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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011945 ID=TCONS_00011945|Name=TCONS_00011945|organism=Clytia hemisphaerica|type=transcript|length=1919bp
AAACTAAAACGAGGCTAAACAAAAAGAGAATACAGTCTGTtttgtaaatt
taaaatttctggaATAGACATTTGATATTTGAATTTCTTAAATGCAAAAT
TTGTGATTTCCAAAATGTTATTTTGTCgtgaaaacgaggctgaaaatatG
GAAACTAGTTTTAGCATGCTGcCTGCAGTATCGCCACCACCGGAGAAGAA
AGGGATCAAGATGATCCGGACTTGTCAATTGTTCTTGGTTCTCGTCCATA
GAACATTCTTATTTGCAGCTGTTCTCATTGGAGGAACCTACGCCATCAGA
GCTATCGAGAACCACTATCGAGAATCGATTTCTCATATGGAGCTGAAAGA
TGCAGCTGAATATTGCTATACCATTCTAACGACCATAGGTTACGGCCGTG
AGAAAACCATCCCTACATCAGACTGGGGCAAAGTGTTTACCATCGTCTAC
GCAATCATTGGTATCCCAGTCGCCATTTTCACTGTTGGAGCATACGGAGC
ATTCCTGAAGCATTGTGTGTTGAAATTAATCATTGGTTTAGAGCACTGTT
GTTGCTCGTGCTGGCAAGGCAAGAAAATGAATCTCAAAGTGCTCATAATT
TTGATTCTCCTTTTCATTGctgagttcttttgttttggagtCTACGTTTG
CTGGTTGGAAGACCAATGGAattatttagattctgtttacAGTTGGTTTC
TCACCATGACAACCATTGGATTTAAACAACACAACCCGTACCCAGACCAC
TTGGATCTGTTACACGCCTTGGCCTACCTGGTTACCAGTCTTTTTAGCAT
CATAACTCTGGCCGCCATCTTTCAAACCGTTCAACAAATGATTGACGCTG
TCCACAACCAAGATCGCAGCATCTGCGCCATGTTGTTTTGTTGTTATAGC
AACAATAAGAAAGATGCATACCCAATGGATAAATACAATTCGAATCACAG
TATGCGATATGCAGAATACCCTCATGAATAGACAGACCAATAAGCACTTA
CGTTGAGAAAATGTTAACCGAAATATTTATGTATGGTTGGCTGGAGATTT
CTGGAAGtgaataattctaaaaatgggATATTAAACATTTTAGACTTTCA
AGaggaaaaaaacaattattcaAAGTTGACAAACGAGCTGAATTCAGAGT
CAAGATCTTTCtgaaaattattcaacatgaacTAAGCAGATAAACAATGA
TCAATAAatgtaaaacttcaaacaaatattttcataatataTGGACTTGG
TTTGCAATTTGAGTTTGAATTAAAAAGTCAACACCTGAACGTTGCATTCA
AGTAAGAAGCTaaactttcaattaaaaagaTATAATAGAGTATGGTTTTA
GATATGGAAACATATCAATTTCCTAGATTATAATAAATATAACAAAAGTT
AGATAGTCGTTAATTGTAAAGAGTAATCTTAAAAActtccatcagttttt
gaagcgttttgaaaaattgaagacCTTAGTTTTGATCAATAATGCAGTAT
ATATGAAAAAGAGCCAAATTTGAGAAATCTGGTATTATCTgaagttgtga
tttttttgcattggtatttaaatttaaaagatcCCTTGCATTAATCAGTG
ACTTCAAGCTGGGTACAGTTGAATGAACCATAAAGAAATTTGACTTTTAC
TGGACTTTTAAGCCTAAGAGGCACAAAAAGAGTAATTTTGCAGCAAAAGT
AGAACATATTTTGAAATGACAATAAATATCATaacaatttagaatttttt
tatcaaaagatgtattatattataaaagaagaagttattataaaatttta
gaataaccaTTTTTAGGCAGTTAAAACTGCCTTGAAATAGTTGTGTAGCC
TCTTGGTATAACACTTGCTGTacaaagatttttgttttgctttgtcgttt
