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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011815 ID=TCONS_00011815|Name=TCONS_00011815|organism=Clytia hemisphaerica|type=transcript|length=2017bp
TCTCTTACCCTGCTTTTCTCTTTTCCTGCGTTTAGtatgtttctttttct
tcttctttgattttcttttcctctcttCTTCAGAGCTACTGGAGCTAGAC
GAAGATGATGTTTCTTCGCTACTGCTTCCACTTGAACTGGAACTAGGTGA
AACAGATCGATCTTTATCCTTTCGTTTCCTTTTTCTTGACCTTTTCTCGG
TCTTACTTCCATTGATGTTGTTGATTTTTGCAGGTTCTTCTTCGTNTCGT
TTcctttttcttgactttttctcgGTCTTACTTCCATTGATGTTGTTGAT
TTTTGCAGGTTCTTCTTCGTTCGTTTTCATAGTTTCATCCTCGGGCTTAG
ATGCCGCCATCTTGGTTCGAGGAATGAAACAAACAAGGACGTAGCCTGCG
GTCCGCAGCCTCTAGTGAAGTTTCACTAGACTGCGTCCGCAACGGCATAA
ATGAATTCGTCTGATTTTGAGCGAAGTAAAATTATTTATTgctgtttttt
attttctattttttttaatacgTGAATTCGcggaaaaaagcttttgaagg
TGGCTGGAACATGAAAGTCTGCCAAACCCCCTTAACTCATTTCCAAATAA
ATTAGTTTCCTTATAAGGAATTAATGTTCACTTGAATAATGTTAAGGTTT
CCATACGTACAATTTGAATTTATACATAAAAACTTAAACAATAATTTCGT
TAAggtgttttttttgttgtttttttgaataattttgtatttatttgatT
TACCCAATCTTGAATAATTATCATATTGCTCCGGTAGTATAAAAAAAATG
GTCGGTAGATACCGAGCTTATTCAGGGAGTTTCCAAAGGTTTCCAAAGCC
TATTGATTGGTTCCATATACAGAATCTATAGATTAAGATGATAGATGGTT
TTTTCTTAATTCCTGTGTATGCATTTCTTGTGATTTTTCTTTAgataaaa
acataaacaaaggaACGAAATTAATATTATTACATGTTTTGGAGCAATGT
GATCAAGACAATCACACGAAGCATTCGAACACCTTTCGCACCTCATCACT
TCACAAAATGTCGATCATTTGCCAATCAAAATACTCCCACGACGGAGGAA
AACTCCAAACCCAATAAGGAGAATGGCAAACCACCTGCCCCTCCTCCTGA
AGGCTTATGCTGCGGGTCAGGTTGTGCTAATTGTGTTTGGATGGTTTACG
CGGAAGAGTTGATGGATTTTTACCGTGATGGAGGGAAAGCCGCTCTGAAG
TCTCTTGAGAAGGTCCCTGATCCGAATATCAGAGAGTTCTTAAAAATGga
gttgaaaatgaaaatgaaataatgaGAATCTCAAGAAATCTTTCGATTGA
GTTTGAAGCTTATAGAGCAGAAGGTTTTTAATTCAAGTAGGCTATTTTTC
TGTGGATTTCTGTGGTGAAAATATGGTGCTGAACTACATGTTCTAGCTAG
CAATCTTGAGTTTGGATCGAAGCGAACATTGGTACCAATGCATTTTTAAT
TCGTCATTTAGCATACAACATTTCGactgtagccgccaattgccgtgtgg
gcatttttttgtccgttttactaccctaaaaccgtcccggtcttttttcg
cacctaaagacaatagaaaaaagtgttaaaaaaggattggatcgagttta
gggtggtaaatttaataataaagtggcacgcaccTAACCGCGTGAATACG
GTCGAAAAGCTGTATTGGATTCGATTTCTGATTTTAGATGGGTGTAGTAA
AAAAACGAACTTTTTTATAGGAATCATTGCATGTTTTGAAGCTCAGCtgt
gcttattttttggcactttgagcctcatttTTGTTCTTACTTTTAGCCGA
AAAATGGGGTATTCATAACCTATTTCTATGATTTTGCGTCTTTGTGATTT
GATTATCTCAGCTATTCCAGACATCAGTTTTGTTCTTATTATAAACTTGT
TCTTATGATAAAGTGTGTAGTTTAGTTTACTGATGTTTCTTTATTCGATA
CGAATTTTTTTGTACAT Run BLAST on NCBI protein sequence of TCONS_00011815-protein >TCONS_00011815-protein ID=TCONS_00011815-protein|Name=TCONS_00011815-protein|organism=Clytia hemisphaerica|type=polypeptide|length=120bp
MAASKPEDETMKTNEEEPAKINNINGSKTEKKSRKRKRXEEEPAKINNIN
GSKTEKRSRKRKRKDKDRSVSPSSSSSGSSSEETSSSSSSSSSEEERKRK
SKKKKKKHTKRRKREKQGKR Run BLAST on NCBI transcript from alignment at sc0000132:413744..415760 Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00011815 ID=TCONS_00011815|Name=TCONS_00011815|organism=Clytia hemisphaerica|type=transcript|length=2017bp|location=Sequence derived from alignment at sc0000132:413744..415760 (Clytia hemisphaerica)
ATGTACAAAAAAATTCGTATCGAATAAAGAAACATCAGTAAACTAAACTA
CACACTTTATCATAAGAACAAGTTTATAATAAGAACAAAACTGATGTCTG
GAATAGCTGAGATAATCAAATCACAAAGACGCAAAATCATAGAAATAGGT
TATGAATACCCCATTTTTCGGCTAAAAGTAAGAACAAaaatgaggctcaa
