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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011911 ID=TCONS_00011911|Name=TCONS_00011911|organism=Clytia hemisphaerica|type=transcript|length=1337bp AAGTATTCCATATATATCTATGGTACTTTTATCAGTTATCATATCGGATT CTAAAGATAAACTTATGAGTCTAGTAGGCTATTCGTTTTAGTATCAATCA AACTGATTTGTTATTCAAGTATAGAAGTTACTTCAAGATGGGGATGCGAG AAAATTGGCACCGCTATATTGACATAACTAAATCAAAGTGTAAAGGCCAT GAGAAGGCTGCACAGTACTGGGATTTCATGCATTCTTTTTTGAGTTTGCT TGTGATTTTTCTTGGAGCGACCACAACTTTTCTTTCATTGATCGACTCTG TTCCTTCACCGGTTGTATCAGGTATTGCGGCCCTGACCACTCTTTCATCG GCTGTTGCTGCGTTTTTGAGGCCCCATGACCGACGCCTAGCACAGGTCGA ATCAGCCAAAGAGTTTCGAATCCTGATGATGAGGATGGTGCGTTGTGAGC ATGAATCTGAATATGAAGATCTCTGGCGAGAACTGAACAAAGCATTGATG GATGAGCCTTTCCTACCAAAGAAGTATATCGCCAATGCTATGGAGATGAA CTGGTCGATAACACCAGAGCTGTTAATGATCATTGTTGAGAAAGAGAATG AACTTGTGGAAGCTATTGGTGATGAAGCAACGAAATTGATGGAGGAAGAA AGACAAACGAGAGAAGATGAGAAAATTCAGTTCGCCGAAGCTGAGAATCG CCACCAGAATGGGAATGTAATGATTGATGCAGCAGCTGATGCAGTTACTT CCATTTTCAGTCAATTTAAAGATAAAAGAGTTGATTTGAATTCTTCAGtc aacttttttgggaaattaaTCCCTCATGACACCTTTGGTGCTGTCACCAA TGGCGATAAACAAGAATCAGGTTTTGAAATGAAGGAGAATAAGGTCTTGG TGGTCAACCCAGATGATTGCTCACATAATGATGATGCCAATATCAATGAT GACATTTCAGATGGATCAGAGAGTAACGACATCGGCAATGAAAACGACAA ACTACTTCCTGAGAATTCAGAAAATAATGAAGTAGTTCTGAAAAACGATG AATGTGAGAATCGCAGTTCAGGTTCAGCTTCCTCTTTCCCTCGTGATGAA ATGTCGACTgatgaaaaagtaaaacttaTACCCCAAGAGTAATTTGTGTG TTAATTTGTTTAATAACACGCCCATTATGTGGATCTCACTAAATCTAGTG ACTATATTTGTAAGCTTAGCCAAATGTAAAATAAATCTACTTTGATTAGC TAAATCTAGTGACTATATTTTAAAGCTCTTATGCAGGTATGAAATAAATG TATTCTGATAAAATTAAGATACAAACAAATATACGCA Run BLAST on NCBI protein sequence of TCONS_00011911-protein >TCONS_00011911-protein ID=TCONS_00011911-protein|Name=TCONS_00011911-protein|organism=Clytia hemisphaerica|type=polypeptide|length=334bp
MGMRENWHRYIDITKSKCKGHEKAAQYWDFMHSFLSLLVIFLGATTTFLS LIDSVPSPVVSGIAALTTLSSAVAAFLRPHDRRLAQVESAKEFRILMMRM VRCEHESEYEDLWRELNKALMDEPFLPKKYIANAMEMNWSITPELLMIIV EKENELVEAIGDEATKLMEEERQTREDEKIQFAEAENRHQNGNVMIDAAA DAVTSIFSQFKDKRVDLNSSVNFFGKLIPHDTFGAVTNGDKQESGFEMKE NKVLVVNPDDCSHNDDANINDDISDGSESNDIGNENDKLLPENSENNEVV LKNDECENRSSGSASSFPRDEMSTDEKVKLIPQE Run BLAST on NCBI transcript from alignment at sc0000134:15659..25199+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00011911 ID=TCONS_00011911|Name=TCONS_00011911|organism=Clytia hemisphaerica|type=transcript|length=9541bp|location=Sequence derived from alignment at sc0000134:15659..25199+ (Clytia hemisphaerica) AAGTATTCCATATATATCTATGGTACTTTTATCAGTTATCATATCGGATT
CTAAAGATAAACTTATGAGTCTAGTAGGCTATTCGTTTTAGTATCAATCA
