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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011856 ID=TCONS_00011856|Name=TCONS_00011856|organism=Clytia hemisphaerica|type=transcript|length=1220bp CTGAATGAAAGCATAAAATTTTAATATTCAGAATTATTAAGAAAGAAGAT CTTAAGACGGAAAAAGTCTTTGTTATTATAGTTGATATTTTGGATTTACT CAATTTGTTTTCCTGGTGGACAATATAATTAATTGTTGATGGAAGAACGT GAAAATGATGAATTTGCAGATGTTTCAACTACTATTAATGAAATCAACTC GACCTTAAATGAACACTTATTTCTTGACAATTCTCTGCAAGAAAATAAAG gtTCAGTATCCACATTTTTGAAGGACTTGTTATCAAAGCAAGCAGAATCA CATAGGAAAATTCAAGAATTGCAACGATCAATCCAAGACAAGGAATATCA GTCAACCTCAAGTGATATTTTCTCATCAACAAAAACTTTGGACGATCTGA ACTTCCTGGAATCACCTGACGTTTCTTTGGCGCTTTTCATGaatgataat gatgatgatattGATGAAGGATCACAACCAACATCGAATGATGAAGAAGT CATCTCTGGTGGTGAATTGATTGAAGAATCACGCAGTTGTGTATCATCGT CTTGTGGTGATTTCGACGAACTGACAACATTGGGAAGTTATAGAGAGATT CCAAGTCCAATCGAAATAACGCCAAACCGGTCGCATAATGGATTTACGAA ATGAAGTTTTGGAATTGTGAAACATCCTGCATCGTTGTCTTCATACCTGG ATAATGTCAAGTTTTCAGCTCTCTACAGGCTTGTAATATTGTTTGACCAT TTACTGGATGACCACATTCTTGTCTCAAAGCTCTGGTAAAACCTTTCAAG GATTCAAGACGAATCGTCTTtatttcatgatatgcaccactgcaatgtgt TCTTCACATCACGTAACTTTTctcttttgtgtttttttcaaCCTAACCCG CAACAAATCAGCTGAAGTAAAAATTGACGTAAATACCCGGAAGGCATTGC AGGGGTGTATATCTTTAATATGCTCAGACAAACATCAAAACTTATATATC TTTAAGTAAATCAAAGCAACGAAGAACTTTAAACATTAGACGTCATTACG TTTGGTAACCTTTTACCCAGACTCTTTACGcgttaaccctttccgtgcaa ATGTCGAGTATattgcccagtttgagttagaaatcgtcatttttggtcta actcgtagaaATTGGATTATGCTTCATGgtaaagcaaaaagaaaaatcaa aagtgagtctttcctgTGAG Run BLAST on NCBI transcript from alignment at sc0000133:126735..135009- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00011856 ID=TCONS_00011856|Name=TCONS_00011856|organism=Clytia hemisphaerica|type=transcript|length=8275bp|location=Sequence derived from alignment at sc0000133:126735..135009- (Clytia hemisphaerica) CTGAATGAAAGCATAAAATTTTAATATTCAGAATTATTAAGAAAGAAGAT
CTTAAGACGGAAAAAGTCTTTGTTATTATAGTTGATATTTTGGATTTACT
CAATTTGTTTTCCTGGTGGACAATATAATTAATTGTTGATGGAAGAACGT
GAAAATGATGAATTTGCAGATGTTTCAACTACTATTAATGAAATCAACTC
GACCTTAAATGAACACTTATTTCTTGACAATTCTCTGCAAGAAAATAAAG
GTACATACTAACTCTTAAATTGACCCCCATTCACGAATTCACGCAAACCG
