TCONS_00011842 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011842
Unique NameTCONS_00011842
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length550

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011842 ID=TCONS_00011842|Name=TCONS_00011842|organism=Clytia hemisphaerica|type=transcript|length=550bp
ACGAGCAGTTGAGAACTCTGGTTAATGATGTTGTTGAAAAAGACTTTGGC
CCACAAATCATGAAAAGCACCAAGGACACAGTGAAAGCTGCTTCTGGACA
ATCTGCTGAGAATCGTCGACCAATCTGGCTAAGCTCAAAAAGAAACTCGA
AAAGAAGAGAGCCAACGACAACATTGTACTCAAGAAAACCGGCCATCAAG
ATCAATTTGCTCATAACACAGCAGTCTTGGAAACGATTGAGGATACCCTC
GAATTCATGGAAGAGACGGATGTTGATGGGACGAAAGAAGCTTTGAATAA
AGGTAAgagattatttatttattagagACTCGTATACAACATATTAGAAT
CGCCGTCACACATGGGTGGCTTACTGTTAACGAACTTAAGGCAAGCGATC
TTACATCTGGAGACGTGGAGGAAAATAGGCTTAAGAGGGCTATTAAAAAT
GCAGAGCAAGTTAAACAAcgtatttataaaaaaaacaagaatagACGAAC
CTGATGGAGAATACTCCAAGGCAATCAAATCTAGAACTGAACAAAGGAGC
Run BLAST on NCBI

transcript from alignment at sc0000133:559634..560183+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011842 ID=TCONS_00011842|Name=TCONS_00011842|organism=Clytia hemisphaerica|type=transcript|length=550bp|location=Sequence derived from alignment at sc0000133:559634..560183+ (Clytia hemisphaerica)
ACGAGCAGTTGAGAACTCTGGTTAATGATGTTGTTGAAAAAGACTTTGGC
CCACAAATCATGAAAAGCACCAAGGACACAGTGAAAGCTGCTTCTGGACA
ATCTGCTGAGAATCGTCGACCAATCTGGCTAAGCTCAAAAAGAAACTCGA
AAAGAAGAGAGCCAACGACAACATTGTACTCAAGAAAACCGGCCATCAAG
ATCAATTTGCTCATAACACAGCAGTCTTGGAAACGATTGAGGATACCCTC
GAATTCATGGAAGAGACGGATGTTGATGGGACGAAAGAAGCTTTGAATAA
AGGTAAgagattatttatttattagagACTCGTATACAACATATTAGAAT
CGCCGTCACACATGGGTGGCTTACTGTTAACGAACTTAAGGCAAGCGATC
TTACATCTGGAGACGTGGAGGAAAATAGGCTTAAGAGGGCTATTAAAAAT
GCAGAGCAAGTTAAACAAcgtatttataaaaaaaacaagaatagACGAAC
CTGATGGAGAATACTCCAAGGCAATCAAATCTAGAACTGAACAAAGGAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006654XLOC_006654Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011842-exon-sc0000133-1491911889:559634..560183TCONS_00011842-exon-sc0000133-1491911889:559634..560183Clytia hemisphaericaexon
TCONS_00011842-exon-sc0000133-1510915933:559634..560183TCONS_00011842-exon-sc0000133-1510915933:559634..560183Clytia hemisphaericaexon
TCONS_00011842-exon-sc0000133-1575043694:559634..560183TCONS_00011842-exon-sc0000133-1575043694:559634..560183Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000133supercontigsc0000133:559634..560183 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.22557	1.77386	0.778413	0.848287	0.405455	1.22473	0.543685	0.508105	0.256211	0.391785	0.609215	0.237439	0	0.735332	0.170724	0.183213	0	0.705215	0	1.33778	0	0.749822	2.87868	5.36718	0	0	19.2239	14.502	3.40172	4.31361
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00011842 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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