TCONS_00011801 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011801
Unique NameTCONS_00011801
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1346

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011801 ID=TCONS_00011801|Name=TCONS_00011801|organism=Clytia hemisphaerica|type=transcript|length=1346bp
GAGCCGGTTTCGGAGACCTATTTCACCGATCAGAATATCAAAAAGTTCAA
AGGATCAAGGAGAAATACCATGGCATCGACACCAACACAAAAATTCGATG
ATAGAAGAGTCTTTATTAAAGTTACTCAAGAGCGACATTTAGGACATACA
GCAGCTGCTACGGTCTACCACCGATGGTCTGTTGCTTTAAACGTCTCATT
GACCGTACTGTCAGCTTTGGCAACAGTCTTGGCATCACAAAAGATGGATG
TCTTGAATACATATGTTGTGCCGACTATTACTGGAGCTGCTACATTGCTA
TCAGCTGTGGTAGGGTATCTGAAGTTAGGTGATCTGAAAGCATCACATGC
GGAGTACGCcaagaaattcaagattttGATGTTCAAAATGATGGAAGCTA
CATCTGAGGCTGAAGAACACGAAATATGGTTGGAGTTTTATAAAGAATGT
TCTGAGGCACCGTTCTTGGATAGTCGTTATACAGCGAATTCGGATCGTTT
GTTTTCTGGTATGATTGACGATATAGAATTACCGGAAGAAAAAAATACAC
CGGGTGGAGATGAAAATGCAACAGAAGATTCTTCGAAACAGGATGCAGCT
AAAAAGCTGGTTGGTGAGTCACCAAAAGGAGGTTATGGATCGATGAAGAA
TGATGGTACCGCTATTGAAATGACAAACGATAACGCTAAAGCTAATTTGA
TACAATCGTAAGAAAGATATGTCTTGAGTGATCAGAAAATTTATGGTTGT
AATAGACATAAATAAGAAGATAATCATGGAGCATAAACTCATTTgatctt
ttctttcaaaaatgaacTAGTCTGCTCATAGACATATGAACATTCATGTC
TGCTTGATTCTTAGATATTTAGGAATGGacacttttttcttcaataaaaG
AAAGCCTAATAAAAGTTTTCTATGCTTTATCTTGAGAAAGAGTTTATTTA
ATTCTTTTAATGAGTGAATAAATGAACGAATGAATGATATGATCTATAAT
ACCGTCAAGAAAAAGGCAGAGGTTAtagtatttttttctaaacaggTTTT
CCAAGGATTTTATTCATCAGGTTATTTTTTAATATGTGTGGCTAAATGTG
CGGAAGAGTAGCAAGTATGTCCAGGGGGTCTGAAATCACTTCATCCAGTA
AAGAAAAATGTCAGTGAGTAGATAATGTCAGCCACAGAGTGGTTCGGGTT
TACGGGGTACCAAAGACGATTAACAAAGGGCAGAACAAGGTAAATTATTG
TTTGGTAGCTACCAAAGTATTCTCTCATGATGACATTTTCACCGGGGTAA
AGTACATTTACTTTGCTTGTCCGAGTTTTGACAAACATTCAATGAG
Run BLAST on NCBI

protein sequence of TCONS_00011801-protein

>TCONS_00011801-protein ID=TCONS_00011801-protein|Name=TCONS_00011801-protein|organism=Clytia hemisphaerica|type=polypeptide|length=236bp
EPVSETYFTDQNIKKFKGSRRNTMASTPTQKFDDRRVFIKVTQERHLGHT
AAATVYHRWSVALNVSLTVLSALATVLASQKMDVLNTYVVPTITGAATLL
SAVVGYLKLGDLKASHAEYAKKFKILMFKMMEATSEAEEHEIWLEFYKEC
SEAPFLDSRYTANSDRLFSGMIDDIELPEEKNTPGGDENATEDSSKQDAA
KKLVGESPKGGYGSMKNDGTAIEMTNDNAKANLIQS
Run BLAST on NCBI

