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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011905 ID=TCONS_00011905|Name=TCONS_00011905|organism=Clytia hemisphaerica|type=transcript|length=1141bp
CTCAGacgtaaaaaaaatcataaatagaAAGTAAAACAAGAAGAAGGATA
CTGGATCAACCAACACtgttaaaatgaagaaaaacaatTATGGTGTGCAA
GGAACATCCAAAGATCTGGAAGTGATCACTGAAGAATCTGTCATCCAATA
CTTAAATGAGATTCTCGATATGTATCTAGATGAACCACCCTTTAGAGAAC
CGCCTTTAAAATCACCACCCTCAACACCCTTCGATGATGAAATGTTTTTC
TTCGAGAAAGAGGGCGAACCTTCGCCACAAGGACAATCACCCGATTCAAC
GACACAGTTGAATCGAAAAGATTCGAAGGTCTTCGATATACATTACTCCA
ATAATGGTAGAGAGCGTCAAAATCGAAGGGATTCGAAAGAATCGAGAACA
AGTCGGAGGGGAAGTGTTGAAATCAAACAACACTGTGCAAGTGACAAAAC
TCGAGAAGCTCGAAAACAATCGAATAGAGTATCGTACCCTGGATGTATCG
ATAAATTATGTTCGAATACAGCAGATCGATATCATTACAACCTTCACGAA
TCAACACACGAAAAGTCATTTAGGAGAGTCGATAGTATCGATTTACATAA
TATCGAGTCCCCTCAACAATCTTCAAGTAGTAAAAACGATGAAATACAAC
CTAAACCAAGACTGTCATTACAAAAAAATCGAGTAAAATCGAAAGATGAA
AATCGAAAACTATCGAATGCCAACCCCGATGACATACAGTCAAGAACGCG
ATATTCGATTCAAGAGACGCGAGTCGTAACGAGAAAAACGACTGTATCGA
ACAATGCTAATCGAGAGAAACAAGAACCTGAAACCGACGAAATAAGGGCA
CGAACATCTTCgttaaatttgaacaaaaatcgtaaaaaatcgATCGACGA
GATTACGCAACGACAATTAAGAAGTCGTTCTACAGTCTGTCGACCTTCTC
CGAATAGGGAATACACCATTTCGTTATATAAAACGACAGACACGGTCGGC
AAAAAGTCGGGACTTGAACAAAGTACAGAGTTAGTTTGTACGATGCAAAT
GTCAtgatatttttttcagttttattgTGGAAATTGAGTTTGTATCTCAA
AGAAATCAATGATCCATTTTTCGGATCAATTAATATAATAT Run BLAST on NCBI protein sequence of TCONS_00011905-protein >TCONS_00011905-protein ID=TCONS_00011905-protein|Name=TCONS_00011905-protein|organism=Clytia hemisphaerica|type=polypeptide|length=327bp
MKKNNYGVQGTSKDLEVITEESVIQYLNEILDMYLDEPPFREPPLKSPPS
TPFDDEMFFFEKEGEPSPQGQSPDSTTQLNRKDSKVFDIHYSNNGRERQN
RRDSKESRTSRRGSVEIKQHCASDKTREARKQSNRVSYPGCIDKLCSNTA
DRYHYNLHESTHEKSFRRVDSIDLHNIESPQQSSSSKNDEIQPKPRLSLQ
KNRVKSKDENRKLSNANPDDIQSRTRYSIQETRVVTRKTTVSNNANREKQ
EPETDEIRARTSSLNLNKNRKKSIDEITQRQLRSRSTVCRPSPNREYTIS
LYKTTDTVGKKSGLEQSTELVCTMQMS Run BLAST on NCBI transcript from alignment at sc0000133:331600..332740 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00011905 ID=TCONS_00011905|Name=TCONS_00011905|organism=Clytia hemisphaerica|type=transcript|length=1141bp|location=Sequence derived from alignment at sc0000133:331600..332740 (Clytia hemisphaerica)
ATATTATATTAATTGATCCGAAAAATGGATCATTGATTTCTTTGAGATAC
AAACTCAATTTCCAcaataaaactgaaaaaaatatcaTGACATTTGCATC
GTACAAACTAACTCTGTACTTTGTTCAAGTCCCGACTTTTTGCCGACCGT
GTCTGTCGTTTTATATAACGAAATGGTGTATTCCCTATTCGGAGAAGGTC
GACAGACTGTAGAACGACTTCTTAATTGTCGTTGCGTAATCTCGTCGATc
gattttttacgatttttgttcaaatttaacGAAGATGTTCGTGCCCTTAT
TTCGTCGGTTTCAGGTTCTTGTTTCTCTCGATTAGCATTGTTCGATACAG
TCGTTTTTCTCGTTACGACTCGCGTCTCTTGAATCGAATATCGCGTTCTT
GACTGTATGTCATCGGGGTTGGCATTCGATAGTTTTCGATTTTCATCTTT