CTGGGATGCCCTATATCAATAGTTTTACACTGTATTGTTTATTCTGTTCC
CAGTTTATTTTCCTCTGATTGGGCTCTAGGCCCCCTCTAGGGGGTGGATA
ATTTCGGGGGTAGTGAAAAATCTACAAAATTTGCCTTGCTGAGGGGAGGG
GGGTAAACTTGATCTGCTTAGGGGTAATTTTGCTCTGTTTGAAGGTAATT
TTGATTGTCCATGGGGTCAACTATTGCTTGTCCAGGGGTAAATTTCCAAA
AAATGTTATCCTCCCAGATCCTCCAACCCCCGTATTCAAATTTTTTATGG
AAAAGCCCATTAGGGATCATTATCAAAATTGAAAATAATACTTTTTTACT
TTTCAGGTTCAGTATCCACATTTTTGAAGGACTTGTTATCAAAGCAAGCA
GAATCACATAGGAAAATTCAAGTTTGTTCCTTACTATCTCAGTTAACAAA
ATTATCCATTTCTTGTAAAATTTATCCTGATTTATTCATTGCATTGCTGC
CCTCGTCACCATGGTTTCTGCCTACTTTTCAGTCCCGCCTTAAAATGAAT
TTTGCCCTTAAAGAAAACTCCCTCTTTAAATCGAACAAAAATTATCAGTA
CCCCTTATTAGCAGTTACATCAAAATGCAAAAAAAAATTTTGTTCAACCA
CCTTCACTTCAAGATAGGCCACCATAGAATGAACTTCCTTTTATAGGATG
AGGAGTGCAAAGCTGAAAGCCACATGAATATGCTTCATCTTATAAAAGGA
AGTTCATTCTATGGTGGCCTATCTTGAAGTGAAGGTGGTTGACATGGGCC
CCGTCAGCGGGGGGGGGGGGGGGGATCCCCCCCCCCCCCCCCGCTGACGG
GGCCCATGTCAACCACCTTCACTTCAAGATAGGCCACCATAGAATGAACT
TCCTTTTATAGGATGAGGAGTGCAAAGCTGAAAGCCGCATGAATATGCTT
CATCTTATAAAAGGAAGTTCATTCTATGGGGGCCTATCTTGAAGTGAAGG
TGGTTGACATGGGCCCCGTCAAGGGGGGGGGGGGGTCCATGCCCCCCCCC
ACTTTTTGGTAGACCATGTCATACGTTTTTAAGAGCTACTATTTTAAGCT
GATTTGAGATCAAATCAAACTACAAAAACTATTATTTTCCCCAATTAGAT
ATCGTTTTAAGGTGTTTTGAGGGTGTAAAATGTGAAAAATTTTCTTTGTC
GCCCAACCATGGTGGTTTCCAAAATGTTGGCCCCCTCACTCAAAATGGCT
CGCCGGGGCCCATGTTGAACAAAATGTTTTTGGCATATTGATGTAACTGA
TTAGAATGCCCCCCCCTTAAAATAAAATAAGCAGTCCCCCTTAGATTTTT
TAATCCCCTTCAGCAAGCAATTTTTACAATTTTTAGAGAGAGTGGGAAGA
GAGGATGCAGATTGTGAGCATGAAAACGGGAAAGAAAATATTGGATAAAG
AAAATTATTATCGATAAACCAGATAGTAGGGGGCCAAGCCTGGGTGGGGT
CCCGTGGCATCTTTTTTACGACCTGGCAATTTTTAGTCTATTCCAAAGAA
CAGTATTACATAATACTTTTGAGAGGGAGGACGCAGATTAGGCCTGGGAA
AACTTAAAGTTAAAATAAACGAATATGATTGATACCATCTGATAGATCAT
GAAATTCTGAGTAAAAAAATGTTTTACAACAACTCTCTGACTAAAACACA
CAAAGAAATACAGCCGCTTGAAGTTGAAAAACATACTACGATCAAGACAA
GATTTGACGTCAAATCACAGTAGAGATTGACAGTTAGTTGGTCTCAATTT
TTTTACTCCCCCCTTATTTTAAGGGGGGGGGGCAGAAACCATAATCAAGC
AAACCTGTAAATCTTGGACCGTTTTACCAACCTCTTTAAACGTAGTAATT
TTATTTTGTAACTTTCTTAAAGGAATTGCAACGATCAATCCAAGACAAGG
AATATCAGGTAAGGATGAAAATTTTAGTCACATCTCATAAGGAAATTTCG
AGTGGATTGCAATTTCATATTTAAATTTTCAAAATACCATTACCGAGTGT
CTTTGACACTGACACTTGAAAAGTACAAAAGCACAGAAAATACATTTGAC