transcript from alignment at sc0000132:531858..534736-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011801 ID=TCONS_00011801|Name=TCONS_00011801|organism=Clytia hemisphaerica|type=transcript|length=2879bp|location=Sequence derived from alignment at sc0000132:531858..534736- (Clytia hemisphaerica)
GAGCCGGTTTCGGAGACCTATTTCACCGGTACGGTCAAACTTCAAAAAAA
TACTTAGAAAAACACTTGAGAAAGTCCGAATAGAAGATAAGAAAGTAGAA
AATAGGGGGAAATAAGAGAGGATGCATCCTGGCTGGATGATATCGTTTGC
CAACCTAATAGCTGGGTCAAAAAATCTTCTGACAAGGTTCTTGTTTACAG
GGCTAAATCTATCTTGGAATTATTACGAGACTCGGAGGGGAGCGGAGCGT
TTGTCAACTTTCAATATATCTCGAGATAATTCATTTTAAGGTGGATAAAT
ATGCTGAAAAACTGCTGACTCAGCAAAAAATATCGATAATTTTCAATATT
TAAACCAAAATATCTCGGGATCTAGAAAGTTAACAAACCATACCATTTTT
GGATACTACTAATTCAGGGCTATCCAGCTGTGGGAATGATCTCTTCTGAA
AATGCTGACGTCATCGGAAAACGCTAAAAACGTCGATTTTTCGCCTTAAA
AATGCCATTTTTCGGCACCAGGTGGTCGAAACTTAACAAATAACCCCATT
TTCTTTATCTACTTTTCACGCTGAATCCGTTCGTAGTCTCAGATATTTGA
TTTTCAGACTTCAAAAAAACCGTTAATNTAACCCCATTTTCTTTATCTAC
TTTTCACGCTGAATCCGTTCGTAGTCTCAGATATTTGATTTTCAGACTTC
AAAAAAACCGTTAATAACCTTGATAAGTTCTATCGATTAACTAAAAATCG
ATTCACTCGAAAACTGCAGGAGATTCGAAGGGCAAATTTTTTTTGTCAAT
TCTACACCCTATAAGAAGAATAATTTCAAAAATTTGCCCTGATCTAAGGG
GTGCCCTACGAAGTGACACAATCCACTGCCTCGGCCGCTGGTCTACCGTA
TTTCATAAAACAATCAATGTACTGTACTGTTATGGCGGTTTTAAGAACGG
ATGAAGGACTCAAGGATACAAAAATACCATTTAATTAATGGTGGAAGGAG
GGCGAAGAAAAATGCTATCACTGCAGACAAGGCTTGAAAATGAGACGTCG
GCAAAAATCAGTCAGTTGTTTCAGTATCTTTAACAATTCCTTGGCTAAAT
TAATTGATACAATTGAGCCGGCATAGGGAACAACTCAAGAATGTAGCTCT
TCTTTCACATTCACAAGATCTTTGAGGAGATGAGAGAGAGAGAAAATAAA
TTTGAAAATAAATTGCCCTGGATATATATAACAATGCTTAATCGCACTAA
TTAAATTACAAACCATGACAAAATTAGTATCTATGGCAATTAACCGAACC
TCCAATGGGAGGAATGGTCTTTAATAATAAGTGTTCCTTTGACACAGTTG
GTCGTTTTCAAATTCGTTTGAACGCAAAAACGTTCCTCCTTGATGGGAAA
TGATGGCTACGACTGCTCATTTGGACACCTTTTCGTTTGTGTTATATGTC
TAGAGGGGTAAATGTGCAACGGATTACCAGTAACCTGGTGATAGGGAAAA
AAGGGGCTTTGTGAGCATGCCTTAAATGTATGATACATTTTAAAAACACC
TGTTATTTCAGATCAGAATATCAAAAAGTTCAAAGGATCAAGGAGAAATA
CCATGGCATCGACACCAACACAAAAATTCGATGATAGAAGAGTCTTTATT
AAAGTTACTCAAGAGCGACATTTAGGACATACAGCAGCTGCTACGGTCTA
CCACCGATGGTCTGTTGCTTTAAACGTCTCATTGACCGTACTGTCAGCTT
TGGCAACAGTCTTGGCATCACAAAAGATGGATGTCTTGAATACATATGTT
GTGCCGACTATTACTGGAGCTGCTACATTGCTATCAGCTGTGGTAGGGTA
TCTGAAGTTAGGTGATCTGAAAGCATCACATGCGGAGTACGCCAAGAAAT
TCAAGATTTTGATGTTCAAAATGATGGAAGCTACATCTGAGGCTGAAGAA
CACGAAATATGGTTGGAGTTTTATAAAGAATGTTCTGAGGCACCGTTCTT
GGATAGTCGTTATACAGCGAATTCGGATCGTTTGTTTTCTGGTATGATTG
ACGATATAGAATTACCGGAAGAAAAAAATACACCGGGTGGAGATGAAAAT
GCAACAGAAGATTCTTCGAAACAGGATGCAGCTAAAAAGCTGGTTGGTGA
GTCACCAAAAGGAGGTTATGGATCGATGAAGAATGATGGTACCGCTATTG
AAATGACAAACGATAACGCTAAAGCTAATTTGATACAATCGTAAGAAAGA
TATGTCTTGAGTGATCAGAAAATTTATGGTTGTAATAGACATAAATAAGA
AGATAATCATGGAGCATAAACTCATTTGATCTTTTCTTTCAAAAATGAAC
TAGTCTGCTCATAGACATATGAACATTCATGTCTGCTTGATTCTTAGATA
TTTAGGAATGGACACTTTTTTCTTCAATAAAAGAAAGCCTAATAAAAGTT
TTCTATGCTTTATCTTGAGAAAGAGTTTATTTAATTCTTTTAATGAGTGA
ATAAATGAACGAATGAATGATATGATCTATAATACCGTCAAGAAAAAGGC
AGAGGTTATAGTATTTTTTTCTAAACAGGTTTTCCAAGGATTTTATTCAT
CAGGTTATTTTTTAATATGTGTGGCTAAATGTGCGGAAGAGTAGCAAGTA
TGTCCAGGGGGTCTGAAATCACTTCATCCAGTAAAGAAAAATGTCAGTGA
GTAGATAATGTCAGCCACAGAGTGGTTCGGGTTTACGGGGTACCAAAGAC
GATTAACAAAGGGCAGAACAAGGTAAATTATTGTTTGGTAGCTACCAAAG
TATTCTCTCATGATGACATTTTCACCGGGGTAAAGTACATTTACTTTGCT
TGTCCGAGTTTTGACAAACATTCAATGAG

