|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011843 ID=TCONS_00011843|Name=TCONS_00011843|organism=Clytia hemisphaerica|type=transcript|length=432bp
ACGAGCAGTTGAGAACTCTGGTTAATGATGTTGTTGAAAAAGACTTTGGC
CCACAAATCATGAAAAGCACCAAGGACACAGTGAAAGCTGCTTCTGGACA
ATCTGCTGAGAATCGTCGACCAATCTGGCTAAGCTCAAAAAGAAACTCGA
AAAGAAGAGAGCCAACGACAACATTGTACTCAAGAAAACCGGCCATCAAG
ATCAATTTGCTCATAACACAGCAGTCTTGGAAACGATTGAGGATACCCTC
GAATTCATGGAAGAGACGGATGTTGATGGGACGAAAGAAGCTTTGAATAA
AGATTTATTACATCACGATCAACGTTACGTGTGGTGTGTTTTATGTGTCA
ATGCCTCTGTGCAAACACGTCTTTCACGTCAATGTCTCTGTACAAACGCA
TTTGAGGAGTTCTTTCTCCATCTTGAAGCCCT Run BLAST on NCBI transcript from alignment at sc0000133:559634..560910+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00011843 ID=TCONS_00011843|Name=TCONS_00011843|organism=Clytia hemisphaerica|type=transcript|length=1277bp|location=Sequence derived from alignment at sc0000133:559634..560910+ (Clytia hemisphaerica)
ACGAGCAGTTGAGAACTCTGGTTAATGATGTTGTTGAAAAAGACTTTGGC
CCACAAATCATGAAAAGCACCAAGGACACAGTGAAAGCTGCTTCTGGACA
ATCTGCTGAGAATCGTCGACCAATCTGGCTAAGCTCAAAAAGAAACTCGA
AAAGAAGAGAGCCAACGACAACATTGTACTCAAGAAAACCGGCCATCAAG
ATCAATTTGCTCATAACACAGCAGTCTTGGAAACGATTGAGGATACCCTC
GAATTCATGGAAGAGACGGATGTTGATGGGACGAAAGAAGCTTTGAATAA
AGGTAAgagattatttatttattagagACTCGTATACAACATATTAGAAT
CGCCGTCACACATGGGTGGCTTACTGTTAACGAACTTAAGGCAAGCGATC
TTACATCTGGAGACGTGGAGGAAAATAGGCTTAAGAGGGCTATTAAAAAT
GCAGAGCAAGTTAAACAAcgtatttataaaaaaaacaagaatagACGAAC
CTGATGGAGAATACTCCAAGGCAATCAAATCTAGAACTGAACAAAGGAGC
AGTATGGAGGAGGTGGTTTGTTATTCATGCAATGAATGAAAGAGTATGGC
ACTACGTCAGCCACTGTcctttttctgaattttcttcaCCTTTGGCCTAC
TCGACAAAATTAATGTCCTCATCAACAGCAACTAAAAGTTCGTCGTCCAA
TTCAAGTTCTAAATTGTCAAGGGATGGAAAGTAActttaacaaaaaatat
ataagatTTTCAGACATTCAGAACaagttttcaacttttgaaatacagta
gCTATTTTACGTTGCGttagttttaaaatttgattACAATTGTTGTAATT
TGTTGTAATTAGATTAGTATTAATGAGAGCTCATGATATAAATGTACCTG
ATCTTCTATTCTATTTCAACTATTTCAACTGTGCCATTTTACCTTCTTAA
ATAATAAATGTCAAAATTAGACGATGCAACAAATTATCAAAACTTCTCTC
CTTTGTGAGAATGCTTTTAGCACTTGACCCTTATTATATCAATTATTCTA
ACACAAAATGTATAATTGACAAATTTGCAGGCTTCTATTATGTAGCatca
tttttctttccttttatgTTGACACGCTTGGTGACTACATTTGCAAGATT
TATTACATCACGATCAACGTTACGTGTGGTGTGTTTTATGTGTCAATGCC
TCTGTGCAAACACGTCTTTCACGTCAATGTCTCTGTACAAACGCATTTGA
GGAGTTCTTTCTCCATCTTGAAGCCCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00011843-exon-sc0000133-1491911889:559634..559935 | TCONS_00011843-exon-sc0000133-1491911889:559634..559935 | Clytia hemisphaerica | exon |
| TCONS_00011843-exon-sc0000133-1510915933:559634..559935 | TCONS_00011843-exon-sc0000133-1510915933:559634..559935 | Clytia hemisphaerica | exon |
| TCONS_00011843-exon-sc0000133-1575043694:559634..559935 | TCONS_00011843-exon-sc0000133-1575043694:559634..559935 | Clytia hemisphaerica | exon |
| TCONS_00011843-exon-sc0000133-1491911889:560781..560910 | TCONS_00011843-exon-sc0000133-1491911889:560781..560910 | Clytia hemisphaerica | exon |
| TCONS_00011843-exon-sc0000133-1510915933:560781..560910 | TCONS_00011843-exon-sc0000133-1510915933:560781..560910 | Clytia hemisphaerica | exon |
| TCONS_00011843-exon-sc0000133-1575043694:560781..560910 | TCONS_00011843-exon-sc0000133-1575043694:560781..560910 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000133 | supercontig | sc0000133:559634..560910 + |
Blast
The following BLAST results are available for this feature:
|