ttgctttttttaagaatat Run BLAST on NCBI transcript from alignment at sc0000134:232362..237165+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00011945 ID=TCONS_00011945|Name=TCONS_00011945|organism=Clytia hemisphaerica|type=transcript|length=4804bp|location=Sequence derived from alignment at sc0000134:232362..237165+ (Clytia hemisphaerica)
AAACTAAAACGAGGCTAAACAAAAAGAGAATACAGTCTGTtttgtaaatt
taaaatttctggaATAGACATTTGATATTTGAATTTCTTAAATGCAAAAT
TTGTGATTTCCAAAATGTTATTTTGTCgtgaaaacgaggctgaaaatatG
GAAACTAGTTTTAGCATGCTGGTAAGCCAATTCAATTCTATCTATTAAGG
CTCTATGAAAAATTCTCAGGTCCTTGGTTTGACTAGAATTATCATATATA
TTATAAGATAATGTTTCCTAGCTTGTTAGTTACGTTTTTTCTTAACTGTC
TACTACTGTATTATATGATAGTAGCAATTAGTCTTTAGATTTACCAGAAA
TTACGTGAAATTATGACATTCAAAAACAGGGAAGTTGGTTTTCTAATGCT
TTAAAATAGATGTGGAGTACTATGTATTGAGATTGCTCATAAAAGGGAGT
TCCAGACTTTGGTGCTGGCTGAAACTTTACGTCAAGttctttcaaacatt
ttccacatcCGATATGGAGTAGCATGAACTAATAAATTTCTTGTAGACTT
TATCACTGTACTGTATACTGTATGGTCACAAAATAATAGATGAAATGCGT
CAGCCTTCTATTGATAGAAATTTCCATTTCATTATAAAGactagagagaa
aaaaattaaaggacgaaaaagaaaagaaatttgtcatCGCGTCACGCTTT
ACAAAGATCTAATCAACTCAAAATTCATTTCACTGTTAAACTTTGTGGCA
AACTTATTGATAAAATTTATGTTTGAGATAGACCTCGTCTTTATTACTCA
TCATTGCATTGGATTGACTTATAAACTCTTTTAAGTTATTGATTTGGTTG
AAAAACATAGCTTAACATATTATAAAGTTTGGAGCAGAACTTTAACAGCC
TAGGCTagggctacttccaaaggccctgtTTAAAAGGTGGGTGTGCATTA
TAAATCACAGTAACAAGCAATtgtgaaatcaaaaataaaagtaaCATGAG
TATAAATATAATGACTTTACCAGCAGAATGCTATTTGttatgaaatttaa
aatataaaactaGCGTTAATGTATTTAACAGCGCAGTACGAATGCAGCAA
tcgaaaatagatttttttcagacattttGTATAGAAATAACTTTATATTC
GTTCATTTAGTTCACCAAGTCATGTCATGCAGTTTCAGTGACGTTCGGAT
ggtcaaataaaattttttatttggttaatATTTTGTATGGATCTAGGTCA
GAATTGCGAGGTAATTATTTTGGAATGTATTTTACTTACATGGAGTTACC
ATTAACGAGGACTGGGATCTAGTTTACAGCACCGAGCACGACGAAGATGT
CATTGCGCATTCGGCACTATTGAACTTCTGGGGCGTTAGGGTTAATTAGT
GTTTTCAAACATAAGGCTTGTATTTTCAGTTGGaattcaaaaaaggaaaa
ttcaacaCATAAAACTTGAGAGAATTATAGCTTTTGCAATATAACACTAG
CCGACATCCTGGCGTGTTGACAAATTAGGATCTTTGCAGCAGTACAGCTT
TGCATGTTACTAACAAATACAATAGTGATTAGCATCAGAGCTAGGATCTG
ATTAAGAGGGATTATATAAGTTCCTATGTgtacaaaaaagaaattgtatG
CGCGTGTAGAAAATGCTACCAAAAATACcttgaaaagtaaaaaacctttt
taaaaaaaaagtaaaacctGTAAAAGGTCAAAGGTCATTTTAATGCAGCT
GAATGTAGAGTCATTAATAGCTTCGTTTGAATACTTCTGCTTGTAATGAT
TCGGTTTAAAACTGTCTTTTTTAAGTACAGAAGTTCTTAGTACAGTAGTC
GGAGACAGTAGCTAGTTGAGTGTATTATCGTGTCTTTTAGTGATCAGGTA
CCgtttaaatcattaaaaagcaTATCTTGAGAAAATAGTTGATTTGATGT