agtgccaaaaaataagcacaGCTGAGCTTCAAAACATGCAATGATTCCTA
TAAAAAAGTTCGTTTTTTTACTACACCCATCTAAAATCAGAAATCGAATC
CAATACAGCTTTTCGACCGTATTCACGCGGTTAggtgcgtgccactttat
tattaaatttaccaccctaaactcgatccaatccttttttaacacttttt
tctattgtctttaggtgcgaaaaaagaccgggacggttttagggtagtaa
aacggacaaaaaaatgcccacacggcaattggcggctacagtCGAAATGT
TGTATGCTAAATGACGAATTAAAAATGCATTGGTACCAATGTTCGCTTCG
ATCCAAACTCAAGATTGCTAGCTAGAACATGTAGTTCAGCACCATATTTT
CACCACAGAAATCCACAGAAAAATAGCCTACTTGAATTAAAAACCTTCTG
CTCTATAAGCTTCAAACTCAATCGAAAGATTTCTTGAGATTCtcattatt
tcattttcattttcaactcCATTTTTAAGAACTCTCTGATATTCGGATCA
GGGACCTTCTCAAGAGACTTCAGAGCGGCTTTCCCTCCATCACGGTAAAA
ATCCATCAACTCTTCCGCGTAAACCATCCAAACACAATTAGCACAACCTG
ACCCGCAGCATAAGCCTTCAGGAGGAGGGGCAGGTGGTTTGCCATTCTCC
TTATTGGGTTTGGAGTTTTCCTCCGTCGTGGGAGTATTTTGATTGGCAAA
TGATCGACATTTTGTGAAGTGATGAGGTGCGAAAGGTGTTCGAATGCTTC
GTGTGATTGTCTTGATCACATTGCTCCAAAACATGTAATAATATTAATTT
CGTtcctttgtttatgtttttatcTAAAGAAAAATCACAAGAAATGCATA
CACAGGAATTAAGAAAAAACCATCTATCATCTTAATCTATAGATTCTGTA
TATGGAACCAATCAATAGGCTTTGGAAACCTTTGGAAACTCCCTGAATAA
GCTCGGTATCTACCGACCATTTTTTTTATACTACCGGAGCAATATGATAA
TTATTCAAGATTGGGTAAatcaaataaatacaaaattattcaaaaaaaca
acaaaaaaaacaccTTAACGAAATTATTGTTTAAGTTTTTATGTATAAAT
TCAAATTGTACGTATGGAAACCTTAACATTATTCAAGTGAACATTAATTC
CTTATAAGGAAACTAATTTATTTGGAAATGAGTTAAGGGGGTTTGGCAGA
CTTTCATGTTCCAGCCAccttcaaaagcttttttccgCGAATTCAcgtat
taaaaaaaatagaaaataaaaaacagcAATAAATAATTTTACTTCGCTCA
AAATCAGACGAATTCATTTATGCCGTTGCGGACGCAGTCTAGTGAAACTT
CACTAGAGGCTGCGGACCGCAGGCTACGTCCTTGTTTGTTTCATTCCTCG
AACCAAGATGGCGGCATCTAAGCCCGAGGATGAAACTATGAAAACGAACG
AAGAAGAACCTGCAAAAATCAACAACATCAATGGAAGTAAGACcgagaaa
aagtcaagaaaaaggAAACGANACGAAGAAGAACCTGCAAAAATCAACAA
CATCAATGGAAGTAAGACCGAGAAAAGGTCAAGAAAAAGGAAACGAAAGG
ATAAAGATCGATCTGTTTCACCTAGTTCCAGTTCAAGTGGAAGCAGTAGC
GAAGAAACATCATCTTCGTCTAGCTCCAGTAGCTCTGAAGaagagaggaa
aagaaaatcaaagaagaagaaaaagaaacataCTAAACGCAGGAAAAGAG
AAAAGCAGGGTAAGAGA Coding sequence (CDS) from alignment at sc0000132:413744..415760 >TCONS_00011815 ID=TCONS_00011815|Name=TCONS_00011815|organism=Clytia hemisphaerica|type=CDS|length=360bp|location=Sequence derived from alignment at sc0000132:413744..415760 (Clytia hemisphaerica)
ATGGCGGCATCTAAGCCCGAGGATGAAACTATGAAAACGAACGAAGAAGA
ACCTGCAAAAATCAACAACATCAATGGAAGTAAGACcgagaaaaagtcaa
gaaaaaggAAACGANACGAAGAAGAACCTGCAAAAATCAACAACATCAAT
GGAAGTAAGACCGAGAAAAGGTCAAGAAAAAGGAAACGAAAGGATAAAGA
TCGATCTGTTTCACCTAGTTCCAGTTCAAGTGGAAGCAGTAGCGAAGAAA
CATCATCTTCGTCTAGCTCCAGTAGCTCTGAAGaagagaggaaaagaaaa
tcaaagaagaagaaaaagaaacataCTAAACGCAGGAAAAGAGAAAAGCA
GGGTAAGAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00011815-exon-sc0000132-1491911889:413744..415760 | TCONS_00011815-exon-sc0000132-1491911889:413744..415760 | Clytia hemisphaerica | exon |
| TCONS_00011815-exon-sc0000132-1510915933:413744..415760 | TCONS_00011815-exon-sc0000132-1510915933:413744..415760 | Clytia hemisphaerica | exon |
| TCONS_00011815-exon-sc0000132-1575043694:413744..415760 | TCONS_00011815-exon-sc0000132-1575043694:413744..415760 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000132 | supercontig | sc0000132:413744..415760 . |
Blast
The following BLAST results are available for this feature:
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