TCONS_00011913 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00011913
Unique Name	TCONS_00011913
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1329

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000134:30184..38290+

transcript sequence

>TCONS_00011913 ID=TCONS_00011913|Name=TCONS_00011913|organism=Clytia hemisphaerica|type=transcript|length=1329bp
tagaaaaaaataaaaaataaaaatggtaagAGGAGAAGATTTACCCATTG
ATATATACTACAACAAATTACTAGATTGGCTCATTGATAGAAGACACTGT
GAAAAGAATTGGCAAGATAATGCAGGAAATATTCGCGAGAAGATAAATAC
TGCAATACAAGATATGCCACCTAATCAAGAAATCACAGACTTACTATCTG
GAACATATATCAATTATTTCCATTGTAACAAAATCGTCAGTCTTTTAAAA
CAATGTGGCGAAGGTAGCACAAATTTCTTTGGTCAATATTCATCTAAAAG
AATGAagGATTGGCAAGAAATTATCAATAACTATAAAGATGAAAGTGTTT
TCTTAGCGGAAGCAGCTCAAATGATAATGAGAAATGTTAATTATGAAATA
CCTGGACTCAAAAGACAAATAGCTAAATGCCATCTCACCCAGCGTGAAtg
tcaaagaaaagaaaaagattgcAATCAAAATTCTGcacttttcaaagcca
aatatttgaaattatGTAAACAAATGGGTATACCTGGTTCGAATGTACGA
AAAGAACTGGTTGAACTTGCACAAGAATTACCAGGAATTCTTAAAGATGT
GTCCGAAGAAACAAAATCTATGGAGGATGCCTGCCAATACTATAGTGCTT
TCATCAAATTCGTAAATCAAAAAGATACCATAGAGGAAGTAGACATAACA
CCTCTCATCAAATTTGTCATTGAACACGGTAATGCAACAGTATATCAATG
GAAAACTGGTAATGTTCCATCCAAAATTGAAGAAAGTATCCAGAAAGTTG
ATATGGAAGCCATGGCACAGATTTCAGTGGACGGTGCTGGAGATGAAGAA
GCTGAGATCGATTGGGGAGATTTGGGAGGAGACACGTCAACAACAGATGG
AGGAATAGATTTTGGTGATGAAGGAGATTTGAATGCAGATGGCGGCGGTG
ATATCGATTGGGGTAATATGGGAGACGGAGTGGAAGACATAGCAATCACA
GTTGAAGATGCTGGTCAAGAAAACCCTGAAGGAGGAGTGGCATCAGGAGA
TGAAGCACTCTCCGTCTTAGAGAACACAACAACGAGAAATGTCTTCATTG
ATGAACTACTGGAGGTTAGCACGTTTCTtttattattcttttttttttta
cataagtgttcccgtttcatatcagacacatatttaatatcaggacagtg
tctgcctattgttatattatgctgatataagcaaaagaatgttttttctc
ttcctctttctgaccaatcttgctccacatccgtgtcaatccaatgcgaa
aaagcttgtaaattaaaattgatgaatat

