TCONS_00011858 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011858
Unique NameTCONS_00011858
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1686

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011858 ID=TCONS_00011858|Name=TCONS_00011858|organism=Clytia hemisphaerica|type=transcript|length=1686bp
AAAAGAACCAATCAAATTATTTGATTATCAAGAGACCCCTTGACAACTGT
CATGTGGTTACGAAATCTCGCTTTTGATTGGATGCTTTAAAAATGTGAGG
AGTATTAGTAATATAAACGCGAGGTTTGAGTAACTTTTGAAATCACTTGT
TTTTGAGAAGAGAGCAGAGCGCGAATCGTTACATCGCAATTTTCTCTCCA
ATTTTCAAGGATAAATTGTTAACTCTTTTTAAGAAAAAGCAAAACGCTCG
TTACTACACTACTAAATCAACATGCGTGAATGTATCTCAGTCCATGTTGG
CCAAGCTGGCGTCCAAATGGGAAATGCTTGTTGGGAATTGTACTGTTTGG
AGCATGGAATCCAACCTGATGGTCAAATGCCTTCAGACAAAACCATCGGA
GGTGGAGATGATTCATTCAACACTTTCTTCAGTGAGACTGGTGCTGGTAA
ACATGTCCCAAGAGCTGTTTTCATCGATCTTGAACCCTCAGTTGTTGATG
AGGTTCGTACAGGTACATACCGTCAACTCTTCCATCCTGAACAACTGATC
ACTGGCAAAGAAGATGCTGCCAATAACTACGCTCGTGGTCATTACACTGT
TGGTAAAGAACTCATTGACCAAGTCTTAGATCGTATCCGAAAACTCGCTG
ATCAATGTACTGGTCTTCAAGGATTTTTGATCTTCCACTCTTTCGGTGGT
GGTACCGGATCTGGATTCACTTCATTGTTGATGGAACGTCTTTCCGTCGA
TTATGGAAAGAAATCTAAATTGGAATTTGCTGTTTACCCAGCACCCCAAA
TCTCTACAGCTGTTGTTGAACCATACAACTCTGTATTGACCACCCACACC
ACATTGGAACACTCTGACTGTGCATTCATGGTTGATAACGAAGCCATCTA
CGATATCTGCCGACGAAACTTGGATATTGAGCGTCCAACCTACACTAACT
TGAACAGATTGATTGGTCAAATTGTTTCTTCGATCACTGCATCTTTGAGA
TTCGATGGTGCTTTGAATGTCGATTTAACTGAGTTCCAAACCAACTTGGT
GCCATACCCACGTATTCATTTCCCCTTGGCAACTTATGCTCCAGTTATCT
CTGCTGAGAAAGCCTATCATGAACAACTTACTGTCTCTGAAATCACCAAT
GCCTGTTTCGAACCAGCCAACCAGATGGTCAAATGCGATCCACGACATGG
TAAATACATGGCTTGTTGTCTGTTGTACCGTGGAGATGTTGTCCCTAAAG
ACGTCAATGCAGCTATCGCTACCATCAAAACCAAACGTACAATTCAATTT
GTCGATTGGTGTCCAACTGGATTCAAAGTTGGAATCAATTACCAACCACC
AACCGTTGTTCCAGGAGGTGATCTCGCTAAAGTTCAACGTGCTGTTTGTA
TGTTGTCCAATACCACTGCAATTGCTGAAGCTTGGGCTCGTTTGGATCAT
AAATTCGATTTGATGTACGCCAAACGTGCTTTTGTACATTGGTATGTCGG
AGAAGGTATGGAAGAAGGTGAGTTTTCAGAAGCTCGTGAAGACATGGCAG
CCTTGGAGAAAGATTACGAAGAAGTCGGTGTTGATTCTATTGATGACGAT
GGAGAAGGCGAAGATGACGAATATTAAGGAGATAATATATATAAGGGAGA
TAAACACCATTCTGTAaccattttaaagaatataat
Run BLAST on NCBI

protein sequence of TCONS_00011858-protein

>TCONS_00011858-protein ID=TCONS_00011858-protein|Name=TCONS_00011858-protein|organism=Clytia hemisphaerica|type=polypeptide|length=451bp
MRECISVHVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFN
TFFSETGAGKHVPRAVFIDLEPSVVDEVRTGTYRQLFHPEQLITGKEDAA
NNYARGHYTVGKELIDQVLDRIRKLADQCTGLQGFLIFHSFGGGTGSGFT
