TCONS_00011809 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011809
Unique NameTCONS_00011809
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1205

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011809 ID=TCONS_00011809|Name=TCONS_00011809|organism=Clytia hemisphaerica|type=transcript|length=1205bp
CGATTGTAATCTTTCAAAATATCTTTTACTTGCACTTCTTTCACTTTCAA
CGTCGCATTGATAAAACTTTCTCTGtagtattaaaaatatttctgttATT
GAAATAAAGCACGAAAATGGGCAATGTCAATGCAACAAATAGATGGGAAG
ATAGATATGAAAAAATCTCTGAGCTTGGACGTGGATATTTTGGCGTTGTG
TACAAAGCGAAGAGATTTAATATTGAGTATTACGCAGTAAAAGAAGTCAA
CAATGTTAGTGAATTAGCACTGCAGGAAATCAAAATTCTTAAAGATCTCG
AACATAAAAATATTGTTCAATTCTTTGAACATTTCATCAATAACGGCCAA
TTAGCCATTGTCATGGAGTATGCAGATGAAGGCACGATGCTTGAATTTCG
AAAGAACCTGTCTCACCAGAAAGAAAACGAACTCATAAAAGAAGATGTAA
TATGGGAAGTTATGAAGCAATTAGCTTCACCCTTAGATTATCTCCATCAA
AACAGGATAATGCATCGAGATCTTAAACCTGACAACATCTTGTGCTTTTC
TGACCAATGGAACGAACTCCctattttcaaactttcggATTTTGGAATCT
CAAAGCATGTTGACGGAGATACTCAACAGGGATATTACACAGGCACGCAA
ATCTTTTACGCATGTAGTTACACTTATGCAGCCCCGGAAGTGATCAAAGG
TCAGAATTACACTTTCAGTGCGGATATGTGGTCTTTGGGAGCTCTTATTT
CTTTCTGGTTCAATGGAAAACATCTTTTCACAGATGTAGAGGATGTTCTT
GAGTGGGAAGGTGAGACAAgcactttgtctagaaaattTAGCAAGTTTGG
TATCCGAACTGCGGTGGCAATATTACTCGATCCAGATTACCACAACCGAC
CAGATGTAGATGACGTACTTTCATTAAGATACGATTGagaaatgaaagat
tttttgacaatttgaaataacacatcttaacccttcgagcatcttcctaA
TTTTTACCAGGGGAAGCAtctatgaccttgaaattttgagcaGTGGTAAA
TATGTGGTAAATTTTGGTTCAGTCGCAGTCGCCTGTCTGGTCCGTTTTTA
CccaaaatgctcactttcagcataaccATTCTTCAGATTTTGCTGGAATT
TTGCCTGCAAGCCTGTATCATAAATACCCAACacttgtttaaatttcaag
tGAAT
Run BLAST on NCBI

protein sequence of TCONS_00011809-protein

>TCONS_00011809-protein ID=TCONS_00011809-protein|Name=TCONS_00011809-protein|organism=Clytia hemisphaerica|type=polypeptide|length=273bp
MGNVNATNRWEDRYEKISELGRGYFGVVYKAKRFNIEYYAVKEVNNVSEL
ALQEIKILKDLEHKNIVQFFEHFINNGQLAIVMEYADEGTMLEFRKNLSH
QKENELIKEDVIWEVMKQLASPLDYLHQNRIMHRDLKPDNILCFSDQWNE
LPIFKLSDFGISKHVDGDTQQGYYTGTQIFYACSYTYAAPEVIKGQNYTF
SADMWSLGALISFWFNGKHLFTDVEDVLEWEGETSTLSRKFSKFGIRTAV
AILLDPDYHNRPDVDDVLSLRYD
Run BLAST on NCBI