AACTGATTTGTTATTCAAGTATAGAAGTTACTTCAAGATGGGGATGCGAG
AAAATTGGCACCGCTATATTGACATAACTAAATCAAAGTGTAAAGGCCAT
GAGAAGGCTGCACAGTACTGGGATTTCATGCATTCTTTTTTGAGTTTGCT
TGTGATTTTTCTTGGAGCGACCACAACTTTTCTTTCATTGATCGACTCTG
TTCCTTCACCGGTTGTATCAGGTATTGCGGCCCTGACCACTCTTTCATCG
GCTGTTGCTGCGTTTTTGAGGCCCCATGACCGACGCCTAGCACAGGTGAG
TAATAACGAAACCAAAACACACACTCCTGTCACAGTGCTATTATGAAGCT
ATTTccttcagtggggatgaaaatccGATTGGGGATAGAAGTTCATTCCC
AGCTCAAATAATCCAGTGGAAATGGTTTGGGAGGGTAATTTTTCCATTGA
ACTTCAGATAGGTATATTTTTTCTCACaaggaatgaaaattttcctgtGG
GGCGTGGCTCCCAAAGGGTCTTTGACACGGTGTGTCGAAACAGATCACCC
AATATTGTTTCTCTAGCGTACCTCTATAATACACCTCTGTATCAGTGTCT
TGACATTTTTAGTTTCCTACTGTCAAAAACAACTAATTTTGcaaattagc
ctccgtctcagaacgcggtcagaaaattttgcggataatttcacagcgaa
aatgcatccagtgaaatgcgagtaatgtatcatgattcaagtcgactgac
ataattatacacataatacatattacaagttctgcctacggattctcaag
ctcagctattataaaactattacatgttagtagcagacccgactgaccaa
tgttatgtagcaggttgaaacatgagtttttactggaaagatgcagtttg
ttttcaagttaaatctttaaaataaatcaaattgtGTGGggttctttact
tccaaacaacctttggaacactccataataaaggaagatggctgttcttg
tggattggctttctgataccccatataaacacgatgtgacatgaaaatga
agagacatgatttgttggtttttgtttgatttgttgactcatatatctca
tgacaaatgggatagcaaatgacttttcATGTATTGCTTGGCTCTACATA
TAATACCtctaactttgaacacctccagaatgttgaaaaaagcattttac
gagataagtttcaattataattttcatggaaatttttaatcgccagattt
ggcttggtgttagttttgtttggttgatgtttggtattgtgatcattaaa
agcaatgaaatgccacacagtcactctacacatgatgcctccagccatga
ttgcggtatcagaatgttggaaaaaaacattttacgagaaattgttgata
gaaattatattgacttatttttacaattttggcggtgtgggtttagttgg
ttgataatgtttacactgtgggatggttttcaaaaaactgttatattgat
tgttgtttgttggaattgattataccaaaaaaaaagagaacctttttttg
ataactactttatttttttcacgaATCGAAAAAActgtgtggatagtatg
tcttgtagtaaccaatgcagtgtctgttttcaaattttgaaagctctata
tacctactgaatctgtgaattgaagctctgactagctctatatttaaaac
tttgagccatgtttttttcttaaattgtcGTTACAATGTAAATtgatggt
aaagttttagttattttgagtttagttcatcagtagtacatacagtagta
ttttttcagtaatcttttcttgtaaatatagtaacatttaaccagactca
ctGGCCTCATTatatcaaatttgtatttttctagGACTgaaaagtacata
tttttaaacaccaaaacaaagcaaacaacatgccagttctttctggacaa
atatatatgtatactttattgtgtgttttgagttctattttaatcaaccc
tctcaactgccaGTATAGACctaaactcgtatatcaagattacgggattt
cgagtgcGGGCCGATTTTTAGCAGTTTcagtttcgatttcaagcaGACAT
CTTAGCAACGAAGTACTCANatgaaaaatccgacaatattccgtcataat
tttatttctttgaattatttaggtaaaaagattgatagagcttgaacact
ACTCCTAatgtataaaaaaattatttttgaatttttttacaagtttgcaa
tatattttatcaacattttaaactctgaaatgcagaatttcaactgcgtg
taaacttttgaattttttttgtcactccaataattttttttatgactcga
aagaaatagcttgccaaagttaaAAGCCTGTGTAATAATAATATCAAAAT
TAgcatgtgacactctctaaaattattagacacttttaagtcaaaattta
gaaatattagtcggagttttgacaagttgacgatgattttgcctctgtta
