TCONS_00011823 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011823
Unique NameTCONS_00011823
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length374

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011823 ID=TCONS_00011823|Name=TCONS_00011823|organism=Clytia hemisphaerica|type=transcript|length=374bp
TGGATGGATATTCTTCAGAACAAGTAAATAACTTTTATAACAAAGCTCCC
TCACACTGATTCCTTGATATCTAAAAGCGGATTAGTTTGTtctaaaagtt
tgaaataaCTCCAAAAACTTTCTGCATAATACTGGGCCTAAAAGGTTTTA
TTTACTGTTAtcagaacttttttttttggaagttAAACTGCTAGTCTTTA
ATTTAAACGATTTTTCAACACATTATCCATCAAATTTGATTCTCTCACTT
CTAAGTGCTATGTTTATTTTAACGGGAAACATCGATATTTTTAAAACCTT
AGATTCAAATCCACAGTCCACATTGCAATGGTCAAGAAAATGCTCAACGA
AGACGCCTTGAGAAGAGTTTTACA
Run BLAST on NCBI

transcript from alignment at sc0000132:563018..563391

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011823 ID=TCONS_00011823|Name=TCONS_00011823|organism=Clytia hemisphaerica|type=transcript|length=374bp|location=Sequence derived from alignment at sc0000132:563018..563391 (Clytia hemisphaerica)
TGTAAAACTCTTCTCAAGGCGTCTTCGTTGAGCATTTTCTTGACCATTGC
AATGTGGACTGTGGATTTGAATCTAAGGTTTTAAAAATATCGATGTTTCC
CGTTAAAATAAACATAGCACTTAGAAGTGAGAGAATCAAATTTGATGGAT
AATGTGTTGAAAAATCGTTTAAATTAAAGACTAGCAGTTTaacttccaaa
aaaaaaagttctgaTAACAGTAAATAAAACCTTTTAGGCCCAGTATTATG
CAGAAAGTTTTTGGAGttatttcaaacttttagaACAAACTAATCCGCTT
TTAGATATCAAGGAATCAGTGTGAGGGAGCTTTGTTATAAAAGTTATTTA
CTTGTTCTGAAGAATATCCATCCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006641XLOC_006641Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011823-exon-sc0000132-1491911889:563018..563391TCONS_00011823-exon-sc0000132-1491911889:563018..563391Clytia hemisphaericaexon
TCONS_00011823-exon-sc0000132-1510915933:563018..563391TCONS_00011823-exon-sc0000132-1510915933:563018..563391Clytia hemisphaericaexon
TCONS_00011823-exon-sc0000132-1575043694:563018..563391TCONS_00011823-exon-sc0000132-1575043694:563018..563391Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000132supercontigsc0000132:563018..563391 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.64505	1.25805	0	0	0.289962	0.229132	1.10575	0.517595	0.18119	0.448867	0	1.1456	0.143001	0.148508	0.366281	0.131025	0	0.165442	0	0	0.20789	0	0.246534	0	0.230854	0.412063	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00011823 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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