TCONS_00011878 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011878
Unique NameTCONS_00011878
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1297

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011878 ID=TCONS_00011878|Name=TCONS_00011878|organism=Clytia hemisphaerica|type=transcript|length=1297bp
ATGTACACATACCAGATGCTACAATTTCGGTCAAATTACATCGAGAATTT
TGaAATCGTCAACAAACATCTCACACACAACACAAACCAAAAGTGAGCAA
CAAACAAAATGGAATCACTAACTACAAACCACCTcaacaaccaaccaaaa
tatctcaaaatcgtCACGAACCTATTAGAGAAACATTTCGTAAAACAGTA
CCGCCTAgtgaaatagaaaataactTCCAAGAAAATGGCCAAAGCAACAA
CAATAATGGTAGatattgtaaacaaaatggTATTTACGGACgtgatgaag
atcataataatgGTGTCGTTCAAAATGGTAAACTTAACAATGGATATAAG
ACAGACAACGAGGGCACTGAAATAATGGATGAATTTGGAACTATTTTTGA
TGAACATATAAAGGACCAAGAATCAAATCACACGGATGAAGCGGTCGATG
AAAATGAGCGCGCGACAAGACGAAGTAAAGGTTCAGATAATAGCACAGTC
ATTAATGTATCCGATGAGAAAATGCGTTCTAATATAGAAATGGAAGATCT
TGCATCTCCGATTAAGAACTCGAACAACAATGATTTGAATGAAACAATAA
CATCTGTAAAACATGTCCAACTGAACGAACGAGTGTCAACCCCCTTGTCG
ACTAACGGAGACGGGGGTAACAATAATGAACTTGGAACAGTTATTGGCAG
TCATAACCAACCAACTTATGTAGACAGTAGTTGATGAGTCGCTTACTCCA
TTAAAGGTTAAATTTGTCGTCGAAGCTTCTTAAAGAAGGTGATATTCACA
CCTTTGTTTACCTTCGCCGTCTACAGATATCTCAATACGAAATACTAGAT
CGaacttctttatttttcgtaTGCAAGCCACGGCAGGTGAAACACGAAAC
AATACGCCATATTTACTGAAAGTATAAACACAGTATAAACCTTGATTATC
GCAGTGCTTAAATATTTTGACACTGTATTGACTTGAATTTCAAAGAACGC
GCAAGTAAATTAGGACGTCACTCTATTAAAGATGGCGCATGCTAGTTTCT
AGAGTCCAACTGACTACGGAGAAAAATGAGTATCTTATAGTAGTTgtcat
tttgtaaaatattttgttgtttgtaaaagatttatgctaaatttttgtat
atttatggttttatctatcaaaagtgaaaatgtcatttaaacagAATGAT
AATCAATTTCTACAAAGTGATGCGAATATTAGGAGAATAATTCTGATAAG
AGCTTTAGTGGTATCTAGGTTTCAGAGACCCAAGAACCTTTTAATCC
Run BLAST on NCBI

transcript from alignment at sc0000133:414858..416561-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011878 ID=TCONS_00011878|Name=TCONS_00011878|organism=Clytia hemisphaerica|type=transcript|length=1704bp|location=Sequence derived from alignment at sc0000133:414858..416561- (Clytia hemisphaerica)
ATGTACACATACCAGATGCTACAATTTCGGTCAAATTACATCGAGAATTT
TGGTTAGTTCCTCGTTTTTAAGAATTTAAAGTTGGGGCGAGAAAGTCGCT
TTTTGGCTATTTGTTAAATTTTATCGAATATTTAAATTCGGGAGGGGTTT
ATAGACTTCTAGGTTATATTCTGAGCACTATTGGACCATCCTTGAACTTT
TGGATCCTCAGATCTTAAGTCTTAATTGTCTTAATAATCTTAATTTTAAA
ATTCAGACTTGAAACTCTACCCTCCCAACCTAAGTTAGAGCGTTTCCAAA
CCGTTTGTTGCTATAAGACTTCATGGGAATTTCCCTTTTTTCTCAAATAT
TGTGACTTTCATTGTAGATTTTTTTGACTAAAGTCAACTTTTGCTAAAAG
CCCTCAACGATTACAATATTGGGTAACCACTCAAAATTCTTAAATTTCTC
TTTTTTAAGAAATCGTCAACAAACATCTCACACACAACACAAACCAAAAG
TGAGCAACAAACAAAATGGAATCACTAACTACAAACCACCTCAACAACCA
