGAGCTCTCTTAGCGAAAAGTCAGCTATTTTGC
AGCAGCAGTCGGTCATTCAAACAAATCAACAATTACAGCAGCAACTTCAA
TCAATGCACGATAATGCTGAAAATAACAGGCAGAAAAGTAGAGAGATACT
GACTCGGAGGCCTTCCTACagAAAAATTCTTGATGACCTGGCAGCAGATT
CTCCAGTCAAAATGGAAAACTATGATGATAATGGAAGTAGTGATGCTTCA
AGTCCTGGTGGACCAGAAGAATTGACAGATAAACAACAACAAGCTCAACA
GCAACATCAGCACCAGCAACAACAGCAACAGGCTCAGCAACAAGCACAAC
AACAATATCAAAGTATTCAACTCAATGGCGTAATTGCTCCCCCATCTTCA
GTTGGTGGCACAGTGGTTCAGCTAAATGATGGCCAGGCTTACACAATAAA
AGGTTCTCTTCCTGTTGGATTGGAAAGTGCAACGCTAGCGTCTCCTCAAC
AAATGGCAGAAGAAGCAACTAGGAAAAGAGAACTAAGGTTATACAAAAAT
AGgGAAGCAGCCAGAGAATGCAGGCGGaagaaaaaagaatatgtaaaATG
TCTAGAAAATAGAGTTGCAGTACTAGAAAACCAAAATAAAGCTCTAATAG
AAGAACTAAAATCTCTAAAGGACTTATACTGTAGTAAAGGAGATTAAATG
GTTATATTAGGTATGGATGTTGCACAAAGTGGACATGTGTTCCAACCACC
TATGGGACCACCTCCGAGCTCTCTTAGCGAAAAGTCAGCTATTTTGCAGC
AGCAGTCGGTCATTCAAACAAATCAACAATTACAGCAGCAACTTCAATCA
ATGCACGATAATGCTGAAAATAACAGGCAGAAAAGTAGAGAGATACTGAC
TCGGAGGCCTTCCTACagAAAAATTCTTGATGACCTGGCAGCAGATTCTC
CAGTCAAAATGGAAAACTATGATGATAATGGAAGTAGTGATGCTTCAAGT
CCTGGTGGACCAGAAGAATTGACAGATAAACAACAACAAGCTCAACAGCA
ACATCAGCACCAGCAACAACAGCAACAGGCTCAGCAACAAGCACAACAAC
AATATCAAAGTATTCAACTCAATGGCGTAATTGCTCCCCCATCTTCAGTT
GGTGGCACAGTGGTTCAGCTAAATGATGGCCAGGCTTACACAATAAAAGG
TTCTCTTCCTGTTGGATTGGAAAGTGCAACGCTAGCGTCTCCTCAACAAA
TGGCAGAAGAAGCAACTAGGAAAAGAGAACTAAGGTTATACAAAAATAGg
GAAGCAGCCAGAGAATGCAGGCGGaagaaaaaagaatatgtaaaATGTCT
AGAAAATAGAGTTGCAGTACTAGAAAACCAAAATAAAGCTCTAATAGAAG
AACTAAAATCTCTAAAGGACTTATACTGTAGTAAAGGAGATTAAATGGTT
ATATTAGGTATGGATGTTGCACAAAGTGGACATGTGTTCCAACCACCTAT
GGGACCACCTCCGAGCTCTCTTAGCGAAAAGTCAGCTATTTTGCAGCAGC
AGTCGGTCATTCAAACAAATCAACAATTACAGCAGCAACTTCAATCAATG
CACGATAATGCTGAAAATAACAGGCAGAAAAGTAGAGAGATACTGACTCG
GAGGCCTTCCTACagAAAAATTCTTGATGACCTGGCAGCAGATTCTCCAG
TCAAAATGGAAAACTATGATGATAATGGAAGTAGTGATGCTTCAAGTCCT
GGTGGACCAGAAGAATTGACAGATAAACAACAACAAGCTCAACAGCAACA
TCAGCACCAGCAACAACAGCAACAGGCTCAGCAACAAGCACAACAACAAT
ATCAAAGTATTCAACTCAATGGCGTAATTGCTCCCCCATCTTCAGTTGGT
GGCACAGTGGTTCAGCTAAATGATGGCCAGGCTTACACAATAAAAGGTTC
TCTTCCTGTTGGATTGGAAAGTGCAACGCTAGCGTCTCCTCAACAAATGG
CAGAAGAAGCAACTAGGAAAAGAGAACTAAGGTTATACAAAAATAGgGAA
GCAGCCAGAGAATGCAGGCGGaagaaaaaagaatatgtaaaATGTCTAGA
AAATAGAGTTGCAGTACTAGAAAACCAAAATAAAGCTCTAATAGAAGAAC
TAAAATCTCTAAAGGACTTATACTGTAGTAAAGGAGATTAAATGGTTATA
TTAGGTATGGATGTTGCACAAAGTGGACATGTGTTCCAACCACCTATGGG
