TCONS_00011855 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011855
Unique NameTCONS_00011855
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2222

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011855 ID=TCONS_00011855|Name=TCONS_00011855|organism=Clytia hemisphaerica|type=transcript|length=2222bp
GCGAACGGTTGAGAAGGATAATGATAAGATGAAGCAGAATTTAAAAGAGC
TTGATTGTGAGAATTCGAAATTGTTGGTCGAAAATAAGACGCTGAGGAAT
GAAGTTGGAGATGTGTCGCATCAGTTGGAAGTATCCAGGACTACTGAttc
taaaatgaaagatttttatGAGAAAGAACGTGAGAAAATGTACGATGAAA
ACAAACAGGTCAAAGATGAACTGACAGAACTTGGTAACGAAATGATGGtt
ctaaaacaagaaaaagagaaattggTCAACTCTAAAGAGACTGATATAAG
TATTATTAAACATTTAGAGGAGAAATTGAAACGGCAAGGTGATTTACTTG
ATACAATGTCAGCAGATTCAAGTCGTTATTTTGAACTGAATATGAAGCTT
GAAAACAAAACTGCTCAATATAAACAGAAGTTAAAAAAGAGTGCATACGG
TATTGAGAGCACACTAGAGGAAAATAAACgattgaaaaatgagaaagagA
ATTTGGAAGGGGACTTGACAGTTTTACAGAAGAGTTTAAATGAATCGAAG
AGACGTGAACATGATATGCAGTTCCAGTTCAAGAAATTAAGAGCTGAACT
TGAACAAAAACAACGCGAACTAACTCTTCATAAAGAACGATTCCATGGGA
AAAGCTTGACTAAATTCTCTAAGAATGGAATGAATGACTCGTATGCTGTT
TTAGACCAATGGAATGATTCGTTAGGTCGAGTGATTACGTCATCAGTTAA
TTACCACGTGTTGCCTTGCAATGGATCACGTGTTTTCGAGAAACTCCATT
CCGCTTCACCATCGAAATTTAGAGATATGAATATTTTACCGAACAGAAAT
TCATTGATTATTGGTAATTCGACTCATGAAGATGGTCTAACATCGATAAA
ATTCAATAACACGGatcaaaagtttttaaataaatccaGAGATGTTAAGA
CAAGTTTAGACGAGATTGAAACTGAGAAATCTCGATCAATACGTTTCGAA
GATTACCCTAGAGTTCATACTATCTCAAAAGTTAACGCTTGCGATACAGA
TGGAGATATAAACCGAACTGTATCGACAGACTGCTACCAACAAAATCAAG
CAAACCTATCTCGTCCAATTACTTCAACCAGAACTTACCAACAATCAGAT
ACTACGGGACGTTTTAAAGACTCGTATAAACAAATTAGCAACAATTCTAG
ACATTTGGAGACCACTTCCAAGCTAGAAGACCCTATAGACCGTATACAAG
CAGCCAATAAAAGCTACGAAACTTATAAAACTAATACAATAGCGATAAAT
GGGAAAGAGATAAAAACGTCACTGGCAAATAATCTTCAGCCAATGAGATT
GTTCAGTGATAGCGAAAGTGGTTTTGAAGGATCGCCTGTCAACGGAGGAG
ATAGTGTGTATCCAGCCAAAAGTTGGCAATCAACGACAAATGTTTCGCCT
CCTTCAGAATCTGGACATCTtggaaatcttgaaaagaaataccgTGGCCA
TGATACGAAgTTATTTCTACAAGAGATGCAATACAAATTGGAGCACTCAC
AAGCCGCCATGAAATTGGCGGACACCGCCCACATCTCGTCTACCACTACA
AATTTCTTGAATTCAGCCGAAAAGATACACCACAAGATAATGGATTTACG
AAATGAAGTTTTGGAATTGTGAAACATCCTGCATCGTTGTCTTCATACCT
GGATAATGTCAAGTTTTCAGCTCTCTACAGGCTTGTAATATTGTTTGACC
ATTTACTGGATGACCACATTCTTGTCTCAAAGCTCTGGTAAAACCTTTCA