SLLMERLSVDYGKKSKLEFAVYPAPQISTAVVEPYNSVLTTHTTLEHSDC
AFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNV
DLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVSEITNACFEPAN
QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTG
FKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYA
KRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGVDSIDDDGEGEDDE
Y
Run BLAST on NCBI

transcript from alignment at sc0000133:206758..211082-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011858 ID=TCONS_00011858|Name=TCONS_00011858|organism=Clytia hemisphaerica|type=transcript|length=4325bp|location=Sequence derived from alignment at sc0000133:206758..211082- (Clytia hemisphaerica)
AAAAGAACCAATCAAATTATTTGATTATCAAGAGACCCCTTGACAACTGT
CATGTGGTTACGAAATCTCGCTTTTGATTGGATGCTTTAAAAATGTGAGG
AGTATTAGTAATATAAACGCGAGGTTTGAGTAACTTTTGAAATCACTTGT
TTTTGAGAAGAGAGCAGAGCGCGAATCGTTACATCGCAATTTTCTCTCCA
ATTTTCAAGGATAAATTGTTAACTCTTTTTAAGAAAAAGCAAAACGCTCG
TTACTACACTACTAAATCAACATGGTAAGTTCAGATTTGATTCTTCTTAA
CTGGAATATTTGTATTTAACTTTTCACTAGAATATACTGTTTCAGCTCTA
ACTCTCCTTGTAAATTCGGTCCCATAAAACATAAAAATGGGTTTCAGACA
CATTATTTTATATTTTAGTTTTTTTATGCACACTAATTTTTGAATCTTCG
ATTTTTCCAGTGTTTGATATTTTCTTAAAATTATCTGCATAGCGTGAATG
TATCTCAGTCCATGTTGGCCAAGCTGGCGTCCAAATGGGAAATGCTTGTT
GGGAATTGTACTGTTTGGAGCATGGAATCCAACCTGATGGTCAAATGCCT
TCAGACAAAACCATCGGAGGTGGAGATGATTCATTCAACACTTTCTTCAG
TGAGACTGGTGCTGGTAAACATGTCCCAAGAGCTGTTTTCATCGATCTTG
AACCCTCAGTTGTTGGTAAGATTGCGTATTTTGAATCTTTATTGACTCCC
AGGGGGAGTATATGCCTTGAGAGTGGAGATTTTTTTAATTTTTTCTAGAG
TCTCTAAAGGCTCACTAAAACAAGAACAAAAACAGTCTCTCTTATTAAGG
GTTCAGTTTTTTTCACATAGTCAAGTTGCTGTTACAAAAATTAGTACTTT
CGATTTGAAGGGCGTATGAATTTCTGTTTTCCATTGGAAACTTGGAAAAC
TTATGTTCACATAACTGAAATATGCCTTCATAAAATTTCCTGTTTATAAA
CAGACGGTTTTGTTTCATTAAAATTGAAGAAGTCTTATTCGGGATATCGC
TTTTTGAAAGGGAGTTCTTAACTTTCTTATGTCTAATCTGATTATAAGAG
GTCTGCACATTTCTTATAAGAAACGCACTATATAAGAACATATGGCTTCG
ATGGCAAAAATTTTAAGAACAAGTTAAGAACATTTTGAAGCTTTGCGGAC
TCTAAAACACCCGATTTCTTAGGAAGCTTACAAAAACACTTACAAAATGG
TGAAAATAAGAACACGTTAAAGGAACATTTTTAGGCTAAATATTTAAAAG
TTAAAAGCATCCGAAGACTTTCAGAGTTTTTGTTCTTATTGAAAAAACGT
ACCGACAGATACGATCTTTTCTATTGTGAGCCTTCCAGACCTCTTGTTTG
ACGAACGAGAAAATATTAAACCCATATCAAACTCAAATGGGATTAACACC
CTTAAACCTAATTGATCCGTTCACTATTTCTAGCTATGACAATACACAAC
TTTGAATTTCTTTAAAACGTTATTCCCAAGGCTAAATTGTTTAAACACAT
TTTGTCAAATTGACTTAGCATATACTTTTTTTATACAAGAACAATTTTAT
AAGAACATTGAGACTCAAATCGCCAAAATTAAGAACAATTTAAGAACAAT
GCTGTGCCTGAAATTACTCAATTTCAAGCAATTTAAGGTTCAATAAAGTA
