TCONS_00011803 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011803
Unique NameTCONS_00011803
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length273

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011803 ID=TCONS_00011803|Name=TCONS_00011803|organism=Clytia hemisphaerica|type=transcript|length=273bp
TGAGACGTCTGTCCTTCAATGTTTGGCTTATTGGTGGAAGATCTCCGTAG
AGTAATTTTTTTGTTGGATGTTCTCTCCACGAAATATTCAGAGCTTCCCG
AAGCATTCTTGTGTAAGCGCCATCCAGCATTTTCTCGAGGGTTTTAGTTA
GGGTCCACGAGGTAGCTCCATATAGAAGAACTGACTCGACTGTAGCTCTG
AAGAAAttcctttttaattttgctgatAGGTTAGATTTCCATATTTTGTC
CAGTTTGTTGAGGGCTGACCAGC
Run BLAST on NCBI

transcript from alignment at sc0000132:40206..40478

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011803 ID=TCONS_00011803|Name=TCONS_00011803|organism=Clytia hemisphaerica|type=transcript|length=273bp|location=Sequence derived from alignment at sc0000132:40206..40478 (Clytia hemisphaerica)
GCTGGTCAGCCCTCAACAAACTGGACAAAATATGGAAATCTAACCTatca
gcaaaattaaaaaggaaTTTCTTCAGAGCTACAGTCGAGTCAGTTCTTCT
ATATGGAGCTACCTCGTGGACCCTAACTAAAACCCTCGAGAAAATGCTGG
ATGGCGCTTACACAAGAATGCTTCGGGAAGCTCTGAATATTTCGTGGAGA
GAACATCCAACAAAAAAATTACTCTACGGAGATCTTCCACCAATAAGCCA
AACATTGAAGGACAGACGTCTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006621XLOC_006621Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011803-exon-sc0000132-1491911889:40206..40478TCONS_00011803-exon-sc0000132-1491911889:40206..40478Clytia hemisphaericaexon
TCONS_00011803-exon-sc0000132-1510915933:40206..40478TCONS_00011803-exon-sc0000132-1510915933:40206..40478Clytia hemisphaericaexon
TCONS_00011803-exon-sc0000132-1575043694:40206..40478TCONS_00011803-exon-sc0000132-1575043694:40206..40478Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000132supercontigsc0000132:40206..40478 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.52984	0.247768	0.465318	1.46544	0	1.02962	0.65397	3.66288	5.8529	4.63883	2.62252	2.06672	0.750545	0	0	0.407881	0.418065	0	0.604396	0.481771	0	0	0	0.583357	0.520633	0.581746	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00011803 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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