Run BLAST on NCBI

transcript from alignment at sc0000134:30184..38290+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00011913 ID=TCONS_00011913|Name=TCONS_00011913|organism=Clytia hemisphaerica|type=transcript|length=8107bp|location=Sequence derived from alignment at sc0000134:30184..38290+ (Clytia hemisphaerica)
tagaaaaaaataaaaaataaaaatggtaagAGGAGAAGATTTACCCATTG
ATATATACTACAACAAATTACTAGGTATGTTGCTTTTTGCTAACTTTATC
ACATGTTGTTAGTTGGACACATTTGAAAGTCTGGTGATCTGAATATTTTG
AAGATTACAGTAGGATGATCTTTTAATGATTTGTTTATCAATAAGTTTGA
ACACTTTGCCCTATTTATTTGAAGGTGTTGGTAAAATCTAAATACAGTGA
AACCTTTCAGGGacattgaatgaaaatttcatGCTAATTTTTCTATAGAT
TGGCTCATTGATAGAAGACACTGTGAAAAGAATTGGCAAGATAATGCAGG
AAATATTCGCGAGAAGATAAATACTGCAATACAAGATATGCCACCTAATC
AAGAAATCACAGACTTACTATCTGGAACATGTTTgtattatttcaatttt
ttctaaagACAAACTAGGGCCGTTCTATTTCCGTATTAAAGGAATTTCTT
TGAGAAACaagatttttatataaaaattaagtttatgGCAGGTTTTATTA
TGAATACTTATGAATACTCCATTACGTATTTCTTGttagggtggggcgtc
aaatgtcaaagtcagaaaattcaagatgtagtgtttttttatgaaaattt
aacctattgtgaggcattctgcgcaatttttaaggtcaaaagttcaaaat
tggccgaacccccctgggggtactgatttgCACTACatgcaaaaattgga
aaaatggcattttctggccttttcaggcctgtaaatatgtcaaaactatt
tcaaatcttatttttttcacttgttgtactaaattttatgaagaaacaac
aaaagaatcatattggattgaaaattgtgcccattgaagccctaaacgag
ccgttttaagccaattttggatagcaaaatgctttttaaggccaattttg
caagctcaTAAACTTTNGCCCATTGGAACCCTAaacgagctgttttaagc
caattttgggtagcaaaatgctttttaaggccaattttgcaagtacataa
actttaaactgattgattcacatatctgaaattttcagagatggaagtct
ccaataaagtctttaagcaaaatgaatttcaagtttttcacttttttcaa
gaaatcataatggcgtcttcaaaaatcgctttttagcaaaaaaaaatcat
atttctcaaaaatagcattttttaaggcaagcttctacaaactgagttta
aatgctgactgaaatttttttgtagtgattatactggagatactccaggg
aaatcaaaatcatttgcgtCTGGGAtgggtctatgtccgccattatggaa
ataaaatccctgctaagagccatttttcaggcaaaaacccaaatttggac
tgaaaaaatctctgaaATGTCTATAGACATGGgtccaaatttttttgcag
tgGTAGTATTttggaaatactgcaggaaaatcaaagtcatctgggcttgg
gatttgggtatatccaccattttgaaattgaaattcctgctaaaacgcaa
tatttcaatcaaaaatccaaattttgactcgaaaaatcttaaaaatggca
atagacatgaagctaaaatctttttgcagtgatactCTTCTGGAAgtact
ccaggaaaatcaaaatcatttgggtttaggatttgggtatatccgccatt
atggaatattgaaatctgtgctaaaactggctaaattgcaacatttcaag
caaaaatctcatattgacttaaaaactgctctaatatggcaatagacatg
aacctaaaatctttttgcagtgatagtgttCTGTAAATACTCTAGGGGTA
AAAACTATTCAGGTATAAGATGCTTGTGGGACCGCAATGTTTAAACTGaa
gccagttttaaaatgtatataatatttcaagctaaaattcaatctttttt
tgacggaccaagtcttgaaaatggaaatgtaagtgggctataaagaattg
ttgagtgaaatgggattttttaaataatttatttcaactagtatttctaa
attaaTTTAAAGGATTGTAAATTCACATTCTTTGCTTAATATAATACaca
aaatatttagtcaattATGATGTATCGGATGGAAATNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNaaaaatggctcttagcaggaattttatttccataatggcgga
catagacacatcccagacccaaatgattttgatttccctggagtatctcc
agtataatcactgcaaaaaaaatttcagtcagcatttaaactcagtttgt
agaagcttgccttaaaaaatgctattttttgagaaatatggctttttttt
gctaaaaagcgatttttgaagacgccattatgattttttgaaaaaagaaa