CTAAAAATTGGGTGTAACACCTAAAATACCTCAATAAATAAACCCTTTAA
ATAGATAAGAACAATTTGAGGCTCGAAGTGCCAGAAAATAAGGAACAGCT
GAGCCTGAGAAAAATTCTACTGGTTCTCATAAAAAAAAGTGTATCGGCTT
TGTTGATTAGCCACTCGTTGAGTTTTAAACTTCGTTTCGACACTAAAACC
CGAAAACGTTTGACTTTGGACAATTAAGTTTTCGCTTGCATTGTTATATT
TTCATTGGCATTTAAAGGCTTAAAATTTTCTTACCCTGTTATTAATTCAA
AGGGAGAAATCTAGGCTTTTTATAAGCTCTTAAAAAACCCGAGGGAGCTG
GTGCACAACTTTGTTTCAATAATCTAATGTTACACCCCTGTCTCACAGCT
CCGGTGGATCTTTTTTCCTCAGTGGGGATAAAAACTCCTATTGAAATCCC
ATTAAGGATAGAAATTTTATTGTTCCAAGGTTAAAAAATTCAGTGGGGAT
GGGTTTGGAGTGCAATATTTAAACATTGTATTTCAAATTGGGATGAAATT
TAGGGTATTTTCCCACCAGGGACGAAGTTTTTGTCAAATTTTACAGTGTG
GCTGGGATCCCAGCGGGTTTGTGACACAGGGGTGTAATGTTCACAGCATC
CATATCGTTATGGGGAATTCCCCTTTGTGTCAAATATATTCTCCTTGATT
GTATTGTAAATTTCCTTACCCTTCGTTGTAGATGAGGTTCGTACAGGTAC
ATACCGTCAACTCTTCCATCCTGAACAACTGATCACTGGCAAAGAAGATG
CTGCCAATAACTACGCTCGTGGTCATTACACTGTTGGTAAAGAACTCATT
GACCAAGTCTTAGATCGTATCCGAAAACTCGCTGATCAATGTACTGGTCT
TCAAGGATTTTTGATCTTCCACTCTTTCGGTGGTGGTACCGGATCTGGAT
TCACTTCATTGTTGATGGAACGTCTTTCCGTCGATTATGGAAAGAAATCT
AAATTGGAATTTGCTGTTTACCCAGCACCCCAAATCTCTACAGCTGTTGT
TGAACCATACAACTCTGTATTGACCACCCACACCACATTGGAGCACTCTG
ATTGTGCTNCCAAATCTCCACAGCTGTTGTTGAACCATACAACTCTGTAT
TGACCACCCACACCACATTGGAACACTCTGACTGTGCATTCATGGTTGAT
AACGAAGCCATCTACGATATCTGCCGACGAAACTTGGATATTGAGCGTCC
AACCTACACTAACTTGAACAGATTGATTGGTCAAATTGTTTCTTCGATCA
CTGCATCTTTGAGATTCGATGGTGCTTTGAATGTCGATTTAACTGAGTTC
CAAACCAACTTGGTGCCATACCCACGTATTCATTTCCCCTTGGCAACTTA
TGCTCCAGTTATCTCTGCTGAGAAAGCCTATCATGAACAACTTACTGTCT
CTGAAATCACCAATGCCTGTTTCGAACCAGCCAACCAGATGGTCAAATGC
GATCCACGACATGGTAAATACATGGCTTGTTGTCTGTTGTACCGTGGAGA
TGTTGTCCCTAAAGACGTCAATGCAGCTATCGCTACCATCAAAACCAAAC
GTACAATTCAATTTGTCGATTGGTGTCCAACTGGATTCAAAGTTGGAATC
AATTACCAACCACCAACCGTTGTTCCAGGAGGTGATCTCGCTAAAGTTCA
ACGTGCTGTTTGTATGTTGTCCAATACCACTGCAATTGCTGAAGCTTGGG
CTCGTTTGGATCATAAATTCGATTTGATGTACGCCAAACGTGCTTTTGTA
CATTGGTATGTCGGAGAAGGTAAGAAAATAAGTTCGGTCATACACTGGAA
TCTCTTTAATTTGAACAAGTTTTCTACTGTATTCCCTTCAAACAATGTCT
CATAAAACTGTCTCTATAACTCGACATTTCCTTAACTATAACAGCGTTAC
GTGCCCCGTGTTACCTGTATTCATTTTGCACAAGCTTTTTTCGCGCATCC
TTAATAAGTGTGAGGTCGAAGGTGGGAGACAAAAAGTTAGGGTTAGTAAA
ACGAAAACAGATATTCTGGTTCCTTGATACTCAAAGAAAAACAAAATGTC
TTTTTTCAGATTTGCTTCCATTTTTGAAGTTGCCAGCTGACCCCGAGTCA
AATTCATTGTTTTGGATTTTAGGTCTTTATGAACGTTCATTTTTGTTAAA
TAAAAAGTTCTTTTTACATGAGTGTTTCCGTTTCATATCAGACACATATT
TTATATCGGGACATTGTCTTGATATTGTTATATTATGCTGATACAAGCAA
AAATATGTTTCTTTTTCTTTTTGACCAATCTTGCTCCACATCCGATGTTA