transcript from alignment at sc0000132:264507..265711

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011809 ID=TCONS_00011809|Name=TCONS_00011809|organism=Clytia hemisphaerica|type=transcript|length=1205bp|location=Sequence derived from alignment at sc0000132:264507..265711 (Clytia hemisphaerica)
ATTCacttgaaatttaaacaagtGTTGGGTATTTATGATACAGGCTTGCA
GGCAAAATTCCAGCAAAATCTGAAGAATggttatgctgaaagtgagcatt
ttggGTAAAAACGGACCAGACAGGCGACTGCGACTGAACCAAAATTTACC
ACATATTTACCACtgctcaaaatttcaaggtcatagaTGCTTCCCCTGGT
AAAAATtaggaagatgctcgaagggttaagatgtgttatttcaaattgtc
aaaaaatctttcatttctCAATCGTATCTTAATGAAAGTACGTCATCTAC
ATCTGGTCGGTTGTGGTAATCTGGATCGAGTAATATTGCCACCGCAGTTC
GGATACCAAACTTGCTAaattttctagacaaagtgcTTGTCTCACCTTCC
CACTCAAGAACATCCTCTACATCTGTGAAAAGATGTTTTCCATTGAACCA
GAAAGAAATAAGAGCTCCCAAAGACCACATATCCGCACTGAAAGTGTAAT
TCTGACCTTTGATCACTTCCGGGGCTGCATAAGTGTAACTACATGCGTAA
AAGATTTGCGTGCCTGTGTAATATCCCTGTTGAGTATCTCCGTCAACATG
CTTTGAGATTCCAAAATccgaaagtttgaaaatagGGAGTTCGTTCCATT
GGTCAGAAAAGCACAAGATGTTGTCAGGTTTAAGATCTCGATGCATTATC
CTGTTTTGATGGAGATAATCTAAGGGTGAAGCTAATTGCTTCATAACTTC
CCATATTACATCTTCTTTTATGAGTTCGTTTTCTTTCTGGTGAGACAGGT
TCTTTCGAAATTCAAGCATCGTGCCTTCATCTGCATACTCCATGACAATG
GCTAATTGGCCGTTATTGATGAAATGTTCAAAGAATTGAACAATATTTTT
ATGTTCGAGATCTTTAAGAATTTTGATTTCCTGCAGTGCTAATTCACTAA
CATTGTTGACTTCTTTTACTGCGTAATACTCAATATTAAATCTCTTCGCT
TTGTACACAACGCCAAAATATCCACGTCCAAGCTCAGAGATTTTTTCATA
TCTATCTTCCCATCTATTTGTTGCATTGACATTGCCCATTTTCGTGCTTT
ATTTCAATaacagaaatatttttaatactaCAGAGAAAGTTTTATCAATG
CGACGTTGAAAGTGAAAGAAGTGCAAGTAAAAGATATTTTGAAAGATTAC
AATCG