aaaacttgaaattcattttgcttaaagactttattgaagacttccatctc
tgaaaatttcagacatgtgaatcaatcagtttaaagtttacgagcttgca
aaattggccttataaagcattttgctacccaaaattggcttaaaacggct
cgtttagggctccaatgggcacaattttcaatccaatatgataattttgt
tgtttcttcataaaatttagtacagcaagtgaaaaaaataagatttgcaa
tagttttgacatatttacaggcctgaaataAAGGcaagaaaatgccattt
tttccaatttttgcctgtagtgcgaatcagtacccccaggggggttcggc
caattttgaacttttgaccttaaaaattacgcagaatgcctcacaatggg
ttaaattttcataaaaaaacactacatcttgaattttctgactttgcccc
aaaaatgactgttgacgccctaccctatTCTTGTTTTCCTTGGAAGTGAA
ATTAAAACAAATgcctttttgaaacttttttagaAGGATTTAACTTGGAA
ACGGCTagcaaaaaaacatttataaTCAGAGATGTCCACCTTTTAGAGTG
TTCGCTAATTGGTGGTTCTTCTGTATTTCAATTTTAGATATCAATTATTT
CCATTGTAACAAAATCGTCAGTCTTTTAAAACAATGTGGCGAAGGTAGCA
CAAATTTCTTTGGTCAATATTCATCTAAAAGAATGAaggtaaattttatt
tcattcctATGTGGTACAATTTCACAAAGGAACGCATACATCTTAAAAGA
TCTCATTtgcgaaataccgaataattttgccaaaatttctgaaataccGT
AAAGaaatacttgcaatttcgaTACCgtattttttgggtatttttccttg
ttttgactaatttttcatcagtttaatttttcatgtatgaattccgaaaa
aggggggaTAAAAACCATCATTATACTGGAATTTAGAAgccaaaatttat
gaatttcCGATACCAAAACATTTTCAGAATTCCAAAATACTGAAGGAATT
TAGCccaatttccaaaatttggaaaaaaaaagggtcgatttccgcacttc
cgaaataccgtacgccccccactccTATAGTATGTGgtgcaaaaaaatgc
cacaaatttgaacaagatttaTATTTTGTCTGACTTTCAATCTCATCCTC
CGttgcattaatttttctaaTGTATTAGTTAGAAATTTCTTACAATATCA
ACAGAAAAGCATCAACTTTCACAATTTTCTAATCATTTTGAAAGGACTTA
TATGGTTGAAAGTAAAACAAGTTTCAGTCAAAATTACTATAGTGCATGTG
GCAGAACAGAAGAGAACTTTTTTGGTTACGCTTCTACAATAATTTCATCT
TACAGGATTGGCAAGAAATTATCAATAACTATAAAGATGAAAGTGTTTTC
TTAGGTAAGGGAAGTGATTTATGACACCATTATTTGATCTAACTCCTAGA
TAGAAATAAAATTGCTTGAATAATTTGTCCACCAATTTTAAGATTGTCTA
TTTATCAGCTTATATCTTATATGAGAAGTGTATAGAGAAACACAATTTTC
GGTCGTAACGTActatatttttagattttaaacagcaaaaaaaatttatt
gctttAAAATTATTCTTTCTTTCTAGCGGAAGCAGCTCAAATGATAATGA
GAAATGTTAATTATGAAATACCTGGACTCAAAAGACAAATAGCTAAATGC
CATCTCACCCAGCGTGTAAGTTTATTACTTCAATGGAGCCTAATACTTTT
GTTTAGCTTTCATTTATTATACACTCTAATGTTGATTCTTTGTAAGGAGT
AACGGGACTTTTAGgttttctaaaatttcatttcaataggaCATGGAATT
GCCAGTAGTGAAACAATAACTTAACTGCTTCCCATAATCGTTCTGTTTAT
ACACTTTACAAATTATTCAATTATGTTTTCCATAGCAAAAATTATAACAT
ACATCATTATATTTTCAATCTTGGTTTTATTCTTCATCTAGGAAtgtcaa
agaaaagaaaaagattgcAATCAAAATTCTGcacttttcaaagccaaata
tttgaaattatGTAAACAAATGGGTATACCTGTAAGAAATTTTTGCATGT
GACTTTAATCTCCCAAGATTTTTTCCGgtgttagattttcatttttgaga
CTTAAAATGTGTAggggggccgtccacatagtacgtatgcactaaaatgt
tgaaaattgagtTCCCCTCCCcctctgtacgcaagcgtacgcaaatggct
acaCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNactccccccccccccc
cccttctcggttgaagaaaatttcgataATTCAAATTGTTTGGctcggac
ctttatttcatacatgaaactcaatgtttattaattaagaatctttttct
tttccttgatgtctataagaagcgtaaaagtcgacatTCCTCATCATCAA
CGTCGATATCGTAAGGAACAAACGAATTTCTTTTAATtctctttcaaaag
attttacaagcagaaaaaatgaatgtgaaaagGAATATAAATGTAAAGGA
ATAGGAATATAAATCCACTCCCCTTGTACGCAAGTATACGCTTTTAAGAA
GACCCCTCTTCCCCTATAGTGGGTACGTACTATGTGAACGGCTCCTAGTG
TAACTCACTGTGCTTTGAAAATCTTATACCAGAGTTTCCGAAATACTTTA