AAAAGCTTGGGAATTAAAATTGACGAGTAAGCAAATGATATCACTCTTAT
TTGAAAACAAACCTTTAATACAAATTTTCCCATTAATAACACAGGTATGG
AAGAAGGTGAGTTTTCAGAAGCTCGTGAAGACATGGCAGCCTTGGAGAAA
GATTACGAAGAAGTCGGTGTTGATTCTATTGATGACGATGGAGAAGGCGA
AGATGACGAATATTAAGGAGATAATATATATAAGGGAGATAAACACCATT
CTGTAACCATTTTAAAGAATATAAT

Coding sequence (CDS) from alignment at sc0000133:206758..211082-

>TCONS_00011858 ID=TCONS_00011858|Name=TCONS_00011858|organism=Clytia hemisphaerica|type=CDS|length=6780bp|location=Sequence derived from alignment at sc0000133:206758..211082- (Clytia hemisphaerica)
GTATGGAAGAAGGTGAGTTTTCAGAAGCTCGTGAAGACATGGCAGCCTTG
GAGAAAGATTACGAAGAAGTCGGTGTTGATTCTATTGATGACGATGGAGA
AGGCGAAGATGACGAATATTAAATTGGAACACTCTGACTGTGCATTCATG
GTTGATAACGAAGCCATCTACGATATCTGCCGACGAAACTTGGATATTGA
GCGTCCAACCTACACTAACTTGAACAGATTGATTGGTCAAATTGTTTCTT
CGATCACTGCATCTTTGAGATTCGATGGTGCTTTGAATGTCGATTTAACT
GAGTTCCAAACCAACTTGGTGCCATACCCACGTATTCATTTCCCCTTGGC
AACTTATGCTCCAGTTATCTCTGCTGAGAAAGCCTATCATGAACAACTTA
CTGTCTCTGAAATCACCAATGCCTGTTTCGAACCAGCCAACCAGATGGTC
AAATGCGATCCACGACATGGTAAATACATGGCTTGTTGTCTGTTGTACCG
TGGAGATGTTGTCCCTAAAGACGTCAATGCAGCTATCGCTACCATCAAAA
CCAAACGTACAATTCAATTTGTCGATTGGTGTCCAACTGGATTCAAAGTT
GGAATCAATTACCAACCACCAACCGTTGTTCCAGGAGGTGATCTCGCTAA
AGTTCAACGTGCTGTTTGTATGTTGTCCAATACCACTGCAATTGCTGAAG
CTTGGGCTCGTTTGGATCATAAATTCGATTTGATGTACGCCAAACGTGCT
TTTGTACATTGGTATGTCGGAGAAGATGAGGTTCGTACAGGTACATACCG
TCAACTCTTCCATCCTGAACAACTGATCACTGGCAAAGAAGATGCTGCCA
ATAACTACGCTCGTGGTCATTACACTGTTGGTAAAGAACTCATTGACCAA
GTCTTAGATCGTATCCGAAAACTCGCTGATCAATGTACTGGTCTTCAAGG
ATTTTTGATCTTCCACTCTTTCGGTGGTGGTACCGGATCTGGATTCACTT
CATTGTTGATGGAACGTCTTTCCGTCGATTATGGAAAGAAATCTAAATTG
GAATTTGCTGTTTACCCAGCACCCCAAATCTCTACAGCTGTTGTTGAACC
ATACAACTCTGTATTGACCACCCACACCACCGTGAATGTATCTCAGTCCA
TGTTGGCCAAGCTGGCGTCCAAATGGGAAATGCTTGTTGGGAATTGTACT
GTTTGGAGCATGGAATCCAACCTGATGGTCAAATGCCTTCAGACAAAACC
ATCGGAGGTGGAGATGATTCATTCAACACTTTCTTCAGTGAGACTGGTGC
TGGTAAACATGTCCCAAGAGCTGTTTTCATCGATCTTGAACCCTCAGTTG
TTGATGGTATGGAAGAAGGTGAGTTTTCAGAAGCTCGTGAAGACATGGCA
GCCTTGGAGAAAGATTACGAAGAAGTCGGTGTTGATTCTATTGATGACGA
TGGAGAAGGCGAAGATGACGAATATTAAATTGGAACACTCTGACTGTGCA
TTCATGGTTGATAACGAAGCCATCTACGATATCTGCCGACGAAACTTGGA
TATTGAGCGTCCAACCTACACTAACTTGAACAGATTGATTGGTCAAATTG
TTTCTTCGATCACTGCATCTTTGAGATTCGATGGTGCTTTGAATGTCGAT
TTAACTGAGTTCCAAACCAACTTGGTGCCATACCCACGTATTCATTTCCC
CTTGGCAACTTATGCTCCAGTTATCTCTGCTGAGAAAGCCTATCATGAAC
AACTTACTGTCTCTGAAATCACCAATGCCTGTTTCGAACCAGCCAACCAG
ATGGTCAAATGCGATCCACGACATGGTAAATACATGGCTTGTTGTCTGTT