Coding sequence (CDS) from alignment at sc0000132:531858..534736-

>TCONS_00011801 ID=TCONS_00011801|Name=TCONS_00011801|organism=Clytia hemisphaerica|type=CDS|length=1422bp|location=Sequence derived from alignment at sc0000132:531858..534736- (Clytia hemisphaerica)
ATCAGAATATCAAAAAGTTCAAAGGATCAAGGAGAAATACCATGGCATCG
ACACCAACACAAAAATTCGATGATAGAAGAGTCTTTATTAAAGTTACTCA
AGAGCGACATTTAGGACATACAGCAGCTGCTACGGTCTACCACCGATGGT
CTGTTGCTTTAAACGTCTCATTGACCGTACTGTCAGCTTTGGCAACAGTC
TTGGCATCACAAAAGATGGATGTCTTGAATACATATGTTGTGCCGACTAT
TACTGGAGCTGCTACATTGCTATCAGCTGTGGTAGGGTATCTGAAGTTAG
GTGATCTGAAAGCATCACATGCGGAGTACGCCAAGAAATTCAAGATTTTG
ATGTTCAAAATGATGGAAGCTACATCTGAGGCTGAAGAACACGAAATATG
GTTGGAGTTTTATAAAGAATGTTCTGAGGCACCGTTCTTGGATAGTCGTT
ATACAGCGAATTCGGATCGTTTGTTTTCTGGTATGATTGACGATATAGAA
TTACCGGAAGAAAAAAATACACCGGGTGGAGATGAAAATGCAACAGAAGA
TTCTTCGAAACAGGATGCAGCTAAAAAGCTGGTTGGTGAGTCACCAAAAG
GAGGTTATGGATCGATGAAGAATGATGGTACCGCTATTGAAATGACAAAC
GATAACGCTAAAGCTAATTTGATACAATCGTAAGAGCCGGTTTCGGAGAC
CTATTTCACCGATCAGAATATCAAAAAGTTCAAAGGATCAAGGAGAAATA
CCATGGCATCGACACCAACACAAAAATTCGATGATAGAAGAGTCTTTATT
AAAGTTACTCAAGAGCGACATTTAGGACATACAGCAGCTGCTACGGTCTA
CCACCGATGGTCTGTTGCTTTAAACGTCTCATTGACCGTACTGTCAGCTT
TGGCAACAGTCTTGGCATCACAAAAGATGGATGTCTTGAATACATATGTT
GTGCCGACTATTACTGGAGCTGCTACATTGCTATCAGCTGTGGTAGGGTA
TCTGAAGTTAGGTGATCTGAAAGCATCACATGCGGAGTACGCCAAGAAAT
TCAAGATTTTGATGTTCAAAATGATGGAAGCTACATCTGAGGCTGAAGAA
CACGAAATATGGTTGGAGTTTTATAAAGAATGTTCTGAGGCACCGTTCTT
GGATAGTCGTTATACAGCGAATTCGGATCGTTTGTTTTCTGGTATGATTG
ACGATATAGAATTACCGGAAGAAAAAAATACACCGGGTGGAGATGAAAAT
GCAACAGAAGATTCTTCGAAACAGGATGCAGCTAAAAAGCTGGTTGGTGA
GTCACCAAAAGGAGGTTATGGATCGATGAAGAATGATGGTACCGCTATTG
AAATGACAAACGATAACGCTAAAGCTAATTTGATACAATCGTAAGAGCCG
GTTTCGGAGACCTATTTCACCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006619XLOC_006619Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011801-proteinTCONS_00011801-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011801-exon-sc0000132-1575043694:534709..534736TCONS_00011801-exon-sc0000132-1575043694:534709..534736Clytia hemisphaericaexon
TCONS_00011801-exon-sc0000132-1575043694:531858..533175TCONS_00011801-exon-sc0000132-1575043694:531858..533175Clytia hemisphaericaexon
TCONS_00011801-exon-sc0000132-1510915933:534709..534736TCONS_00011801-exon-sc0000132-1510915933:534709..534736Clytia hemisphaericaexon
TCONS_00011801-exon-sc0000132-1510915933:531858..533175TCONS_00011801-exon-sc0000132-1510915933:531858..533175Clytia hemisphaericaexon
TCONS_00011801-exon-sc0000132-1491911889:534709..534736TCONS_00011801-exon-sc0000132-1491911889:534709..534736Clytia hemisphaericaexon
TCONS_00011801-exon-sc0000132-1491911889:531858..533175TCONS_00011801-exon-sc0000132-1491911889:531858..533175Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000132supercontigsc0000132:531858..534736 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.0570081	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00011801 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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