TCONS_00011819 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011819
Unique NameTCONS_00011819
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length471

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011819 ID=TCONS_00011819|Name=TCONS_00011819|organism=Clytia hemisphaerica|type=transcript|length=471bp
cataatttttgcatacagttcaatatggcggatggaaagttgaaaaggtc
tatttatggggaagaatgaaattttcagaagatgctttagTCAATATCAG
GATTCCCATTTCTGTAAAATCGAGATTCCCCATATGGTTGCAAAATGgtg
gctatgggtaattccttgCCTtcgttcttttgctattttcttttatttat
tgttctatGTGACGTAAAGATGCTTCACAAATCGAAGTATTTTTATTAAA
TGCCTATTTTGACTCTCGAACTCCAACCCTGATCCTAACCAATATAAACG
ATTTTCACCCGTACGGATTGAATAACAAAAAATCTACTTACGAATCGAAG
AAAAAACGCAGAAAGGAGTTAGCACCAAGTACAGCAAGTAGAATACCGCT
AGAAATATGCATGCACCTATCCTAGGTAAAGTGTATAAAAAATATCTGTA
CCTTGATTTGGTACTATAAAC
Run BLAST on NCBI

transcript from alignment at sc0000132:491427..491897

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011819 ID=TCONS_00011819|Name=TCONS_00011819|organism=Clytia hemisphaerica|type=transcript|length=471bp|location=Sequence derived from alignment at sc0000132:491427..491897 (Clytia hemisphaerica)
GTTTATAGTACCAAATCAAGGTACAGATATTTTTTATACACTTTACCTAG
GATAGGTGCATGCATATTTCTAGCGGTATTCTACTTGCTGTACTTGGTGC
TAACTCCTTTCTGCGTTTTTTCTTCGATTCGTAAGTAGATTTTTTGTTAT
TCAATCCGTACGGGTGAAAATCGTTTATATTGGTTAGGATCAGGGTTGGA
GTTCGAGAGTCAAAATAGGCATTTAATAAAAATACTTCGATTTGTGAAGC
ATCTTTACGTCACatagaacaataaataaaagaaaatagcaaaagaacga
AGGcaaggaattacccatagccacCATTTTGCAACCATATGGGGAATCTC
GATTTTACAGAAATGGGAATCCTGATATTGActaaagcatcttctgaaaa
tttcattcttccccataaatagaccttttcaactttccatccgccatatt
gaactgtatgcaaaaattatg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006637XLOC_006637Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011819-exon-sc0000132-1491911889:491427..491897TCONS_00011819-exon-sc0000132-1491911889:491427..491897Clytia hemisphaericaexon
TCONS_00011819-exon-sc0000132-1510915933:491427..491897TCONS_00011819-exon-sc0000132-1510915933:491427..491897Clytia hemisphaericaexon
TCONS_00011819-exon-sc0000132-1575043694:491427..491897TCONS_00011819-exon-sc0000132-1575043694:491427..491897Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000132supercontigsc0000132:491427..491897 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.406234	0.660236	1.07324	0.749996	0.547829	0.721503	1.21865	0.325967	0.114108	0.565367	0.548759	0.992014	0.450289	0.935259	0.230673	0.412579	0.203305	0.208381	0.143945	0.451885	0.78554	0.766317	0.15526	0	1.0177	0.908269	0	0.198158	0.450888	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00011819 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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