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NNNNNNNNNNNNNNNNNNNNNNAGCCTAATTTTGGGcgtacgccaattag
ggccgaaATTTGTAGAAATGGCTACTTGTGCTTCAAATTAGCCAATAATG
ACTGCAAAATTTACATTAGTGAGcctgttgaaaatttcatcgaaaatcac
tgattttcaaatatattaaatatttcactgaagttttCCATATGGattaa
aacaatggataattttcgtcttcgaatcatacctaaaatcctttaaattg
agaaataatgatacAAATTAacgtagactggagtcgtttataatgcgtgt
aatactaataataccaatactaataataataatacgggacttagtttgta
taaacgactggaagaatccggtgttccagccttatagataccctggctag
ctacgcagaaacttgcgtagcgagaaaacaatttatcaagcaacaacaaa
ctctcaaaacgaaatcaactcaaataaaaaactttcaatacacaaatcca
cacatattttttttctcaagaattattttgagcaggagaaaattataatt
gcaatattgacacttttcttttgtttggagttagtgcacaaaggtttcta
gacgactaaaattgtttcattcattactttttgctttatttctactatgt
ataaattagtcgtctagcttgctagactaaaattaacgccgcttttaggt
taaaattgcaaaatcttggccTTTTTAACGCTGGctttttaacgccggcc
cttattaggctacgagcccaaaaataatgCCAGtaaagggccggtgtaaa
aagggccgataaggtactctcgggtacctaatagccggagggattggaat
aagcggcggggggggggttggaaagaATCTCGAAAAagggtaccccctga
aatccCTCCACCCACTACATAAGGCTCTGATGACAAGGATTTGTGGACGG
TAAaaaacatccaatttttttggaaagtggACAAAAATGCGAAAAGGCTA
AACCCCTGAcgagaaaaaatcatttccggacAAATGATTTAAATAGTAAG
TCCTTCAAGATCCGTAATTCGTAACCTTCAGCGTCTGCTTTCTTTCTCGT
GTTTAAAAATGAAACGGTGAAAAACCAAAGAATTAtcaatcaaataaaaa
gaaagaacatACCCCTAATACTATAGTATGGGTTACTCTCGTGTGCCcaa
ttaccttaagtggataaattttagcagGGATTAGATTTAgcgaatttggc
aaattttgtcaaaaatcgcCATATTTAATCCATGCCAAAGATTCTTAAGG
TAATATTACCACTTAAGGTAATAGCCGGTGGTATGTGATAAAAAATCCCA
AAACTTACCTAGTAGGAATAAGaattatgaaattgtcaatatattttctt
tttcagttacaaaaatactaaaatatctCACACGGGACCACGGGACGAAA
CGACGTAAACAATTGAAAGAATACTCAAAGCAATGAAACAACACGAACAC
CCTCGCGCCATCCAGGAATATTATGCTAATGGCAGCTTAAAAATGAGAAC
GTAAGTGATTATACATCTTGACTTGTTCCATAcccacaaaccaaattctt
GCAAATATATTAAAGGGTAAACTTCTGTGCTTCAATGCCTCAGAGTGTTT
GTGCCCGTTCCCCGTTTATTGATTGTCGAATTTAAAGCAGAAGAAAAATT
TCCGGGTATAAGTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNAGTAATTCAGACTGGATCTCTGTACTATTATC
GTAAAATCTAAATCCACTAAAAACAGACCTTTGTTCTATTGGTTTTTATG
TTCTTTTATGTCCCTTTCCTAACAGGCTAATAAACGACTCGGACTTTTTG
AGACAGGGACGTTCCCCTCGCACAAATGAAACATGTATACCAACGCTtcc
attttttttctcagaataTTGCTTGACTTAAAGACGAAAGGCCCAAAGAA
CCGTCCGTGACAGACAAATATTATCGTCAAGCTGTGAAGTAAAAATTGAT
GATAGTGTTACCTAATTGTAATTTATCGAAAGTGTACGTAAGGTATAAAA
GCTAAAAGAATAAAAGTATATCTggctaaaaaatataaaagccaTGGATC
ATTTTACAATTAGaaatatctttgttttcttttcgtttttcttctaGCGC
CGGACTTGATTTCTAAATagagaaaaatacaatatatAGAGTCACTCTAA
AAGCACCCCGTGCTCATCACAGTAAACagctccactggaaaatttaacca
aatttcatttcatggaaaattaacttttaatttaattaaatcttaatttg
aaattcaatagatTTATATCCCCcgttgggatttcgatagaaatttgtCC
CGAATCCCCACTTCCACCGGGATCTGTGAGACAGGGTGCTCAAAAGTACA