AGGATTCAAGACGAATCGTCTTtatttcatgatatgcaccactgcaatgt
gtTCTTCACATCACGTAACTTTTctcttttgtgtttttttcaaCCTAACC
CGCAACAAATCAGCTGAAGTAAAAATTGACGTAAATACCCGGAAGGCATT
GCAGGGGTGTATATCTTTAATATGCTCAGACAAACATCAAAACTTATATA
TCTTTAAGTAAATCAAAGCAACGAAGAACTTTAAACATTAGACGTCATTA
CGTTTGGTAACCTTTTACCCAGACTCTTTACGcgttaaccctttccgtgc
aaATGTCGAGTATattgcccagtttgagttagaaatcgtcatttttggtc
taactcgtagaaATTGGATTATGCTTCATGgtaaagcaaaaagaaaaatc
aaaagtgagtctttcctgTGAG
Run BLAST on NCBI

transcript from alignment at sc0000133:126735..130570-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011855 ID=TCONS_00011855|Name=TCONS_00011855|organism=Clytia hemisphaerica|type=transcript|length=3836bp|location=Sequence derived from alignment at sc0000133:126735..130570- (Clytia hemisphaerica)
GCGAACGGTTGAGAAGGATAATGATAAGATGAAGCAGAATTTAAAAGAGC
TTGATTGTGAGAATTCGAAATTGTTGGTCGAAAATAAGACGCTGAGGAAT
GAAGTTGGAGATGTGTCGCATCAGTTGGAAGTATCCAGGACTACTGATTC
TAAAATGAAAGATTTTTATGAGAAAGAACGTGAGAAAATGTACGATGAAA
ACAAACAGGTCAAAGATGAACTGACAGAACTTGGTAACGAAATGATGGTT
CTAAAACAAGAAAAAGAGAAATTGGTCAACTCTAAAGAGACTGATATAAG
TATTATTAAACATTTAGAGGAGAAATTGAAACGGCAAGGTGATTTACTTG
ATACAATGTCAGCAGATTCAAGTCGTTATTTTGAACTGAATATGAAGCTT
GAAAACAAAACTGCTCAATATAAACAGAAGTTAAAAAAGAGTGCATACGG
TATTGAGAGCACACTAGAGGAAAATAAACGATTGAAAAATGAGAAAGAGA
ATTTGGAAGGGGACTTGACAGTTTTACAGAAGAGTTTAAATGAATCGAAG
AGACGTGAACATGATATGCAGTTCCAGTTCAAGAAATTAAGAGCTGAACT
TGAACAAAAACAACGCGAACTAACTCTTCATAAAGAACGATTCCATGGGA
AAAGCTTGACTAAATTCTCTAAGAATGGAATGAATGACTCGTATGCTGTT
TTAGACCAATGGAATGATTCGTTAGGTCGAGTGATTACGTCATCAGTTAA
TTACCACGTGTTGCCTTGCAATGGATCACGTGTTTTCGAGAAACTCCATT
CCGCTTCACCATCGAAATTTAGAGATATGAATATTTTACCGAACAGAAAT
TCATTGATTATTGGTAATTCGACTCATGAAGATGGTCTAACATCGATAAA
ATTCAATAACACGGATCAAAAGTTTTTAAATAAATCCAGAGATGTTAAGA
CAAGTTTAGACGAGATTGAAACTGAGAAATCTCGATCAATACGTTTCGAA
GATTACCCTAGAGTTCATACTATCTCAAAAGTTAACGCTTGCGATACAGA
TGGAGATATAAACCGAACTGTATCGACAGACTGCTACCAACAAAATCAAG
CAAACCTATCTCGTCCAATTACTTCAACCAGAACTTACCAACAATCAGAT
ACTACGGGACGTTTTAAAGACTCGTATAAACAAATTAGCAACAATTCTAG
ACATTTGGAGACCACTTCCAAGCTAGAAGACCCTATAGACCGTATACAAG
CAGCCAATAAAAGCTACGAAACTTATAAAACTAATACAATAGCGATAAAT
GGGAAAGAGATAAAAACGTCACTGGCAAATAATCTTCAGCCAATGAGATT
GTTCAGTGATAGCGAAAGTGGTTTTGAAGGATCGCCTGTCAACGGAGGAG