ATCATCTGGCGCAAAATTCTATAAATCTTTGTGGAGGATAACCATACTTT
GCCCTGAATTCTAGGGTTCGAATGTACGAAAAGAACTGGTTGAACTTGCA
CAAGAATTACCAGGAATTCTTAAAGATGTGTCCGAAGAAACAAAATCTAT
GGAGGATGCCTGCCAATACTATAGTGCTTTCATCAAATTCGTAAATCAAA
AGTATATTGTTATTGAGATATAATAGAAACTAACCAACCCTTGTGTCGAA
AATTGtataaaataataatgaaaTGAGCTTTCAAGGGTCTAGTTACAATA
AATACCTGAAATCAATGTATTGGGTTTTGATGATACAGACTTTTGACGTC
ATTCTACCATAGTTTGTACCTGATCCTCTGATAGCAACAGAATGTTGATG
TTCATTTAGTAAGTTCGTTAAAAGATATGCAACCCTAAAACTCttcttat
tgaatttttttgcagAGATACCATAGAGGAAGTAGACATAACACCTCTCA
TCAAATTTGTCATTGAACACGGTAATGCAACAGTATATCAATGGAAAACT
GGTAATGTTCCATCCAAAATTGAAGAAAGTATCCAGAAAGTTGATATGGA
AGCCATGGCACAGATTTCAGTGGACGGTGCTGGAGATGAAGAAGCTGAGG
TATTTGACCATATCCATAGTGTGATTGGCACTAATACAAATTGGTGTGTT
TAAACTTAACATACGCTGTCGGgaagatttttgttttcatttttcaacat
CTCAAAACTTAAACACTTAAAATTTTTCTCCTCAAAAGTTCAACGGTTTG
ATAACTTTTCGATATAATATAGTGCTGAGAAAATGTTAATTTAATACACC
TAATCAACCCGAGGGAACTGGTgatgaatttacaaggaaaatctttttga
cCAAGGTATTATAATATACAAGCGTAGGAGCTCTTGCGAAAAATGTAAGA
TGCCTTTGCATTCATTGGAATGATAAAGCAGTTTCAATTCAGTTATGCTG
TTCGAATACTGAAAATAGTTTGCACTCAACAGTAGAGCAGCATGAAAATG
CCGTCCGCTGGGgagaaaactttcttttaaaatcatttacCAGTCCCCTC
AAATGCAAACTACATCGTTAAGGATTTATAAGTGTACAATATTCTACTTT
GACACCAATAGATCGATTGGGGAGATTTGGGAGGAGACACGTCAACAACA
GATGGAGGAATAGATTTTGGTGATGAAGGAGATTTGAATGCAGATGGCGG
CGGTGATATCGATTGGGGTAATATGGGAGACGGTAAGACCCTGATTCGTG
GAATGTATTTACAACGTTTTCTGTTATAGGGGTAGCTTTAAGAGTTTTAC
CTAAGAGACTTTTTTATGTTAGCGAGTTTTTATTGCTAAAAACCAGACTT
CACGTTTCAGGAAGGctaaaagacaatgacaacagaccctctacggcaat
gaattttgaaataagtcgcagatactgggtttgtgtacaACCTAAGTGGG
CTAGGAAATACTGATAATGATGCAATTCAATGCgtaatgcattttcgcta
aacgctatattctCTGCCTGATTGttgtcatttttggacctacctccggg
taccccggtggaggttctataaattaacccatgtccgtccgttcgtccgt
tcgtccgtccgtctgttaccagcttttCTCAggattggctcattagtttt
ttctgattttttgcacaatgatgcaaaatggcaatgcccagaacgtgacg
gagcccgatttttgagaaaaaatttatttgagcacatttgggccaaaaac
tacctaaaaattgggttttttggactttgtgcaaaatcctgtcattactt
ttttctgattttttgtactaAGATGGaaggcaagattctctaaagaatgg
ctgaagtggtttttcctggaaaattcttattcgccttaaaagacggattt
tcgtattttggggaaattccctttaaccaaataagaaaatatagcttttc
tcaatgttgactcataatttctttctgattttttgcacaatgatgcaaaa
tggcaatgcccaaaatgtgatggagccagATTTCtaaggaatattttttt
tggccaaatttgggccaaaaacatcttaaaaggttttttgggcctgaatg
gtttaagtgattttcgtatttggggaaattcctttttaccattttacatt
attcaacacacaagctttatttttccattctgaatttttgtacaattatt
gtcacttttttcgtattttcatctgatgttaatcattaggtaggtccatt
cagcatgttgcttgttctccttattgctatctaacttccatcatcaggta
ggtccatttaaTATCTAGCTTGTTTcttttatgatttctttttgtGCTCT
CTCAGGAGTGGAAGACATAGCAATCACAGTTGAAGATGCTGGTCAAGAAA
ACCCTGAAGGAGGAGTGGCATCAGGAGATGAAGCACTCTCCGTCTTAGAG
AACACAACAACGAGAAATGTCTTCATTGATGAACTACTGGAGGTTAGCAC
GTTTCTtttattattctttttttttttacataagtgttcccgtttcatat
cagacacatatttaatatcaggacagtgtctgcctattgttatattatgc
tgatataagcaaaagaatgttttttctcttcctctttctgaccaatcttg
ctccacatccgtgtcaatccaatgcgaaaaagcttgtaaattaaaattga
tgaatat

