TCONS_00011793 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011793
Unique NameTCONS_00011793
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1024

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011793 ID=TCONS_00011793|Name=TCONS_00011793|organism=Clytia hemisphaerica|type=transcript|length=1024bp
TTTTCTTAAAACTGGTTTCGGAAATCCAACGtcaaaaaagcaagaaaaaa
tgtGAAACAAAAAGTTCGTACTCCCGCAAACACCTAATAGTAGGGAAACA
ATATTACACCATTTTTCGTCAAAAAAGTATACAGTAAACACAAATCGTGC
GCTAAAAATTTTACTAGATAAAGGAAACTCGCAAGATGGCAAAATGTGGA
GTGTTGTTAATGTTTATTCTCGGGTTAATCTCCGTTGGACTAATTGTAGC
CTGTGTATCTGGCAATGATTGGGCTAGTTCATTGTTTAACAACAAACCTG
TGAGAGTTGGATTATGGAAACGTTGCACAGGCCACCCTGGAGAGGATGAA
TGCGTGGTCCTTGGCGACAACGTGGAGTCTTGGACGCAAGTCGTGAGAGC
TTTAGCCGTCTTAACTTGCTTATTTTCAGCTATTGGAACCGTTTTAACTT
TATTGTTGTTGATTGCAAAGAATCTTCCAAGTCGATATATCACCTGGTTC
TTCTTATGTGCAGCATTTGCAATGTCCTCATCTCTGGTGGTTTTCATCGT
CAAGATTCCAACAGCCGATGCTGCcagtgaaaatacgaaaatcgGATGGT
GTTATATCGTGGGATGGGTCGGTGTTATCTTCGACCTCGCAACATTCTTG
TTTGGCTTCTGTGCTGATAAATTTTAGGATTACCCTTTTTGATGATCTCT
CGGTAGAAGTTTGTACACTGATGAATTTTATTTTGGCTCATGGTAGTTCC
AATCGAGGCTTTCAATGAAATATCTGGTAAACATttaaaagagctttcca
acaaTGCTAAGTGTATGGTTAAGATGattcaatttcatttgaaaaacttg
acacattaaaagattttttcaagtgTATGCTTAAATGGGGAGCATGATCT
TAATTCTTAATAAACTGATCAAAAGCTTTTTGCTTTGGAGGTATTAAATT
TTGTACATAATTAGATCTATCATACCTAAATTTAATATTTAACTAAACTT
GAATGACTTGTCATTTAATATTTC
Run BLAST on NCBI

protein sequence of TCONS_00011793-protein

>TCONS_00011793-protein ID=TCONS_00011793-protein|Name=TCONS_00011793-protein|organism=Clytia hemisphaerica|type=polypeptide|length=163bp
MAKCGVLLMFILGLISVGLIVACVSGNDWASSLFNNKPVRVGLWKRCTGH
PGEDECVVLGDNVESWTQVVRALAVLTCLFSAIGTVLTLLLLIAKNLPSR
YITWFFLCAAFAMSSSLVVFIVKIPTADAASENTKIGWCYIVGWVGVIFD
LATFLFGFCADKF
Run BLAST on NCBI

transcript from alignment at sc0000132:360681..362312-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011793 ID=TCONS_00011793|Name=TCONS_00011793|organism=Clytia hemisphaerica|type=transcript|length=1632bp|location=Sequence derived from alignment at sc0000132:360681..362312- (Clytia hemisphaerica)
TTTTCTTAAAACTGGTTTCGGAAATCCAACGTCAAAAAAGCAAGAAAAAA
TGTGAAACAAAAAGTTCGTACTCCCGCAAACACCTAATAGTAGGGAAACA
ATATTACACCATTTTTCGTCAAAAAAGTATACAGTAAACACAAATCGTGC
GCTAAAAATTTTACTAGATAAAGGAAACTCGCAAGATGGCAAAATGTGGA
GTGTTGTTAATGTTTATTCTCGGGTTAATCTCCGTTGGACTAATTGTAGC
CTGTGTATCTGGCAATGATTGGGCTAGTTCATTGTTTAACAACAAACCTG
TGAGAGTTGGATTATGGAAACGTTGCACAGGCCACCCTGGAGAGGATGAA
TGCGTGGTCCTTGGCGACAACGTGGAGTCTTGGACGCAAGTCGTGAGAGC
TTTAGCCGTCTTAACTTGCTTATTTTCAGCTATTGGAACCGTTTTAACTT
TATTGTTGTTGATTGCAAAGAATCTTCCAAGTCGATATATCACCTGGTTC
TTCTTATGTGCAGGTCGGTAGAGTTTCTTATCTAAATTTCATTTTCAAAG
TTTCTATTATATTTCAAGAACGTTAGGAAGTGAGCCTGCGCGTGTCCCTG
AATCAGCTTGGTCTCAAGAGGTGAATAAGCCTCCCAAACCACGTCTGTTC
ACCAATTTTATGTAAACTCAAGTTTCTCCAATAACTAGTTATCAACTCCA
TATTTATAAGTACATGGGTTTTATTTTGTTCTTATTGTACTGTCCTTTGG
GACTTCAAAAAGCAGTTTCCAAGCTAGGGAAAAATTTTCTATGGAGCGTT
GAAGAGGGTTAGTTTAAAGCCCCATAGGGGTTAGAGATGAATCTTTAACC
GTTCTCAAACAAGAAGAAGTGAAGTCTGCATTTATATTAGAGATCCTTAG
AAAGTCGATTTTTGAAGTTCCTTTTTGGCAAAACTGAATTTACCACCTGC
CCTTTAGCGTGAAAAGTAGGTCTCCATAATGGATGGGGTTTAAAAAATTG
TAACTTACGGGAGCTAAGCCTTTTCTTTACCAGGGGGCTCTTATCAAACT
GTTGTTTCCCTATTGAGTACCCCCTGTCAGATAACTTGACAGAATAAACA
TTTTCTTTCCCCATTTTTCAGCATTTGCAATGTCCTCATCTCTGGTGGTT
TTCATCGTCAAGATTCCAACAGCCGATGCTGCCAGTGAAAATACGAAAAT
CGGATGGTGTTATATCGTGGGATGGGTCGGTGTTATCTTCGACCTCGCAA
CATTCTTGTTTGGCTTCTGTGCTGATAAATTTTAGGATTACCCTTTTTGA
TGATCTCTCGGTAGAAGTTTGTACACTGATGAATTTTATTTTGGCTCATG
GTAGTTCCAATCGAGGCTTTCAATGAAATATCTGGTAAACATTTAAAAGA
GCTTTCCAACAATGCTAAGTGTATGGTTAAGATGATTCAATTTCATTTGA
AAAACTTGACACATTAAAAGATTTTTTCAAGTGTATGCTTAAATGGGGAG
CATGATCTTAATTCTTAATAAACTGATCAAAAGCTTTTTGCTTTGGAGGT
ATTAAATTTTGTACATAATTAGATCTATCATACCTAAATTTAATATTTAA
CTAAACTTGAATGACTTGTCATTTAATATTTC