CGGAAAAGAAGGCTTTGTGTTGATCCCTTTCTTACCACCCCTTTTTTCTA
CTTAGAGTTTCCAGTCCCCCTACTTCTCGGTTTCTTCGTGAGCTAATCAT
TCTGCCCTTAAAGAAAAGGGGGTCGGACTATGTTTACAATACTTCGTTTC
GTCGTTGAAAAGTTACAATTAAATTGTTACCATCATCCAGTCAACCTCAA
GTGATATTTTCTCATCAACAAAAACTTTGGACGATCTGAACTTCCTGGAA
TCACCTGACGTTTCTTTGGCGCTTTTCATGAATGATAATGATGATGATAT
TGATGAAGGATCACAACCAACATCGAATGATGAAGAAGTCATCTCTGGTG
GTGAATTGATTGAAGAATCACGCAGTTGTGTATCATCGTCTTGTGGTGAT
TTCGACGAACTGACAACATTGGGAAGTTATAGAGAGATTCCAAGTCCAAT
CGAAATAACGCCAAACCGGTCGCGTAAGTTTCGATTTTATTTCGTTCTTT
CTTTCAATGGGTTTTGATTAGGAAAATACGGAGAAACATGTTGGCTTTTT
TTATAAAAGACAAATATGATAATAAAATGATACAAGAAGTGCGTAGTGAA
GTTAAAGTCAAAAAAGGGGAAAGGTTTGTCGATTGGTGGATGAACAGAAT
CTCTTTTTTTCTGCTGGAATGACAAAATTTGAATTTAAGTCGGACTTTTT
TTGTTGCACTATAATAGAGCCATTTTATTGTGGATTTTTGAAATCTGCTT
AATATTTTGCTCAATAATTTGTCAAATCATGTATACTAGTTATTCAAATT
AAGTAAATCTTTGTTTAACTTTTGAAGCAAATCTCTAAGGAGCGTAAGAT
TTAATTAACGCCAATTAAAAAGGCTTGGAGACGCTGTAAAATGTAGGATG
GAAAGTGGCAAAATATTTTTCTTCACTGAAACGTGTGTTATGTTTTATTT
GCTAAATAGATTCGAAATTACTTATTTTTTGCCTTTGTTTTACTTTAGAT
ATTGAAGATAAATTTGTGAAAGATATAACGCCAACACGCACAAAAAGTGA
GATCGACGTTGAACACTTACTCACGAATTCTTTAGAAAACAAATCTCGGC
AAGAAGATATACCGTTATTGGAAAGCACTTTTATTATTAGTCAGTCTGTG
GACTGTCATAATCTTTCCGACAGTGATACGAATCAGACTACCGTTCCGTC
TTTGAAGGATACACAATATACGAACGTTGGTGTTGTCTCTACTCTTGAAA
GTGTCGCCAGTATTTCAAGTGGTATTTATAGGAATATTGGAAGACAAAAC
CCAAAATCACCTTTGGAAACATACAAACCCAACGATTGCAAGCCACCAGT
AAATAACGGTGATGAATTAGGGCTTTGTATTGATATAATGGCTGCACGAA
TCAAGGAATTAGAGCTCGAAAAAGAACGCGTGAAATTGGATGTTATTGTG
GCTTTGCGTAAACAGTTTGAAAAACTTACAAATACGGATCATGAAATACA
CTGTGGTACGCTGGAGAAATTGAACGATAGTGTTTGCGAAGTAGCCGTAC
AGGAAGTGGAGAAGGTGCGTAACCAAGAGCGGGAGAGACGCTCCAAGATA
GAGGAGGATTACCAGAGAAAGGTTGACCAGCTAACTGATGAAGTCCGCGA
CTTACGGGTTGATAAATCGACTCTCTTGGCTGAAGTGAGTGATACAAGAC
GCGGTCAGAGTTTAGTTCAAGAGAAACAAGGGAAACTGGAGCGTTTACAA
AATCGTGTTTCGTATTTGGAGAGTTTGCTGCGAACGGTTGAGAAGGATAA
TGAAAAGATGAAGCAGAATTTAAAAGAGCTTGATTGTGAGAATTCGAAAT
TGTTGGTCGAAAATAAGACGCTGAGGAATGAAGTTGGAGATGTGTCGCAT
CAGTTGGAAGTATCCAGGACTACTGATTCTAAAATGAAAGATTTTTATGA
AAAAGAACGTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCGAACGGTTG
AGAAGGATAATGATAAGATGAAGCAGAATTTAAAAGAGCTTGATTGTGAG
AATTCGAAATTGTTGGTCGAAAATAAGACGCTGAGGAATGAAGTTGGAGA
TGTGTCGCATCAGTTGGAAGTATCCAGGACTACTGATTCTAAAATGAAAG
ATTTTTATGAGAAAGAACGTGAGAAAATGTACGATGAAAACAAACAGGTC
AAAGATGAACTGACAGAACTTGGTAACGAAATGATGGTTCTAAAACAAGA
AAAAGAGAAATTGGTCAACTCTAAAGAGACTGATATAAGTATTATTAAAC
ATTTAGAGGAGAAATTGAAACGGCAAGGTGATTTACTTGATACAATGTCA
GCAGATTCAAGTCGTTATTTTGAACTGAATATGAAGCTTGAAAACAAAAC
TGCTCAATATAAACAGAAGTTAAAAAAGAGTGCATACGGTATTGAGAGCA
CACTAGAGGAAAATAAACGATTGAAAAATGAGAAAGAGAATTTGGAAGGG
GACTTGACAGTTTTACAGAAGAGTTTAAATGAATCGAAGAGACGTGAACA
TGATATGCAGTTCCAGTTCAAGAAATTAAGAGCTGAACTTGAACAAAAAC
AACGCGAACTAACTCTTCATAAAGAACGATTCCATGGGAAAAGCTTGACT
AAATTCTCTAAGAATGGAATGAATGACTCGTATGCTGTTTTAGACCAATG
GAATGATTCGTTAGGTCGAGTGATTACGTCATCAGTTAATTACCACGTGT
TGCCTTGCAATGGATCACGTGTTTTCGAGAAACTCCATTCCGCTTCACCA
TCGAAATTTAGAGATATGAATATTTTACCGAACAGAAATTCATTGATTAT
TGGTAATTCGACTCATGAAGATGGTCTAACATCGATAAAATTCAATAACA
CGGATCAAAAGTTTTTAAATAAATCCAGAGATGTTAAGACAAGTTTAGAC
GAGATTGAAACTGAGAAATCTCGATCAATACGTTTCGAAGATTACCCTAG
AGTTCATACTATCTCAAAAGTTAACGCTTGCGATACAGATGGAGATATAA
ACCGAACTGTATCGACAGACTGCTACCAACAAAATCAAGCAAACCTATCT
CGTCCAATTACTTCAACCAGAACTTACCAACAATCAGATACTACGGGACG
TTTTAAAGACTCGTATAAACAAATTAGCAACAATTCTAGACATTTGGAGA
CCACTTCCAAGCTAGAAGACCCTATAGACCGTATACAAGCAGCCAATAAA
AGCTACGAAACTTATAAAACTAATACAATAGCGATAAATGGGAAAGAGAT
AAAAACGTCACTGGCAAATAATCTTCAGCCAATGAGATTGTTCAGTGATA
GCGAAAGTGGTTTTGAAGGATCGCCTGTCAACGGAGGAGATAGTGTGTAT
CCAGCCAAAAGTTGGCAATCAACGACAAATGTTTCGCCTCCTTCAGAATC
TGGACATCTTGGAAATCTTGAAAAGAAATACCGTGGCCATGATACGAAGT
AAGTAATTTGTTTTTATTGTTGTTCTAGGATAGAGTTTAAGTTTTAAGTA
AATAATGTTTTTTGGTTTGTTTTTTAATATCCAAACCAAAGATATCATAT
CCCTTTACATACCAGATGCCTGCTAACTGCTCACAGATTTCCCGGGTAAG
TGTTCAGTTTTGAAGTCCACCAGTCCAACATGTTGTTTTCTAATTTACCT
TAGATTTTCGAACGTTCGAATTTCAAAATATTCGAATCGCGCTGTCAATG
ACCAGTAAGATTTTAGTGTAGTCAGCTCTAAAACTGGACACGCTTTATTT
CTTTTAAATGGGGATGGAAATTTGGAAGCACGATCCAGTTAAGTAGTTAG
AGATCAGTGCACAATTATATAATGTTTAGCTGTTCTTGAGATATTGATTA
ATTTTTTTTCTTTCTCAGGTTATTTCTACAAGAGATGCAATACAAATTGG
AGCACTCACAAGCCGCCATGAAATTGGCGGACACCGCCCACATCTCGTCT
ACCACTACAAATTTCTTGAATTCAGCCGAAAAGATACACCACAAGGTATA
ATTGTAAATTGATAATATGCGAGTCGCGAGTTACTTTTTATGAGTTACGA