TACTGACGAATTCAAAATCTCTACTTCTGCAACAGTAACAGACGGACAAT
AACACAACATTTGAAATATGTGACAACAGCAATTTCTATCATCTCAAAGT
TTCAGTAAAATGTATGTAACATCATGTGGCAAGACAGTTGTTATAGAAAC
AAACTCAATTATCACTTTTCCCTAAAGGGAGTGGTAATATAAAACGGAGA
TCGGCGTTTTGATATAAAAATGGTGTTGAACAAAGTGTCAGATTTAATAT
CAATTTGTCAACTCTTACACCAAACAAAACTTGactcaaaacgtatatat
acaaaaaaattgtttgaaagttGTTAACAACAAAAAACTGTCAAATAATA
TGGAAGAcattaagatttttaaaaagttttgtggTTTTTTAAAGAGATCA
ATTCGCTGTGAATGAAAAGATNTTCTAAAAACTTTTGTGGTTTTTTAAAG
AGATCAATTCGCTGTGAATGAAAAGATAAAGGATGACACACTATgaatga
atttcaaaaaaaatacatttgagTGAATTTGGagagattttcgaataaaa
aactAATCTTGAAGAAAAGGAATAAATCTCCAGTGTCCGGCAAAGTTCTG
AAAACAGTACTGGAGCTTTCAAAGCAACAAGGCATCTTAGACTTTTATAG
AAGACCACTCTACTCATGTTTGCTGGAGTTTTGACTTGTTTAAGCGGTTG
CTAAAAAGTCACTAAAGACAAGTATAGACTTAGAGAAACGAAAACTTACA
GGCTatgtttgtttctttttttagcCTGCAGTATCGCCACCACCGGAGAA
GAAAGGGATCAAGATGATCCGGACTTGTCAATTGTTCTTGGTTCTCGTCC
ATAGAACATTCTTATTTGCAGCTGTTCTCATTGGAGGAACCTACGCCATC
AGAGCTATCGAGAACCACTATCGAGAATCGATTTCTCATATGGAGCTGAA
AGATGCAGCTGAATATTGCTATACCATTCTAACGACCATAGGTAAGTctt
aatttaaaatttgaatgttAAAGAATGTTAATCATGACAATAGAGCGGTC
GCTTTAATTAAGTTGGAGACTAAAAGAAGTTACTGAAACAACATAAGAAT
TTTGCAAGGAAGACAGTATTcacaacaaaaaaatttgaccATTTCATATC
AACACCAAGGTAACTCACAACTTGACATCACTTCACTTGCTAAACTTGAA
CTTCCAATGCCGTGATAGCAATTATCTAGGATAAAAATTCTCGGCTACCA
ATgatctcaaaggtaacgaatcaaATTTACACAATTACTTAATAATCATC
ATTCACTTGTTCAATTATTTCAGGTTACGGCCGTGAGAAAACCATCCCTA
CATCAGACTGGGGCAAAGTGTTTACCATCGTCTACGCAATCATTGGTATC
CCAGTCGCCATTTTCACTGTTGGAGCATACGGAGCATTCCTGAAGCATTG
TGTGTTGAAATTAATCATTGGTTTAGAGCACTGTTGTTGCTCGTGCTGGC
AAGGCAAGAAAATGAATCTCAAAGTGCTCATAATTTTGATTCTCCTTTTC
ATTGctgagttcttttgttttggagtCTACGTTTGCTGGTTGGAAGACCA
ATGGAattatttagattctgtttacAGTTGGTTTCTCACCATGACAACCA
TTGGATTTAAACAACACAACCCGTACCCAGACCACTTGGATCTGTTACAC
GCCTTGGCCTACCTGGTTACCAGTCTTTTTAGCATCATAACTCTGGCCGC
CATCTTTCAAACCGTTCAACAAATGATTGACGCTGTCCACAACCAAGATC
GCAGCATCTGCGCCATGTTGTTTTGTTGTTATAGCAACAATAAGAAAGAT
GCATACCCAATGGATAAATACAATTCGAATCACAGTATGCGATATGCAGA
ATACCCTCATGAATAGACAGACCAATAAGCACTTACGTTGAGAAAATGTT
AACCGAAATATTTATGTATGGTTGGCTGGAGATTTCTGGAAGtgaataat
tctaaaaatgggATATTAAACATTTTAGACTTTCAAGaggaaaaaaacaa
ttattcaAAGTTGACAAACGAGCTGAATTCAGAGTCAAGATCTTTCtgaa
aattattcaacatgaacTAAGCAGATAAACAATGATCAATAAatgtaaaa
cttcaaacaaatattttcataatataTGGACTTGGTTTGCAATTTGAGTT