GTACCGTGGAGATGTTGTCCCTAAAGACGTCAATGCAGCTATCGCTACCA
TCAAAACCAAACGTACAATTCAATTTGTCGATTGGTGTCCAACTGGATTC
AAAGTTGGAATCAATTACCAACCACCAACCGTTGTTCCAGGAGGTGATCT
CGCTAAAGTTCAACGTGCTGTTTGTATGTTGTCCAATACCACTGCAATTG
CTGAAGCTTGGGCTCGTTTGGATCATAAATTCGATTTGATGTACGCCAAA
CGTGCTTTTGTACATTGGTATGTCGGAGAAGATGAGGTTCGTACAGGTAC
ATACCGTCAACTCTTCCATCCTGAACAACTGATCACTGGCAAAGAAGATG
CTGCCAATAACTACGCTCGTGGTCATTACACTGTTGGTAAAGAACTCATT
GACCAAGTCTTAGATCGTATCCGAAAACTCGCTGATCAATGTACTGGTCT
TCAAGGATTTTTGATCTTCCACTCTTTCGGTGGTGGTACCGGATCTGGAT
TCACTTCATTGTTGATGGAACGTCTTTCCGTCGATTATGGAAAGAAATCT
AAATTGGAATTTGCTGTTTACCCAGCACCCCAAATCTCTACAGCTGTTGT
TGAACCATACAACTCTGTATTGACCACCCACACCACCGTGAATGTATCTC
AGTCCATGTTGGCCAAGCTGGCGTCCAAATGGGAAATGCTTGTTGGGAAT
TGTACTGTTTGGAGCATGGAATCCAACCTGATGGTCAAATGCCTTCAGAC
AAAACCATCGGAGGTGGAGATGATTCATTCAACACTTTCTTCAGTGAGAC
TGGTGCTGGTAAACATGTCCCAAGAGCTGTTTTCATCGATCTTGAACCCT
CAGTTGTTGATGGTATGGAAGAAGGTGAGTTTTCAGAAGCTCGTGAAGAC
ATGGCAGCCTTGGAGAAAGATTACGAAGAAGTCGGTGTTGATTCTATTGA
TGACGATGGAGAAGGCGAAGATGACGAATATTAAATTGGAACACTCTGAC
TGTGCATTCATGGTTGATAACGAAGCCATCTACGATATCTGCCGACGAAA
CTTGGATATTGAGCGTCCAACCTACACTAACTTGAACAGATTGATTGGTC
AAATTGTTTCTTCGATCACTGCATCTTTGAGATTCGATGGTGCTTTGAAT
GTCGATTTAACTGAGTTCCAAACCAACTTGGTGCCATACCCACGTATTCA
TTTCCCCTTGGCAACTTATGCTCCAGTTATCTCTGCTGAGAAAGCCTATC
ATGAACAACTTACTGTCTCTGAAATCACCAATGCCTGTTTCGAACCAGCC
AACCAGATGGTCAAATGCGATCCACGACATGGTAAATACATGGCTTGTTG
TCTGTTGTACCGTGGAGATGTTGTCCCTAAAGACGTCAATGCAGCTATCG
CTACCATCAAAACCAAACGTACAATTCAATTTGTCGATTGGTGTCCAACT
GGATTCAAAGTTGGAATCAATTACCAACCACCAACCGTTGTTCCAGGAGG
TGATCTCGCTAAAGTTCAACGTGCTGTTTGTATGTTGTCCAATACCACTG
CAATTGCTGAAGCTTGGGCTCGTTTGGATCATAAATTCGATTTGATGTAC
GCCAAACGTGCTTTTGTACATTGGTATGTCGGAGAAGATGAGGTTCGTAC
AGGTACATACCGTCAACTCTTCCATCCTGAACAACTGATCACTGGCAAAG
AAGATGCTGCCAATAACTACGCTCGTGGTCATTACACTGTTGGTAAAGAA
CTCATTGACCAAGTCTTAGATCGTATCCGAAAACTCGCTGATCAATGTAC
TGGTCTTCAAGGATTTTTGATCTTCCACTCTTTCGGTGGTGGTACCGGAT
CTGGATTCACTTCATTGTTGATGGAACGTCTTTCCGTCGATTATGGAAAG
AAATCTAAATTGGAATTTGCTGTTTACCCAGCACCCCAAATCTCTACAGC
TGTTGTTGAACCATACAACTCTGTATTGACCACCCACACCACCGTGAATG
TATCTCAGTCCATGTTGGCCAAGCTGGCGTCCAAATGGGAAATGCTTGTT
GGGAATTGTACTGTTTGGAGCATGGAATCCAACCTGATGGTCAAATGCCT
TCAGACAAAACCATCGGAGGTGGAGATGATTCATTCAACACTTTCTTCAG
TGAGACTGGTGCTGGTAAACATGTCCCAAGAGCTGTTTTCATCGATCTTG
AACCCTCAGTTGTTGATGGTATGGAAGAAGGTGAGTTTTCAGAAGCTCGT
GAAGACATGGCAGCCTTGGAGAAAGATTACGAAGAAGTCGGTGTTGATTC
TATTGATGACGATGGAGAAGGCGAAGATGACGAATATTAAATTGGAACAC