Coding sequence (CDS) from alignment at sc0000132:360681..362312-

>TCONS_00011793 ID=TCONS_00011793|Name=TCONS_00011793|organism=Clytia hemisphaerica|type=CDS|length=984bp|location=Sequence derived from alignment at sc0000132:360681..362312- (Clytia hemisphaerica)
CATTTGCAATGTCCTCATCTCTGGTGGTTTTCATCGTCAAGATTCCAACA
GCCGATGCTGCCAGTGAAAATACGAAAATCGGATGGTGTTATATCGTGGG
ATGGGTCGGTGTTATCTTCGACCTCGCAACATTCTTGTTTGGCTTCTGTG
CTGATAAATTTTAGATGGCAAAATGTGGAGTGTTGTTAATGTTTATTCTC
GGGTTAATCTCCGTTGGACTAATTGTAGCCTGTGTATCTGGCAATGATTG
GGCTAGTTCATTGTTTAACAACAAACCTGTGAGAGTTGGATTATGGAAAC
GTTGCACAGGCCACCCTGGAGAGGATGAATGCGTGGTCCTTGGCGACAAC
GTGGAGTCTTGGACGCAAGTCGTGAGAGCTTTAGCCGTCTTAACTTGCTT
ATTTTCAGCTATTGGAACCGTTTTAACTTTATTGTTGTTGATTGCAAAGA
ATCTTCCAAGTCGATATATCACCTGGTTCTTCTTATGTGCAGCATTTGCA
ATGTCCTCATCTCTGGTGGTTTTCATCGTCAAGATTCCAACAGCCGATGC
TGCCAGTGAAAATACGAAAATCGGATGGTGTTATATCGTGGGATGGGTCG
GTGTTATCTTCGACCTCGCAACATTCTTGTTTGGCTTCTGTGCTGATAAA
TTTTAGATGGCAAAATGTGGAGTGTTGTTAATGTTTATTCTCGGGTTAAT
CTCCGTTGGACTAATTGTAGCCTGTGTATCTGGCAATGATTGGGCTAGTT
CATTGTTTAACAACAAACCTGTGAGAGTTGGATTATGGAAACGTTGCACA
GGCCACCCTGGAGAGGATGAATGCGTGGTCCTTGGCGACAACGTGGAGTC
TTGGACGCAAGTCGTGAGAGCTTTAGCCGTCTTAACTTGCTTATTTTCAG
CTATTGGAACCGTTTTAACTTTATTGTTGTTGATTGCAAAGAATCTTCCA
AGTCGATATATCACCTGGTTCTTCTTATGTGCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006615XLOC_006615Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011793-proteinTCONS_00011793-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011793-exon-sc0000132-1575043694:361800..362312TCONS_00011793-exon-sc0000132-1575043694:361800..362312Clytia hemisphaericaexon
TCONS_00011793-exon-sc0000132-1575043694:360681..361191TCONS_00011793-exon-sc0000132-1575043694:360681..361191Clytia hemisphaericaexon
TCONS_00011793-exon-sc0000132-1510915933:361800..362312TCONS_00011793-exon-sc0000132-1510915933:361800..362312Clytia hemisphaericaexon
TCONS_00011793-exon-sc0000132-1510915933:360681..361191TCONS_00011793-exon-sc0000132-1510915933:360681..361191Clytia hemisphaericaexon
TCONS_00011793-exon-sc0000132-1491911889:361800..362312TCONS_00011793-exon-sc0000132-1491911889:361800..362312Clytia hemisphaericaexon
TCONS_00011793-exon-sc0000132-1491911889:360681..361191TCONS_00011793-exon-sc0000132-1491911889:360681..361191Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000132supercontigsc0000132:360681..362312 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.130593	0.0848991	0	0	0	0.0927773	0	0.261973	0.0366827	0	0	0	16.7337	15.3938	0.0247183	0.0265265	10.4245	18.4219	23.5999	32.3464	7.95467	8.19113	0.748676	1.08905	1.16843	1.33478	0	0	0.048316	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR004031PMP22/EMP/MP20/Claudin
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00011793 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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