ACCACCTCCGAGCTCTCTTAGCGAAAAGTCAGCTATTTTGCAGCAGCAGT
CGGTCATTCAAACAAATCAACAATTACAGCAGCAACTTCAATCAATGCAC
GATAATGCTGAAAATAACAGGCAGAAAAGTAGAGAGATACTGACTCGGAG
GCCTTCCTACagAAAAATTCTTGATGACCTGGCAGCAGATTCTCCAGTCA
AAATGGAAAACTATGATGATAATGGAAGTAGTGATGCTTCAAGTCCTGGT
GGACCAGAAGAATTGACAGATAAACAACAACAAGCTCAACAGCAACATCA
GCACCAGCAACAACAGCAACAGGCTCAGCAACAAGCACAACAACAATATC
AAAGTATTCAACTCAATGGCGTAATTGCTCCCCCATCTTCAGTTGGTGGC
ACAGTGGTTCAGCTAAATGATGGCCAGGCTTACACAATAAAAGGTTCTCT
TCCTGTTGGATTGGAAAGTGCAACGCTAGCGTCTCCTCAACAAATGGCAG
AAGAAGCAACTAGGAAAAGAGAACTAAGGTTATACAAAAATAGgGAAGCA
GCCAGAGAATGCAGGCGGaagaaaaaagaatatgtaaaATGTCTAGAAAA
TAGAGTTGCAGTACTAGAAAACCAAAATAAAGCTCTAATAGAAGAACTAA
AATCTCTAAAGGACTTATACTGTAGTAAAGGAGATTAAATGGTTATATTA
GGTATGGATGTTGCACAAAGTGGACATGTGTTCCAACCACCTATGGGACC
ACCTCCGAGCTCTCTTAGCGAAAAGTCAGCTATTTTGCAGCAGCAGTCGG
TCATTCAAACAAATCAACAATTACAGCAGCAACTTCAATCAATGCACGAT
AATGCTGAAAATAACAGGCAGAAAAGTAGAGAGATACTGACTCGGAGGCC
TTCCTACagAAAAATTCTTGATGACCTGGCAGCAGATTCTCCAGTCAAAA
TGGAAAACTATGATGATAATGGAAGTAGTGATGCTTCAAGTCCTGGTGGA
CCAGAAGAATTGACAGATAAACAACAACAAGCTCAACAGCAACATCAGCA
CCAGCAACAACAGCAACAGGCTCAGCAACAAGCACAACAACAATATCAAA
GTATTCAACTCAATGGCGTAATTGCTCCCCCATCTTCAGTTGGTGGCACA
GTGGTTCAGCTAAATGATGGCCAGGCTTACACAATAAAAGGTTCTCTTCC
TGTTGGATTGGAAAGTGCAACGCTAGCGTCTCCTCAACAAATGGCAGAAG
AAGCAACTAGGAAAAGAGAACTAAGGTTATACAAAAATAGgGAAGCAGCC
AGAGAATGCAGGCGGaagaaaaaagaatatgtaaaATGTCTAGAAAATAG
AGTTGCAGTACTAGAAAACCAAAATAAAGCTCTAATAGAAGAACTAAAAT
CTCTAAAGGACTTATACTGTAGTAAAGGAGATTAAATGGTTATATTAGGT
ATGGATGTTGCACAAAGTGGACATGTGTTCCAACCACCTATGGGACCACC
TCCGAGCTCTCTTAGCGAAAAGTCAGCTATTTTGCAGCAGCAGTCGGTCA
TTCAAACAAATCAACAATTACAGCAGCAACTTCAATCAATGCACGATAAT
GCTGAAAATAACAGGCAGAAAAGTAGAGAGATACTGACTCGGAGGCCTTC
CTACagAAAAATTCTTGATGACCTGGCAGCAGATTCTCCAGTCAAAATGG
AAAACTATGATGATAATGGAAGTAGTGATGCTTCAAGTCCTGGTGGACCA
GAAGAATTGACAGATAAACAACAACAAGCTCAACAGCAACATCAGCACCA
GCAACAACAGCAACAGGCTCAGCAACAAGCACAACAACAATATCAAAGTA
TTCAACTCAATGGCGTAATTGCTCCCCCATCTTCAGTTGGTGGCACAGTG
GTTCAGCTAAATGATGGCCAGGCTTACACAATAAAAGGTTCTCTTCCTGT
TGGATTGGAAAGTGCAACGCTAGCGTCTCCTCAACAAATGGCAGAAGAAG
CAACTAGGAAAAGAGAACTAAGGTTATACAAAAATAGgGAAGCAGCCAGA
GAATGCAGGCGGaagaaaaaagaatatgtaaaATGTCTAGAAAATAGAGT
TGCAGTACTAGAAAACCAAAATAAAGCTCTAATAGAAGAACTAAAATCTC