GCTGCACTTTTAAGAAAACAAAATCGCGCAACTGAAAACTGAAAATTGTT
GGATAAGACATCAAAAGCACCAGTTGCAAATTTAAAGTGCGATTTGCGAA
TTAAAAGTGCGAGTTGCGAATTAAAAGTGAGAGTTGCGAATTAAAAGTGC
CAGTTGCGAATTAAAAGTGCGAGCTGCAAATTAAAAGTGCGAGCTGCAAA
TTAAAAGTGCGAGTTGCTAATAGCACACCGCGACGAATCTAAAAAAAGTA
ACAAATCTGCACAAATTTATTCGTTTGTACGGCTTGTAATTCCATTCTCC
TTTGCGTTAATTGCTCTTGCACTCTAATTAATTACAATATCAAAAGAAAG
GTAATAACTTTCATGTTTTTCCAATCATTGTGGGATTGGAACTCGTACAC
ATTTCTAGTTAAAATAATTATGACGTGTGTAATGCGGAGCGCTATTAAAA
GTGCGAGCTGCAAATTAAAAGTGCGAGTTGCAAATTTAAACAGTTTGGTT
GTCCTGATAAACCCGAGGTCCTTTTAAAGCTAACTTTAAAAAAAAACTAC
AATACACCAGCAAAATAACGGACCTTCTCTTTGTAAGCTGAAAAAATTCT
TAAAAATTAACAAGCGAGGAACGCAAATATATAATCGAGTTACGGAAATT
TCGAGATATGGAGTAAGGTTTATAAGGCATTGAAAACTGAAGGGGCGAGA
AAACTTTTGTCCGAATTAAGGAAACGAGAGAATTACAAGTTACACTCCAA
TGTACCAATTTAAAAGGCCAGTTTTTATTCTTTTTTTACAAGAAAGTGAT
ACCAACGCCAGTCAGCGCTGGATTTTGTTTCTGGGTCTTGTGAGGTCGAG
CTGATGTGTAAATTAGAACCTTTTCATAAAGATGTCCAGAGTATTTCCTA
GTTTAGTAGTTATCTTGTCTCTTGCTGTTTCTTTCTAGCCGATAGCCAAT
TGGGCTCTTATTGGCTTGTTTGAATATCGGCCGGCCATCTTTTTTCAATA
ATGCTAACTAATTAATGATTTGAACATACCGTAGCTTTTACTACTGTACC
TTTTACTACTGTAGCTTTTACTTATTTTATTCTTTGAAAATAAACTTATT
TTCAACCAGTTTCAACGATTCTTGTTTTCAATTCTACAGATAATGGATTT
ACGAAATGAAGTTTTGGAATTGTGAAACATCCTGCATCGTTGTCTTCATA
CCTGGATAATGTCAAGTTTTCAGCTCTCTACAGGCTTGTAATATTGTTTG
ACCATTTACTGGATGACCACATTCTTGTCTCAAAGCTCTGGTAAAACCTT
TCAAGGATTCAAGACGAATCGTCTTTATTTCATGATATGCACCACTGCAA
TGTGTTCTTCACATCACGTAACTTTTCTCTTTTGTGTTTTTTTCAACCTA
ACCCGCAACAAATCAGCTGAAGTAAAAATTGACGTAAATACCCGGAAGGC
ATTGCAGGGGTGTATATCTTTAATATGCTCAGACAAACATCAAAACTTAT
ATATCTTTAAGTAAATCAAAGCAACGAAGAACTTTAAACATTAGACGTCA
TTACGTTTGGTAACCTTTTACCCAGACTCTTTACGCGTTAACCCTTTCCG
TGCAAATGTCGAGTATATTGCCCAGTTTGAGTTAGAAATCGTCATTTTTG
GTCTAACTCGTAGAAATTGGATTATGCTTCATGGTAAAGCAAAAAGAAAA
ATCAAAAGTGAGTCTTTCCTGTGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00011856-exon-sc0000133-1575043694:134760..135009 | TCONS_00011856-exon-sc0000133-1575043694:134760..135009 | Clytia hemisphaerica | exon |
TCONS_00011856-exon-sc0000133-1575043694:134289..134353 | TCONS_00011856-exon-sc0000133-1575043694:134289..134353 | Clytia hemisphaerica | exon |