ACCAAAATATCTCAAAATCGTCACGAACCTATTAGAGAAACATTTCGTAA
AACAGTACCGCCTAGTGAAATAGAAAATAACTTCCAAGAAAATGGCCAAA
GCAACAACAATAATGGTAGATATTGTAAACAAAATGGTATTTACGGACGT
GATGAAGATCATAATAATGGTGTCGTTCAAAATGGTAAACTTAACAATGG
ATATAAGACAGACAACGAGGGCACTGAAATAATGGATGAATTTGGAACTA
TTTTTGATGAACATATAAAGGACCAAGAATCAAATCACACGGATGAAGCG
GTCGATGAAAATGAGCGCGCGACAAGACGAAGTAAAGGTTCAGATAATAG
CACAGTCATTAATGTATCCGATGAGAAAATGCGTTCTAATATAGAAATGG
AAGATCTTGCATCTCCGATTAAGAACTCGAACAACAATGATTTGAATGAA
ACAATAACATCTGTAAAACATGTCCAACTGAACGAACGAGTGTCAACCCC
CTTGTCGACTAACGGAGACGGGGGTAACAATAATGAACTTGGAACAGTTA
TTGGCAGTCATAACCAACCAACTTATGTAGACAGTAGTTGATGAGTCGCT
TACTCCATTAAAGGTTAAATTTGTCGTCGAAGCTTCTTAAAGAAGGTGAT
ATTCACACCTTTGTTTACCTTCGCCGTCTACAGATATCTCAATACGAAAT
ACTAGATCGAACTTCTTTATTTTTCGTATGCAAGCCACGGCAGGTGAAAC
ACGAAACAATACGCCATATTTACTGAAAGTATAAACACAGTATAAACCTT
GATTATCGCAGTGCTTAAATATTTTGACACTGTATTGACTTGAATTTCAA
AGAACGCGCAAGTAAATTAGGACGTCACTCTATTAAAGATGGCGCATGCT
AGTTTCTAGAGTCCAACTGACTACGGAGAAAAATGAGTATCTTATAGTAG
TTGTCATTTTGTAAAATATTTTGTTGTTTGTAAAAGATTTATGCTAAATT
TTTGTATATTTATGGTTTTATCTATCAAAAGTGAAAATGTCATTTAAACA
GAATGATAATCAATTTCTACAAAGTGATGCGAATATTAGGAGAATAATTC
TGATAAGAGCTTTAGTGGTATCTAGGTTTCAGAGACCCAAGAACCTTTTA
ATCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006668XLOC_006668Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011878-exon-sc0000133-1575043694:416510..416561TCONS_00011878-exon-sc0000133-1575043694:416510..416561Clytia hemisphaericaexon
TCONS_00011878-exon-sc0000133-1575043694:414858..416102TCONS_00011878-exon-sc0000133-1575043694:414858..416102Clytia hemisphaericaexon
TCONS_00011878-exon-sc0000133-1510915933:416510..416561TCONS_00011878-exon-sc0000133-1510915933:416510..416561Clytia hemisphaericaexon
TCONS_00011878-exon-sc0000133-1510915933:414858..416102TCONS_00011878-exon-sc0000133-1510915933:414858..416102Clytia hemisphaericaexon
TCONS_00011878-exon-sc0000133-1491911889:416510..416561TCONS_00011878-exon-sc0000133-1491911889:416510..416561Clytia hemisphaericaexon
TCONS_00011878-exon-sc0000133-1491911889:414858..416102TCONS_00011878-exon-sc0000133-1491911889:414858..416102Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000133supercontigsc0000133:414858..416561 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.357265	0.0230914	2.22545	1.89545	2.51583	0.585149	1.53531	3.05704	0.699079	0.551527	0	0	0	0	0	0.622927	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00011878 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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