TCTGACTGTGCATTCATGGTTGATAACGAAGCCATCTACGATATCTGCCG
ACGAAACTTGGATATTGAGCGTCCAACCTACACTAACTTGAACAGATTGA
TTGGTCAAATTGTTTCTTCGATCACTGCATCTTTGAGATTCGATGGTGCT
TTGAATGTCGATTTAACTGAGTTCCAAACCAACTTGGTGCCATACCCACG
TATTCATTTCCCCTTGGCAACTTATGCTCCAGTTATCTCTGCTGAGAAAG
CCTATCATGAACAACTTACTGTCTCTGAAATCACCAATGCCTGTTTCGAA
CCAGCCAACCAGATGGTCAAATGCGATCCACGACATGGTAAATACATGGC
TTGTTGTCTGTTGTACCGTGGAGATGTTGTCCCTAAAGACGTCAATGCAG
CTATCGCTACCATCAAAACCAAACGTACAATTCAATTTGTCGATTGGTGT
CCAACTGGATTCAAAGTTGGAATCAATTACCAACCACCAACCGTTGTTCC
AGGAGGTGATCTCGCTAAAGTTCAACGTGCTGTTTGTATGTTGTCCAATA
CCACTGCAATTGCTGAAGCTTGGGCTCGTTTGGATCATAAATTCGATTTG
ATGTACGCCAAACGTGCTTTTGTACATTGGTATGTCGGAGAAGATGAGGT
TCGTACAGGTACATACCGTCAACTCTTCCATCCTGAACAACTGATCACTG
GCAAAGAAGATGCTGCCAATAACTACGCTCGTGGTCATTACACTGTTGGT
AAAGAACTCATTGACCAAGTCTTAGATCGTATCCGAAAACTCGCTGATCA
ATGTACTGGTCTTCAAGGATTTTTGATCTTCCACTCTTTCGGTGGTGGTA
CCGGATCTGGATTCACTTCATTGTTGATGGAACGTCTTTCCGTCGATTAT
GGAAAGAAATCTAAATTGGAATTTGCTGTTTACCCAGCACCCCAAATCTC
TACAGCTGTTGTTGAACCATACAACTCTGTATTGACCACCCACACCACCG
TGAATGTATCTCAGTCCATGTTGGCCAAGCTGGCGTCCAAATGGGAAATG
CTTGTTGGGAATTGTACTGTTTGGAGCATGGAATCCAACCTGATGGTCAA
ATGCCTTCAGACAAAACCATCGGAGGTGGAGATGATTCATTCAACACTTT
CTTCAGTGAGACTGGTGCTGGTAAACATGTCCCAAGAGCTGTTTTCATCG
ATCTTGAACCCTCAGTTGTTGATGGTATGGAAGAAGGTGAGTTTTCAGAA
GCTCGTGAAGACATGGCAGCCTTGGAGAAAGATTACGAAGAAGTCGGTGT
TGATTCTATTGATGACGATGGAGAAGGCGAAGATGACGAATATTAAATTG
GAACACTCTGACTGTGCATTCATGGTTGATAACGAAGCCATCTACGATAT
CTGCCGACGAAACTTGGATATTGAGCGTCCAACCTACACTAACTTGAACA
GATTGATTGGTCAAATTGTTTCTTCGATCACTGCATCTTTGAGATTCGAT
GGTGCTTTGAATGTCGATTTAACTGAGTTCCAAACCAACTTGGTGCCATA
CCCACGTATTCATTTCCCCTTGGCAACTTATGCTCCAGTTATCTCTGCTG
AGAAAGCCTATCATGAACAACTTACTGTCTCTGAAATCACCAATGCCTGT
TTCGAACCAGCCAACCAGATGGTCAAATGCGATCCACGACATGGTAAATA
CATGGCTTGTTGTCTGTTGTACCGTGGAGATGTTGTCCCTAAAGACGTCA
ATGCAGCTATCGCTACCATCAAAACCAAACGTACAATTCAATTTGTCGAT
TGGTGTCCAACTGGATTCAAAGTTGGAATCAATTACCAACCACCAACCGT
TGTTCCAGGAGGTGATCTCGCTAAAGTTCAACGTGCTGTTTGTATGTTGT
CCAATACCACTGCAATTGCTGAAGCTTGGGCTCGTTTGGATCATAAATTC
GATTTGATGTACGCCAAACGTGCTTTTGTACATTGGTATGTCGGAGAAGA
TGAGGTTCGTACAGGTACATACCGTCAACTCTTCCATCCTGAACAACTGA
TCACTGGCAAAGAAGATGCTGCCAATAACTACGCTCGTGGTCATTACACT
GTTGGTAAAGAACTCATTGACCAAGTCTTAGATCGTATCCGAAAACTCGC
TGATCAATGTACTGGTCTTCAAGGATTTTTGATCTTCCACTCTTTCGGTG
GTGGTACCGGATCTGGATTCACTTCATTGTTGATGGAACGTCTTTCCGTC
GATTATGGAAAGAAATCTAAATTGGAATTTGCTGTTTACCCAGCACCCCA
AATCTCTACAGCTGTTGTTGAACCATACAACTCTGTATTGACCACCCACA