CGATTTTACTCGATTTTTTTGTAATGACAGTCTTGGTTTAGGTTGTATTT
CATCGTTTTTACTACTTGAAGATTGTTGAGGGGACTCGATATTATGTAAA
TCGATACTATCGACTCTCCTAAATGACTTTTCGTGTGTTGATTCGTGAAG
GTTGTAATGATATCGATCTGCTGTATTCGAACATAATTTATCGATACATC
CAGGGTACGATACTCTATTCGATTGTTTTCGAGCTTCTCGAGTTTTGTCA
CTTGCACAGTGTTGTTTGATTTCAACACTTCCCCTCCGACTTGTTCTCGA
TTCTTTCGAATCCCTTCGATTTTGACGCTCTCTACCATTATTGGAGTAAT
GTATATCGAAGACCTTCGAATCTTTTCGATTCAACTGTGTCGTTGAATCG
GGTGATTGTCCTTGTGGCGAAGGTTCGCCCTCTTTCTCGAAGAAAAACAT
TTCATCATCGAAGGGTGTTGAGGGTGGTGATTTTAAAGGCGGTTCTCTAA
AGGGTGGTTCATCTAGATACATATCGAGAATCTCATTTAAGTATTGGATG
ACAGATTCTTCAGTGATCACTTCCAGATCTTTGGATGTTCCTTGCACACC
ATAattgtttttcttcattttaacaGTGTTGGTTGATCCAGTATCCTTCT
TCTTGTTTTACTTtctatttatgattttttttacgtCTGAG Coding sequence (CDS) from alignment at sc0000133:331600..332740 >TCONS_00011905 ID=TCONS_00011905|Name=TCONS_00011905|organism=Clytia hemisphaerica|type=CDS|length=984bp|location=Sequence derived from alignment at sc0000133:331600..332740 (Clytia hemisphaerica)
tcaTGACATTTGCATCGTACAAACTAACTCTGTACTTTGTTCAAGTCCCG
ACTTTTTGCCGACCGTGTCTGTCGTTTTATATAACGAAATGGTGTATTCC
CTATTCGGAGAAGGTCGACAGACTGTAGAACGACTTCTTAATTGTCGTTG
CGTAATCTCGTCGATcgattttttacgatttttgttcaaatttaacGAAG
ATGTTCGTGCCCTTATTTCGTCGGTTTCAGGTTCTTGTTTCTCTCGATTA
GCATTGTTCGATACAGTCGTTTTTCTCGTTACGACTCGCGTCTCTTGAAT
CGAATATCGCGTTCTTGACTGTATGTCATCGGGGTTGGCATTCGATAGTT
TTCGATTTTCATCTTTCGATTTTACTCGATTTTTTTGTAATGACAGTCTT
GGTTTAGGTTGTATTTCATCGTTTTTACTACTTGAAGATTGTTGAGGGGA
CTCGATATTATGTAAATCGATACTATCGACTCTCCTAAATGACTTTTCGT
GTGTTGATTCGTGAAGGTTGTAATGATATCGATCTGCTGTATTCGAACAT
AATTTATCGATACATCCAGGGTACGATACTCTATTCGATTGTTTTCGAGC
TTCTCGAGTTTTGTCACTTGCACAGTGTTGTTTGATTTCAACACTTCCCC
TCCGACTTGTTCTCGATTCTTTCGAATCCCTTCGATTTTGACGCTCTCTA
CCATTATTGGAGTAATGTATATCGAAGACCTTCGAATCTTTTCGATTCAA
CTGTGTCGTTGAATCGGGTGATTGTCCTTGTGGCGAAGGTTCGCCCTCTT
TCTCGAAGAAAAACATTTCATCATCGAAGGGTGTTGAGGGTGGTGATTTT
AAAGGCGGTTCTCTAAAGGGTGGTTCATCTAGATACATATCGAGAATCTC
ATTTAAGTATTGGATGACAGATTCTTCAGTGATCACTTCCAGATCTTTGG
ATGTTCCTTGCACACCATAattgtttttcttcat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00011905-exon-sc0000133-1491911889:331600..332740 | TCONS_00011905-exon-sc0000133-1491911889:331600..332740 | Clytia hemisphaerica | exon |
| TCONS_00011905-exon-sc0000133-1510915933:331600..332740 | TCONS_00011905-exon-sc0000133-1510915933:331600..332740 | Clytia hemisphaerica | exon |
| TCONS_00011905-exon-sc0000133-1575043694:331600..332740 | TCONS_00011905-exon-sc0000133-1575043694:331600..332740 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000133 | supercontig | sc0000133:331600..332740 . |
Blast
The following BLAST results are available for this feature:
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