TCONS_00011856-exon-sc0000133-1575043694:132752..132787 | TCONS_00011856-exon-sc0000133-1575043694:132752..132787 | Clytia hemisphaerica | exon |
TCONS_00011856-exon-sc0000133-1575043694:132137..132419 | TCONS_00011856-exon-sc0000133-1575043694:132137..132419 | Clytia hemisphaerica | exon |
TCONS_00011856-exon-sc0000133-1575043694:126735..127320 | TCONS_00011856-exon-sc0000133-1575043694:126735..127320 | Clytia hemisphaerica | exon |
TCONS_00011856-exon-sc0000133-1510915933:134760..135009 | TCONS_00011856-exon-sc0000133-1510915933:134760..135009 | Clytia hemisphaerica | exon |
TCONS_00011856-exon-sc0000133-1510915933:134289..134353 | TCONS_00011856-exon-sc0000133-1510915933:134289..134353 | Clytia hemisphaerica | exon |
TCONS_00011856-exon-sc0000133-1510915933:132752..132787 | TCONS_00011856-exon-sc0000133-1510915933:132752..132787 | Clytia hemisphaerica | exon |
TCONS_00011856-exon-sc0000133-1510915933:132137..132419 | TCONS_00011856-exon-sc0000133-1510915933:132137..132419 | Clytia hemisphaerica | exon |
TCONS_00011856-exon-sc0000133-1510915933:126735..127320 | TCONS_00011856-exon-sc0000133-1510915933:126735..127320 | Clytia hemisphaerica | exon |
TCONS_00011856-exon-sc0000133-1491911889:134760..135009 | TCONS_00011856-exon-sc0000133-1491911889:134760..135009 | Clytia hemisphaerica | exon |
TCONS_00011856-exon-sc0000133-1491911889:134289..134353 | TCONS_00011856-exon-sc0000133-1491911889:134289..134353 | Clytia hemisphaerica | exon |
TCONS_00011856-exon-sc0000133-1491911889:132752..132787 | TCONS_00011856-exon-sc0000133-1491911889:132752..132787 | Clytia hemisphaerica | exon |
TCONS_00011856-exon-sc0000133-1491911889:132137..132419 | TCONS_00011856-exon-sc0000133-1491911889:132137..132419 | Clytia hemisphaerica | exon |
TCONS_00011856-exon-sc0000133-1491911889:126735..127320 | TCONS_00011856-exon-sc0000133-1491911889:126735..127320 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000133 | supercontig | sc0000133:126735..135009 - |
Blast
The following BLAST results are available for this feature:
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