ATAGTGTGTATCCAGCCAAAAGTTGGCAATCAACGACAAATGTTTCGCCT
CCTTCAGAATCTGGACATCTTGGAAATCTTGAAAAGAAATACCGTGGCCA
TGATACGAAGTAAGTAATTTGTTTTTATTGTTGTTCTAGGATAGAGTTTA
AGTTTTAAGTAAATAATGTTTTTTGGTTTGTTTTTTAATATCCAAACCAA
AGATATCATATCCCTTTACATACCAGATGCCTGCTAACTGCTCACAGATT
TCCCGGGTAAGTGTTCAGTTTTGAAGTCCACCAGTCCAACATGTTGTTTT
CTAATTTACCTTAGATTTTCGAACGTTCGAATTTCAAAATATTCGAATCG
CGCTGTCAATGACCAGTAAGATTTTAGTGTAGTCAGCTCTAAAACTGGAC
ACGCTTTATTTCTTTTAAATGGGGATGGAAATTTGGAAGCACGATCCAGT
TAAGTAGTTAGAGATCAGTGCACAATTATATAATGTTTAGCTGTTCTTGA
GATATTGATTAATTTTTTTTCTTTCTCAGGTTATTTCTACAAGAGATGCA
ATACAAATTGGAGCACTCACAAGCCGCCATGAAATTGGCGGACACCGCCC
ACATCTCGTCTACCACTACAAATTTCTTGAATTCAGCCGAAAAGATACAC
CACAAGGTATAATTGTAAATTGATAATATGCGAGTCGCGAGTTACTTTTT
ATGAGTTACGAGCTGCACTTTTAAGAAAACAAAATCGCGCAACTGAAAAC
TGAAAATTGTTGGATAAGACATCAAAAGCACCAGTTGCAAATTTAAAGTG
CGATTTGCGAATTAAAAGTGCGAGTTGCGAATTAAAAGTGAGAGTTGCGA
ATTAAAAGTGCCAGTTGCGAATTAAAAGTGCGAGCTGCAAATTAAAAGTG
CGAGCTGCAAATTAAAAGTGCGAGTTGCTAATAGCACACCGCGACGAATC
TAAAAAAAGTAACAAATCTGCACAAATTTATTCGTTTGTACGGCTTGTAA
TTCCATTCTCCTTTGCGTTAATTGCTCTTGCACTCTAATTAATTACAATA
TCAAAAGAAAGGTAATAACTTTCATGTTTTTCCAATCATTGTGGGATTGG
AACTCGTACACATTTCTAGTTAAAATAATTATGACGTGTGTAATGCGGAG
CGCTATTAAAAGTGCGAGCTGCAAATTAAAAGTGCGAGTTGCAAATTTAA
ACAGTTTGGTTGTCCTGATAAACCCGAGGTCCTTTTAAAGCTAACTTTAA
AAAAAAACTACAATACACCAGCAAAATAACGGACCTTCTCTTTGTAAGCT
GAAAAAATTCTTAAAAATTAACAAGCGAGGAACGCAAATATATAATCGAG
TTACGGAAATTTCGAGATATGGAGTAAGGTTTATAAGGCATTGAAAACTG
AAGGGGCGAGAAAACTTTTGTCCGAATTAAGGAAACGAGAGAATTACAAG
TTACACTCCAATGTACCAATTTAAAAGGCCAGTTTTTATTCTTTTTTTAC
AAGAAAGTGATACCAACGCCAGTCAGCGCTGGATTTTGTTTCTGGGTCTT
GTGAGGTCGAGCTGATGTGTAAATTAGAACCTTTTCATAAAGATGTCCAG
AGTATTTCCTAGTTTAGTAGTTATCTTGTCTCTTGCTGTTTCTTTCTAGC
CGATAGCCAATTGGGCTCTTATTGGCTTGTTTGAATATCGGCCGGCCATC
TTTTTTCAATAATGCTAACTAATTAATGATTTGAACATACCGTAGCTTTT
ACTACTGTACCTTTTACTACTGTAGCTTTTACTTATTTTATTCTTTGAAA
ATAAACTTATTTTCAACCAGTTTCAACGATTCTTGTTTTCAATTCTACAG
ATAATGGATTTACGAAATGAAGTTTTGGAATTGTGAAACATCCTGCATCG
TTGTCTTCATACCTGGATAATGTCAAGTTTTCAGCTCTCTACAGGCTTGT
AATATTGTTTGACCATTTACTGGATGACCACATTCTTGTCTCAAAGCTCT
GGTAAAACCTTTCAAGGATTCAAGACGAATCGTCTTTATTTCATGATATG
CACCACTGCAATGTGTTCTTCACATCACGTAACTTTTCTCTTTTGTGTTT
TTTTCAACCTAACCCGCAACAAATCAGCTGAAGTAAAAATTGACGTAAAT