CCACCGTGAATGTATCTCAGTCCATGTTGGCCAAGCTGGCGTCCAAATGG
GAAATGCTTGTTGGGAATTGTACTGTTTGGAGCATGGAATCCAACCTGAT
GGTCAAATGCCTTCAGACAAAACCATCGGAGGTGGAGATGATTCATTCAA
CACTTTCTTCAGTGAGACTGGTGCTGGTAAACATGTCCCAAGAGCTGTTT
TCATCGATCTTGAACCCTCAGTTGTTGATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006659XLOC_006659Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011858-exon-sc0000133-1575043694:210809..211082TCONS_00011858-exon-sc0000133-1575043694:210809..211082Clytia hemisphaericaexon
TCONS_00011858-exon-sc0000133-1575043694:210368..210590TCONS_00011858-exon-sc0000133-1575043694:210368..210590Clytia hemisphaericaexon
TCONS_00011858-exon-sc0000133-1575043694:208297..208651TCONS_00011858-exon-sc0000133-1575043694:208297..208651Clytia hemisphaericaexon
TCONS_00011858-exon-sc0000133-1575043694:207564..208216TCONS_00011858-exon-sc0000133-1575043694:207564..208216Clytia hemisphaericaexon
TCONS_00011858-exon-sc0000133-1575043694:206758..206938TCONS_00011858-exon-sc0000133-1575043694:206758..206938Clytia hemisphaericaexon
TCONS_00011858-exon-sc0000133-1510915933:210809..211082TCONS_00011858-exon-sc0000133-1510915933:210809..211082Clytia hemisphaericaexon
TCONS_00011858-exon-sc0000133-1510915933:210368..210590TCONS_00011858-exon-sc0000133-1510915933:210368..210590Clytia hemisphaericaexon
TCONS_00011858-exon-sc0000133-1510915933:208297..208651TCONS_00011858-exon-sc0000133-1510915933:208297..208651Clytia hemisphaericaexon
TCONS_00011858-exon-sc0000133-1510915933:207564..208216TCONS_00011858-exon-sc0000133-1510915933:207564..208216Clytia hemisphaericaexon
TCONS_00011858-exon-sc0000133-1510915933:206758..206938TCONS_00011858-exon-sc0000133-1510915933:206758..206938Clytia hemisphaericaexon
TCONS_00011858-exon-sc0000133-1491911889:210809..211082TCONS_00011858-exon-sc0000133-1491911889:210809..211082Clytia hemisphaericaexon
TCONS_00011858-exon-sc0000133-1491911889:210368..210590TCONS_00011858-exon-sc0000133-1491911889:210368..210590Clytia hemisphaericaexon
TCONS_00011858-exon-sc0000133-1491911889:208297..208651TCONS_00011858-exon-sc0000133-1491911889:208297..208651Clytia hemisphaericaexon
TCONS_00011858-exon-sc0000133-1491911889:207564..208216TCONS_00011858-exon-sc0000133-1491911889:207564..208216Clytia hemisphaericaexon