TAAAGGACTTATACTGTAGTAAAGGAGATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006705XLOC_006705Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011950-proteinTCONS_00011950-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011950-exon-sc0000134-1491911889:267815..267945TCONS_00011950-exon-sc0000134-1491911889:267815..267945Clytia hemisphaericaexon
TCONS_00011950-exon-sc0000134-1510915933:267815..267945TCONS_00011950-exon-sc0000134-1510915933:267815..267945Clytia hemisphaericaexon
TCONS_00011950-exon-sc0000134-1575043694:267815..267945TCONS_00011950-exon-sc0000134-1575043694:267815..267945Clytia hemisphaericaexon
TCONS_00011950-exon-sc0000134-1491911889:268035..268200TCONS_00011950-exon-sc0000134-1491911889:268035..268200Clytia hemisphaericaexon
TCONS_00011950-exon-sc0000134-1510915933:268035..268200TCONS_00011950-exon-sc0000134-1510915933:268035..268200Clytia hemisphaericaexon
TCONS_00011950-exon-sc0000134-1575043694:268035..268200TCONS_00011950-exon-sc0000134-1575043694:268035..268200Clytia hemisphaericaexon
TCONS_00011950-exon-sc0000134-1491911889:269745..269786TCONS_00011950-exon-sc0000134-1491911889:269745..269786Clytia hemisphaericaexon
TCONS_00011950-exon-sc0000134-1510915933:269745..269786TCONS_00011950-exon-sc0000134-1510915933:269745..269786Clytia hemisphaericaexon
TCONS_00011950-exon-sc0000134-1575043694:269745..269786TCONS_00011950-exon-sc0000134-1575043694:269745..269786Clytia hemisphaericaexon
TCONS_00011950-exon-sc0000134-1491911889:270539..270803TCONS_00011950-exon-sc0000134-1491911889:270539..270803Clytia hemisphaericaexon
TCONS_00011950-exon-sc0000134-1510915933:270539..270803TCONS_00011950-exon-sc0000134-1510915933:270539..270803Clytia hemisphaericaexon
TCONS_00011950-exon-sc0000134-1575043694:270539..270803TCONS_00011950-exon-sc0000134-1575043694:270539..270803Clytia hemisphaericaexon
TCONS_00011950-exon-sc0000134-1491911889:270933..271048TCONS_00011950-exon-sc0000134-1491911889:270933..271048Clytia hemisphaericaexon
TCONS_00011950-exon-sc0000134-1510915933:270933..271048TCONS_00011950-exon-sc0000134-1510915933:270933..271048Clytia hemisphaericaexon
TCONS_00011950-exon-sc0000134-1575043694:270933..271048TCONS_00011950-exon-sc0000134-1575043694:270933..271048Clytia hemisphaericaexon
TCONS_00011950-exon-sc0000134-1491911889:271381..272534TCONS_00011950-exon-sc0000134-1491911889:271381..272534Clytia hemisphaericaexon