TGAATTAAAAAGTCAACACCTGAACGTTGCATTCAAGTAAGAAGCTaaac
tttcaattaaaaagaTATAATAGAGTATGGTTTTAGATATGGAAACATAT
CAATTTCCTAGATTATAATAAATATAACAAAAGTTAGATAGTCGTTAATT
GTAAAGAGTAATCTTAAAAActtccatcagtttttgaagcgttttgaaaa
attgaagacCTTAGTTTTGATCAATAATGCAGTATATATGAAAAAGAGCC
AAATTTGAGAAATCTGGTATTATCTgaagttgtgatttttttgcattggt
atttaaatttaaaagatcCCTTGCATTAATCAGTGACTTCAAGCTGGGTA
CAGTTGAATGAACCATAAAGAAATTTGACTTTTACTGGACTTTTAAGCCT
AAGAGGCACAAAAAGAGTAATTTTGCAGCAAAAGTAGAACATATTTTGAA
ATGACAATAAATATCATaacaatttagaatttttttatcaaaagatgtat
tatattataaaagaagaagttattataaaattttagaataaccaTTTTTA
GGCAGTTAAAACTGCCTTGAAATAGTTGTGTAGCCTCTTGGTATAACACT
TGCTGTacaaagatttttgttttgctttgtcgtttttgctttttttaaga
atat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00011945-exon-sc0000134-1491911889:232362..232532 | TCONS_00011945-exon-sc0000134-1491911889:232362..232532 | Clytia hemisphaerica | exon |
| TCONS_00011945-exon-sc0000134-1510915933:232362..232532 | TCONS_00011945-exon-sc0000134-1510915933:232362..232532 | Clytia hemisphaerica | exon |
| TCONS_00011945-exon-sc0000134-1575043694:232362..232532 | TCONS_00011945-exon-sc0000134-1575043694:232362..232532 | Clytia hemisphaerica | exon |
| TCONS_00011945-exon-sc0000134-1491911889:235086..235302 | TCONS_00011945-exon-sc0000134-1491911889:235086..235302 | Clytia hemisphaerica | exon |
| TCONS_00011945-exon-sc0000134-1510915933:235086..235302 | TCONS_00011945-exon-sc0000134-1510915933:235086..235302 | Clytia hemisphaerica | exon |
| TCONS_00011945-exon-sc0000134-1575043694:235086..235302 | TCONS_00011945-exon-sc0000134-1575043694:235086..235302 | Clytia hemisphaerica | exon |
| TCONS_00011945-exon-sc0000134-1491911889:235635..237165 | TCONS_00011945-exon-sc0000134-1491911889:235635..237165 | Clytia hemisphaerica | exon |
| TCONS_00011945-exon-sc0000134-1510915933:235635..237165 | TCONS_00011945-exon-sc0000134-1510915933:235635..237165 | Clytia hemisphaerica | exon |
| TCONS_00011945-exon-sc0000134-1575043694:235635..237165 | TCONS_00011945-exon-sc0000134-1575043694:235635..237165 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000134 | supercontig | sc0000134:232362..237165 + |
Blast
The following BLAST results are available for this feature:
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