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_006698	XLOC_006698	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000134	supercontig	sc0000134:30184..38290 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
36.9252	36.2848	23.557	19.3687	2.23156	1.75305	1.21207	2.48211	27.9839	27.8538	22.9381	22.2956	13.7895	11.2056	18.2084	15.5729	21.8434	23.3576	7.33617	9.28571	26.2443	25.8222	30.9466	26.3948	1.83984	1.42535	20.88	15.339	23.4809	24.34

Blast

[Close]

BLAST of TCONS_00011913 vs. Swiss-Prot (Human)
Match: CK5P3 (CDK5 regulatory subunit-associated protein 3 OS=Homo sapiens GN=CDK5RAP3 PE=1 SV=2)

HSP 1 Score: 289.271 bits (739), Expect = 2.240e-91
Identity = 158/377 (41.91%), Postives = 228/377 (60.48%), Query Frame = 2

Query:   35 EDLPIDIYYNKLLDWLIDRRHCEKNWQDNAGNIREKINTAIQDMPPNQEITDLLSGTYINYFHCNKIVSLLKQCGEGSTNFFGQYSSKRMKDWQEIINNYKDESVFLAEAAQMIMRNVNYEIPGLKRQIAKCHLTQRECQRKEKDCNQNSALFKAKYLKLCKQMGIPGSNVRKELVELAQELPGILKDV-SEETKSMEDACQYYSAFIKFVNQKDTIEEVDITPLIKFVIEHGNATVYQWKTGNVPSKIEESIQKVDMEAMAQISVDGAGDEEAEIXXXXXXXXXXXXXXXXXXXXEGDLNADGGGDIDWGNMGDG---------------VEDIAITVEDAGQENPEGGVASGDEALSVLENTTTRNVFIDELLEV 1117
            + +PIDI  +KLLDWL+DRRHC   WQ     IREKIN AIQDMP ++EI  LLSG+YI+YFHC +I+ LLK     + N FG+YSS+RMKDWQEII  Y+ ++ +L E + +++RNVNYEIP LK+QIAKC   Q+E  RKE++C   +A  + ++   CKQ GI G NVR EL+ L ++LP  L ++ +   +S+ +A   Y A + FV +  T +   + P+++FV + GN+TVY+W+TG  PS +E    +   E +A+ ++D  GD   E                +  G +  ++A+  G IDWG   +                   + ITV +AG + PE GVA G +AL++LE T TRN F+DEL+E+
Sbjct:    5 QHVPIDIQTSKLLDWLVDRRHCSLKWQSLVLTIREKINAAIQDMPESEEIAQLLSGSYIHYFHCLRILDLLKGTEASTKNIFGRYSSQRMKDWQEIIALYEKDNTYLVELSSLLVRNVNYEIPSLKKQIAKCQQLQQEYSRKEEECQAGAAEMREQFYHSCKQYGITGENVRGELLALVKDLPSQLAEIGAAAQQSLGEAIDVYQASVGFVCESPTEQ---VLPMLRFVQKRGNSTVYEWRTGTEPSVVERPHLEELPEQVAEDAIDW-GDFGVE---------------AVSEGTDSGISAEAAG-IDWGIFPESDSKDPGGDGIDWGDDAVALQITVLEAGTQAPE-GVARGPDALTLLEYTETRNQFLDELMEL 360

The following BLAST results are available for this feature:

BLAST of TCONS_00011913 vs. Swiss-Prot (Human)

BLAST of TCONS_00011913 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
CK5P3	2.240e-91	41.91	CDK5 regulatory subunit-associated protein 3 OS=Ho...	[more]

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TCONS_00011913 (transcript) - C. hemisphaerica