TCONS_00011950-exon-sc0000134-1510915933:271381..272534TCONS_00011950-exon-sc0000134-1510915933:271381..272534Clytia hemisphaericaexon
TCONS_00011950-exon-sc0000134-1575043694:271381..272534TCONS_00011950-exon-sc0000134-1575043694:271381..272534Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000134supercontigsc0000134:267815..272534 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	9.33871e-07	1.41612e-07	2.81386e-07	1.64436e-08	0	0	1.54543e-09	0	0	0	0	0	0	0	0	0	0.322578	0	0	0	2.24487e-07	3.95774e-06	0	0.593472	1.27191	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001630Leuzip_CREB
IPR004827bZIP
IPR003102Coactivator_CBP_pKID
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0003700transcription factor activity, sequence-specific DNA binding
GO:0005515protein binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
molecular_function GO:0005515 protein binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
Blast
[Close]
BLAST of TCONS_00011950 vs. Swiss-Prot (Human)
Match: CREB1 (Cyclic AMP-responsive element-binding protein 1 OS=Homo sapiens GN=CREB1 PE=1 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 1.649e-25
Identity = 102/223 (45.74%), Postives = 122/223 (54.71%), Query Frame = 2 
Query:  299 QKSREILTRRPSYRKILDDLAADSP-----------------------VKMENYD-DNGSSDASSPGGPEEL----TDKXXXXXXXXXXXXXXXXXXXXXXXXYQSIQLNGVIAPPSSVGGTVVQLNDG--QAYTIKGS-----LPVGLESATLASPQQMAEEATRKRELRLYXXXXXXXXXXXXXXXYVKCLENRVAVLENQNKALIEELKSLKDLYCSKGD 862
            QK REIL+RRPSYRKIL+DL++D+P                       V    Y   +G   A + GG  +L    TD  Q  Q          Q      Q  Q+     ++ P + V   VVQ   G  Q Y I+ +      P  + +++ A P Q AEEA RKRE+RL KNREAARECRRKKKEYVKCLENRVAVLENQNK LIEELK+LKDLYC K D
Sbjct:  122 QKRREILSRRPSYRKILNDLSSDAPGVPRIEEEKSEEETSAPAITTVTVPTPIYQTSSGQYIAITQGGAIQLANNGTDGVQGLQTLTMTNAAATQPGTTILQYAQTTDGQQILVPSNQV---VVQAASGDVQTYQIRTAPTSTIAPGVVMASSPALPTQPAEEAARKREVRLMKNREAARECRRKKKEYVKCLENRVAVLENQNKTLIEELKALKDLYCHKSD 341
The following BLAST results are available for this feature:
BLAST of TCONS_00011950 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CREB11.649e-2545.74Cyclic AMP-responsive element-binding protein 1 OS... [more]
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