TATATCGTAGAAAAAACTATGACGTATAGCGAATAGGCCACAGGGTGAGG
TATAAAATTGAATGGGGATTAAACATATTTCTCGTTTTGATGGCAGTATA
ACTTTGACAGTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNttctgcttgaaaacgctgtcgt
atagccgaaaacgaaagtgaaactgtgaaaacgtccgcaaattcaggccc
agtcctcttccgagacggaggctaattaaaagaaaatcaccGAAAAGCCA
GGACCTAAACTCTTCAAGAAATGAATAAAGTTTCTTTTATTATCATCCAC
TTACCCTAACTTACGTTTGAAACTGAGAAATACTTAAATCaaagtttata
aagaaaaatttacctTTGGGAGTCCATGTTAACTAATTTCTCCCATTTGC
CCTATTTTATTATGCTACTATGTGTATTCTCTTGGTGGTGACATGATAGT
TCCATGAACTTCATCTTCTGCATGTCTTCTTCCCCATCTATATCTGTCTT
GCATTAGCCATTATCTAAATTTTATGCAGTTTCTTCTGCTATGATGGCCT
AGTGTTTTGGTGGAGCAATCTGAGATTTTCAGTTCCAGTTTAAGAAAGTA
GGGTTTTGAGTGATCGAAGAATGTCTAATTTCTCCTATGTTGTTTTCAGG
TCGAATCAGCCAAAGAGTTTCGAATCCTGATGATGAGGATGGTGCGTTGT
GAGCATGAATCTGAATATGAAGATCTCTGGCGAGAACTGAACAAAGCATT
GATGGATGAGCCTTTCCTACCAAAGAAGTATATCGCCAATGCTATGGAGA
TGAACTGGTCGATAACACCAGAGCTGTTAATGATCATTGTTGAGAAAGAG
AATGAACTTGTGGAAGCTATTGGTGATGAAGCAACGAAATTGATGGAGGA
AGAAAGACAAACGAGAGAAGATGAGAAAATTCAGTTCGCCGAAGCTGAGA
ATCGCCACCAGAATGGGAATGTAATGATTGATGCAGCAGCTGATGCAGTT
ACTTCCATTTTCAGTCAATTTAAAGATAAAAGAGTTGATTTGAATTCTTC
AGtcaacttttttgggaaattaaTCCCTCATGACACCTTTGGTGCTGTCA
CCAATGGCGATAAACAAGAATCAGGTTTTGAAATGAAGGAGAATAAGGTC
TTGGTGGTCAACCCAGATGATTGCTCACATAATGATGATGCCAATATCAA
TGATGACATTTCAGATGGATCAGAGAGTAACGACATCGGCAATGAAAACG
ACAAACTACTTCCTGAGAATTCAGAAAATAATGAAGTAGTTCTGAAAAAC
GATGAATGTGAGAATCGCAGTTCAGGTTCAGCTTCCTCTTTCCCTCGTGA
TGAAATGTCGACTgatgaaaaagtaaaacttaTACCCCAAGAGTAATTTG
TGTGTTAATTTGTTTAATAACACGCCCATTATGTGGATCTCACTAAATCT
AGTGACTATATTTGTAAGCTTAGCCAAATGTAAAATAAATCTACTTTGAT
TAGCTAAATCTAGTGACTATATTTTAAAGCTCTTATGCAGGTATGAAATA
AATGTATTCTGATAAAATTAAGATACAAACAAATATACGCA Coding sequence (CDS) from alignment at sc0000134:15659..25199+ >TCONS_00011911 ID=TCONS_00011911|Name=TCONS_00011911|organism=Clytia hemisphaerica|type=CDS|length=2010bp|location=Sequence derived from alignment at sc0000134:15659..25199+ (Clytia hemisphaerica) ATGGGGATGCGAGAAAATTGGCACCGCTATATTGACATAACTAAATCAAA GTGTAAAGGCCATGAGAAGGCTGCACAGTACTGGGATTTCATGCATTCTT TTTTGAGTTTGCTTGTGATTTTTCTTGGAGCGACCACAACTTTTCTTTCA TTGATCGACTCTGTTCCTTCACCGGTTGTATCAGGTATTGCGGCCCTGAC CACTCTTTCATCGGCTGTTGCTGCGTTTTTGAGGCCCCATGACCGACGCC TAGCACAGGTCGAATCAGCCAAAGAGTTTCGAATCCTGATGATGAGGATG GTGCGTTGTGAGCATGAATCTGAATATGAAGATCTCTGGCGAGAACTGAA CAAAGCATTGATGGATGAGCCTTTCCTACCAAAGAAGTATATCGCCAATG CTATGGAGATGAACTGGTCGATAACACCAGAGCTGTTAATGATCATTGTT GAGAAAGAGAATGAACTTGTGGAAGCTATTGGTGATGAAGCAACGAAATT GATGGAGGAAGAAAGACAAACGAGAGAAGATGAGAAAATTCAGTTCGCCG AAGCTGAGAATCGCCACCAGAATGGGAATGTAATGATTGATGCAGCAGCT