Coding sequence (CDS) from alignment at sc0000132:264507..265711

>TCONS_00011809 ID=TCONS_00011809|Name=TCONS_00011809|organism=Clytia hemisphaerica|type=CDS|length=822bp|location=Sequence derived from alignment at sc0000132:264507..265711 (Clytia hemisphaerica)
tCAATCGTATCTTAATGAAAGTACGTCATCTACATCTGGTCGGTTGTGGT
AATCTGGATCGAGTAATATTGCCACCGCAGTTCGGATACCAAACTTGCTA
aattttctagacaaagtgcTTGTCTCACCTTCCCACTCAAGAACATCCTC
TACATCTGTGAAAAGATGTTTTCCATTGAACCAGAAAGAAATAAGAGCTC
CCAAAGACCACATATCCGCACTGAAAGTGTAATTCTGACCTTTGATCACT
TCCGGGGCTGCATAAGTGTAACTACATGCGTAAAAGATTTGCGTGCCTGT
GTAATATCCCTGTTGAGTATCTCCGTCAACATGCTTTGAGATTCCAAAAT
ccgaaagtttgaaaatagGGAGTTCGTTCCATTGGTCAGAAAAGCACAAG
ATGTTGTCAGGTTTAAGATCTCGATGCATTATCCTGTTTTGATGGAGATA
ATCTAAGGGTGAAGCTAATTGCTTCATAACTTCCCATATTACATCTTCTT
TTATGAGTTCGTTTTCTTTCTGGTGAGACAGGTTCTTTCGAAATTCAAGC
ATCGTGCCTTCATCTGCATACTCCATGACAATGGCTAATTGGCCGTTATT
GATGAAATGTTCAAAGAATTGAACAATATTTTTATGTTCGAGATCTTTAA
GAATTTTGATTTCCTGCAGTGCTAATTCACTAACATTGTTGACTTCTTTT
ACTGCGTAATACTCAATATTAAATCTCTTCGCTTTGTACACAACGCCAAA
ATATCCACGTCCAAGCTCAGAGATTTTTTCATATCTATCTTCCCATCTAT
TTGTTGCATTGACATTGCCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006627XLOC_006627Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011809-proteinTCONS_00011809-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011809-exon-sc0000132-1491911889:264507..265711TCONS_00011809-exon-sc0000132-1491911889:264507..265711Clytia hemisphaericaexon
TCONS_00011809-exon-sc0000132-1510915933:264507..265711TCONS_00011809-exon-sc0000132-1510915933:264507..265711Clytia hemisphaericaexon
TCONS_00011809-exon-sc0000132-1575043694:264507..265711TCONS_00011809-exon-sc0000132-1575043694:264507..265711Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000132supercontigsc0000132:264507..265711 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0712404	0	0.0806621	0	0.0480359	0.0379586	0.228977	0.342985	0.0300165	0.185901	0	0	0.450108	0.123011	1.75969	2.30083	0.721979	0.986674	1.06022	0.871708	0.344397	0.151186	1.38861	1.15105	2.21814	1.70659	0.390739	0.208504	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000719Prot_kinase_dom
IPR008271Ser/Thr_kinase_AS
IPR017441Protein_kinase_ATP_BS
IPR011009Kinase-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0004672protein kinase activity
GO:0005524ATP binding
Vocabulary: Biological Process
TermDefinition
GO:0006468protein phosphorylation
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006468 protein phosphorylation
molecular_function GO:0005524 ATP binding
molecular_function GO:0004672 protein kinase activity
Blast
[Close]
BLAST of TCONS_00011809 vs. Swiss-Prot (Human)
Match: NEK6 (Serine/threonine-protein kinase Nek6 OS=Homo sapiens GN=NEK6 PE=1 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 5.677e-31
Identity = 78/262 (29.77%), Postives = 129/262 (49.24%), Query Frame = 3 
Query:  171 ELGRGYFGVVYKAKRF-NIEYYAVKEVN-------NVSELALQEIKILKDLEHKNIVQFFEHFINNGQLAIVMEYADEGTMLEFRKNLSHQKENELIKEDVIWEVMKQLASPLDYLHQNRIMHRDLKPDNILCFSDQWNELPIFKLSDFGISKHVDGDTQQGYYTGTQIFYACSYTYAAPEVIKGQNYTFSADMWSLGALI--------SFWFNGKHLFTDVEDVLEWEGETSTLSRKFSKFGIRTAVAILLDPDYHNRPDV 908
            ++GRG F  VYKA    + +  A+K+V           +  ++EI +LK L H NI+++ + FI + +L IV+E AD G + +  K    QK   LI E  +W+   QL S ++++H  R+MHRD+KP N+   +       + KL D G+ +    +T     T         Y Y +PE I    Y F +D+WSLG L+         F+ +  +LF+  + + +   +   L  +     +R  V++ + PD H RPD+
Sbjct:   50 KIGRGQFSEVYKATCLLDRKTVALKKVQIFEMMDAKARQDCVKEIGLLKQLNHPNIIKYLDSFIEDNELNIVLELADAGDLSQMIKYFKKQKR--LIPERTVWKYFVQLCSAVEHMHSRRVMHRDIKPANVFITATG-----VVKLGDLGLGRFFSSET-----TAAHSLVGTPY-YMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNLFSLCQKIEQC--DYPPLPGEHYSEKLRELVSMCICPDPHQRPDI 296
The following BLAST results are available for this feature:
BLAST of TCONS_00011809 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NEK65.677e-3129.77Serine/threonine-protein kinase Nek6 OS=Homo sapie... [more]
back to top