ACCCGGAAGGCATTGCAGGGGTGTATATCTTTAATATGCTCAGACAAACA
TCAAAACTTATATATCTTTAAGTAAATCAAAGCAACGAAGAACTTTAAAC
ATTAGACGTCATTACGTTTGGTAACCTTTTACCCAGACTCTTTACGCGTT
AACCCTTTCCGTGCAAATGTCGAGTATATTGCCCAGTTTGAGTTAGAAAT
CGTCATTTTTGGTCTAACTCGTAGAAATTGGATTATGCTTCATGGTAAAG
CAAAAAGAAAAATCAAAAGTGAGTCTTTCCTGTGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006658XLOC_006658Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011855-exon-sc0000133-1575043694:129062..130570TCONS_00011855-exon-sc0000133-1575043694:129062..130570Clytia hemisphaericaexon
TCONS_00011855-exon-sc0000133-1575043694:128515..128641TCONS_00011855-exon-sc0000133-1575043694:128515..128641Clytia hemisphaericaexon
TCONS_00011855-exon-sc0000133-1575043694:126735..127320TCONS_00011855-exon-sc0000133-1575043694:126735..127320Clytia hemisphaericaexon
TCONS_00011855-exon-sc0000133-1510915933:129062..130570TCONS_00011855-exon-sc0000133-1510915933:129062..130570Clytia hemisphaericaexon
TCONS_00011855-exon-sc0000133-1510915933:128515..128641TCONS_00011855-exon-sc0000133-1510915933:128515..128641Clytia hemisphaericaexon
TCONS_00011855-exon-sc0000133-1510915933:126735..127320TCONS_00011855-exon-sc0000133-1510915933:126735..127320Clytia hemisphaericaexon
TCONS_00011855-exon-sc0000133-1491911889:129062..130570TCONS_00011855-exon-sc0000133-1491911889:129062..130570Clytia hemisphaericaexon
TCONS_00011855-exon-sc0000133-1491911889:128515..128641TCONS_00011855-exon-sc0000133-1491911889:128515..128641Clytia hemisphaericaexon
TCONS_00011855-exon-sc0000133-1491911889:126735..127320TCONS_00011855-exon-sc0000133-1491911889:126735..127320Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000133supercontigsc0000133:126735..130570 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.99599	3.13895	2.09118	0.829224	28.9415	22.0995	18.9215	20.1694	7.3146	7.98395	6.76262	5.47903	3.14105	3.95006	4.30779	5.00213	4.48652	6.24711	2.32314	2.1634	2.78205	2.69663	2.58658	3.3106	5.44862	6.31668	1.42582	0.564688	1.51574	1.6979
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00011855 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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