GATGCAGTTACTTCCATTTTCAGTCAATTTAAAGATAAAAGAGTTGATTT GAATTCTTCAGtcaacttttttgggaaattaaTCCCTCATGACACCTTTG GTGCTGTCACCAATGGCGATAAACAAGAATCAGGTTTTGAAATGAAGGAG AATAAGGTCTTGGTGGTCAACCCAGATGATTGCTCACATAATGATGATGC CAATATCAATGATGACATTTCAGATGGATCAGAGAGTAACGACATCGGCA ATGAAAACGACAAACTACTTCCTGAGAATTCAGAAAATAATGAAGTAGTT CTGAAAAACGATGAATGTGAGAATCGCAGTTCAGGTTCAGCTTCCTCTTT CCCTCGTGATGAAATGTCGACTgatgaaaaagtaaaacttaTACCCCAAG AGTAAATGGGGATGCGAGAAAATTGGCACCGCTATATTGACATAACTAAA TCAAAGTGTAAAGGCCATGAGAAGGCTGCACAGTACTGGGATTTCATGCA TTCTTTTTTGAGTTTGCTTGTGATTTTTCTTGGAGCGACCACAACTTTTC TTTCATTGATCGACTCTGTTCCTTCACCGGTTGTATCAGGTATTGCGGCC CTGACCACTCTTTCATCGGCTGTTGCTGCGTTTTTGAGGCCCCATGACCG ACGCCTAGCACAGGTCGAATCAGCCAAAGAGTTTCGAATCCTGATGATGA GGATGGTGCGTTGTGAGCATGAATCTGAATATGAAGATCTCTGGCGAGAA CTGAACAAAGCATTGATGGATGAGCCTTTCCTACCAAAGAAGTATATCGC CAATGCTATGGAGATGAACTGGTCGATAACACCAGAGCTGTTAATGATCA TTGTTGAGAAAGAGAATGAACTTGTGGAAGCTATTGGTGATGAAGCAACG AAATTGATGGAGGAAGAAAGACAAACGAGAGAAGATGAGAAAATTCAGTT CGCCGAAGCTGAGAATCGCCACCAGAATGGGAATGTAATGATTGATGCAG CAGCTGATGCAGTTACTTCCATTTTCAGTCAATTTAAAGATAAAAGAGTT GATTTGAATTCTTCAGtcaacttttttgggaaattaaTCCCTCATGACAC CTTTGGTGCTGTCACCAATGGCGATAAACAAGAATCAGGTTTTGAAATGA AGGAGAATAAGGTCTTGGTGGTCAACCCAGATGATTGCTCACATAATGAT GATGCCAATATCAATGATGACATTTCAGATGGATCAGAGAGTAACGACAT CGGCAATGAAAACGACAAACTACTTCCTGAGAATTCAGAAAATAATGAAG TAGTTCTGAAAAACGATGAATGTGAGAATCGCAGTTCAGGTTCAGCTTCC TCTTTCCCTCGTGATGAAATGTCGACTgatgaaaaagtaaaacttaTACC CCAAGAGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00011911-exon-sc0000134-1491911889:15659..16053 | TCONS_00011911-exon-sc0000134-1491911889:15659..16053 | Clytia hemisphaerica | exon |
TCONS_00011911-exon-sc0000134-1510915933:15659..16053 | TCONS_00011911-exon-sc0000134-1510915933:15659..16053 | Clytia hemisphaerica | exon |
TCONS_00011911-exon-sc0000134-1575043694:15659..16053 | TCONS_00011911-exon-sc0000134-1575043694:15659..16053 | Clytia hemisphaerica | exon |
TCONS_00011911-exon-sc0000134-1491911889:24258..25199 | TCONS_00011911-exon-sc0000134-1491911889:24258..25199 | Clytia hemisphaerica | exon |
TCONS_00011911-exon-sc0000134-1510915933:24258..25199 | TCONS_00011911-exon-sc0000134-1510915933:24258..25199 | Clytia hemisphaerica | exon |
TCONS_00011911-exon-sc0000134-1575043694:24258..25199 | TCONS_00011911-exon-sc0000134-1575043694:24258..25199 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000134 | supercontig | sc0000134:15659..25199 + |
Blast
The following BLAST results are available for this feature:
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