TCONS_00011812 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011812
Unique NameTCONS_00011812
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length330

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011812 ID=TCONS_00011812|Name=TCONS_00011812|organism=Clytia hemisphaerica|type=transcript|length=330bp
ATAGAAAGTGTCGAGAATCACCCCGATGAGCCATTAAAGGTCATACAAAT
TATCGAAGCTTGTCCCAATGAGCCATCGCACGTCATAGAAAGTGTTGAGA
ATCACCCCGATGAGCCATTAAAGGTCATACAAATTATCGAAGCTTGTCCC
AATGAGCCATCGCACGTCATAGAAAGTGCCGAAACTCGCCCTGATGAGTC
ATTAAAGGTCACACAAATTACCAAAGCTTGTCCCAATGAGCCATCGCACG
TCATAGAAAGTGTTGAGAATCACCCCGATGAGCCATTAAAGGTCACACAA
ATTACCGAAGCTTGTCCCAATGAGCCATCA
Run BLAST on NCBI

protein sequence of TCONS_00011812-protein

>TCONS_00011812-protein ID=TCONS_00011812-protein|Name=TCONS_00011812-protein|organism=Clytia hemisphaerica|type=polypeptide|length=110bp
IESVENHPDEPLKVIQIIEACPNEPSHVIESVENHPDEPLKVIQIIEACP
NEPSHVIESAETRPDESLKVTQITKACPNEPSHVIESVENHPDEPLKVTQ
ITEACPNEPS
Run BLAST on NCBI

transcript from alignment at sc0000132:355773..356102

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011812 ID=TCONS_00011812|Name=TCONS_00011812|organism=Clytia hemisphaerica|type=transcript|length=330bp|location=Sequence derived from alignment at sc0000132:355773..356102 (Clytia hemisphaerica)
TGATGGCTCATTGGGACAAGCTTCGGTAATTTGTGTGACCTTTAATGGCT
CATCGGGGTGATTCTCAACACTTTCTATGACGTGCGATGGCTCATTGGGA
CAAGCTTTGGTAATTTGTGTGACCTTTAATGACTCATCAGGGCGAGTTTC
GGCACTTTCTATGACGTGCGATGGCTCATTGGGACAAGCTTCGATAATTT
GTATGACCTTTAATGGCTCATCGGGGTGATTCTCAACACTTTCTATGACG
TGCGATGGCTCATTGGGACAAGCTTCGATAATTTGTATGACCTTTAATGG
CTCATCGGGGTGATTCTCGACACTTTCTAT

Coding sequence (CDS) from alignment at sc0000132:355773..356102

>TCONS_00011812 ID=TCONS_00011812|Name=TCONS_00011812|organism=Clytia hemisphaerica|type=CDS|length=330bp|location=Sequence derived from alignment at sc0000132:355773..356102 (Clytia hemisphaerica)
TGATGGCTCATTGGGACAAGCTTCGGTAATTTGTGTGACCTTTAATGGCT
CATCGGGGTGATTCTCAACACTTTCTATGACGTGCGATGGCTCATTGGGA
CAAGCTTTGGTAATTTGTGTGACCTTTAATGACTCATCAGGGCGAGTTTC
GGCACTTTCTATGACGTGCGATGGCTCATTGGGACAAGCTTCGATAATTT
GTATGACCTTTAATGGCTCATCGGGGTGATTCTCAACACTTTCTATGACG
TGCGATGGCTCATTGGGACAAGCTTCGATAATTTGTATGACCTTTAATGG
CTCATCGGGGTGATTCTCGACACTTTCTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006630XLOC_006630Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011812-exon-sc0000132-1491911889:355773..356102TCONS_00011812-exon-sc0000132-1491911889:355773..356102Clytia hemisphaericaexon
TCONS_00011812-exon-sc0000132-1510915933:355773..356102TCONS_00011812-exon-sc0000132-1510915933:355773..356102Clytia hemisphaericaexon
TCONS_00011812-exon-sc0000132-1575043694:355773..356102TCONS_00011812-exon-sc0000132-1575043694:355773..356102Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011812-proteinTCONS_00011812-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000132supercontigsc0000132:355773..356102 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.285912	0	0	0	0.624886	0	0	0	0	0	0	0	0.810017	0	0	0.440201	0	0	0.326144	0	0.414812	0	0	0	1.12377	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00011812 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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