|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011930 ID=TCONS_00011930|Name=TCONS_00011930|organism=Clytia hemisphaerica|type=transcript|length=2452bpRun BLAST on NCBI transcript from alignment at sc0000134:70604..129770+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00011930 ID=TCONS_00011930|Name=TCONS_00011930|organism=Clytia hemisphaerica|type=transcript|length=59167bp|location=Sequence derived from alignment at sc0000134:70604..129770+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00011930 vs. Swiss-Prot (Human)
Match: D19L1 (Probable C-mannosyltransferase DPY19L1 OS=Homo sapiens GN=DPY19L1 PE=2 SV=1) HSP 1 Score: 291.197 bits (744), Expect = 2.782e-86 Identity = 149/370 (40.27%), Postives = 235/370 (63.51%), Query Frame = 3
Query: 3 SFFMAAMIAILIVVKLESTIEKLP-NRVLIWLVQGISFIVLSVAIKIAIAIVFQIKDDAHIFDILKSKFTDYKDFHTQLYVCAPEFDFIGWEYFEKLSKTFLIPSAGFVTLTVVIRVLINEWKYWIVGE-NIQEDDDDQTSPTKPFARALYLVLQAACFLVMAVMLMRLKLFSTPALCILSSLLASREVYSFIPKRIQQYAAVFIILGVMSVQGYPNLKEQFNMKGEYNNPELEQLIEWLREHSNPNDVFAGAMPTMAAIKLSVKRPIVNHPHYEDSGLRARTKRVYQMYSRKPCEFVHDEIKAMGVTYYVFEDSWCFRSFRDGCALPEVWDIEDPKNKGR-PSCCSLIRQNPGRFKIIFSNKTYVVLKV 1103
S++ ++++ I ++ ++ K+ + + +W++QG ++ +V +K + +F I DDAHI ++L SKF YKDF T LY CA EFDF+ E + +KT L+P V + +V +++ + W + ++++ D +Y LQ + + +++MRLKLF TP +C+++SL+ SR+++ ++ ++ A VF IL MS+QG NL+ Q+N+ GE++N E+LIEW++ + P+ VFAGAMPTMA++KLS RPIVNHPHYED+GLRARTK VY MYSRK E V E+ + V YY+ E+SWC R + GC++PE+WD+EDP N G+ P C L++ + F +F N Y VL+V
Sbjct: 310 SYYASSLVIIWGILAMKPHFLKINVSELSLWVIQGCFWLFGTVILKYLTSKIFGIADDAHIGNLLTSKFFSYKDFDTLLYTCAAEFDFMEKETPLRYTKTLLLPVVLVVFVAIVRKIISDMWGVLAKQQTHVRKHQFDH-------GELVYHALQLLAYTALGILIMRLKLFLTPHMCVMASLICSRQLFGWLFCKVHPGAIVFAILAAMSIQGSANLQTQWNIVGEFSNLPQEELIEWIKYSTKPDAVFAGAMPTMASVKLSALRPIVNHPHYEDAGLRARTKIVYSMYSRKAAEEVKRELIKLKVNYYILEESWCVRRSKPGCSMPEIWDVEDPANAGKTPLCNLLVKDSKPHFTTVFQNSVYKVLEV 672 The following BLAST results are available for this feature:
BLAST of TCONS_00011930 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.