TCONS_00011858-exon-sc0000133-1491911889:206758..206938TCONS_00011858-exon-sc0000133-1491911889:206758..206938Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011858-proteinTCONS_00011858-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000133supercontigsc0000133:206758..211082 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2862.59	2753.21	3364.31	3265.46	1494.53	1187.56	548.829	606.422	474.277	489.638	539.69	467.806	493.699	535.639	406.479	442.48	1018.84	1047.05	694.976	588.821	641.767	678.823	1533.7	1257.86	1201.56	1007.78	2289.42	2414.15	1243.13	1166.46
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000217Tubulin
IPR002452Alpha_tubulin
IPR018316Tubulin/FtsZ_2-layer-sand-dom
IPR003008Tubulin_FtsZ_GTPase
IPR017975Tubulin_CS
IPR008280Tub_FtsZ_C
Vocabulary: Biological Process
TermDefinition
GO:0007017microtubule-based process
Vocabulary: Cellular Component
TermDefinition
GO:0005874microtubule
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0005200structural constituent of cytoskeleton
GO:0003924GTPase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007017 microtubule-based process
cellular_component GO:0005874 microtubule
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
molecular_function GO:0005200 structural constituent of cytoskeleton
Blast
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BLAST of TCONS_00011858 vs. Swiss-Prot (Human)
Match: TBA1A (Tubulin alpha-1A chain OS=Homo sapiens GN=TUBA1A PE=1 SV=1)

HSP 1 Score: 866.3 bits (2237), Expect = 0.000e+0
Identity = 417/432 (96.53%), Postives = 431/432 (99.77%), Query Frame = 2 
Query:  272 MRECISVHVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFIDLEPSVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTVGKELIDQVLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQISTAVVEPYNSVLTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVSEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDY 1567
            MRECIS+HVGQAGVQ+GNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVF+DLEP+V+DEVRTGTYRQLFHPEQLITGKEDAANNYARGHYT+GKE+ID VLDRIRKLADQCTGLQGFL+FHSFGGGTGSGFTSLLMERLSVDYGKKSKLEF++YPAPQ+STAVVEPYNS+LTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQL+V+EITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDY
Sbjct:    1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDY 432
The following BLAST results are available for this feature:
BLAST of TCONS_00011858 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TBA1A0.000e+096.53Tubulin alpha-1A chain OS=Homo sapiens GN=TUBA1A P... [more]
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