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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011791 ID=TCONS_00011791|Name=TCONS_00011791|organism=Clytia hemisphaerica|type=transcript|length=1897bp
CACTGAAACTCGTCCTAGTGAGGCatcaaatgtcaaacatagTACCGAGG
TTTGTGTCGATGAGCCGTCAACGATTTTACCATGTATCAAAGATTGTCCC
AACGAGCCAACAGACAATTCACCAAAGGCTAAAACTAACCTTGTTAGTTA
TACTTCTGATCAGGGAGACTGTCCAAAAGAACACAATGTACAAATGGATA
CAACTGCAGCGCCTAGTATTTTACAAAGAGCCTCATGTAATGATGTAGCT
CCTAATTTCAAAACAGAAGAAACTTCCTCTTCGGATGGAAACAGTTCTGG
ACAGAATTTCGATTTAACTTCAAAAAAAGTCACGAAATCAGCAGATGTGT
TGATTCAACATAAGTGCAGTCTCTCTAAAAGACACGTAAGTGCCGGAGAT
GTTAGATCTAGAGAGAATCATGCCACAGCAAGAGGACATCCACAGCTCCT
TAGTGAAAGGAGAAAGAAACTCATTGGTGATGTAGACGTGACAATTGTCT
CTGGTAAACACGAACAGCGTGATGATTCTCGTCTTCAAAAACAACTGACT
GAAGAGATGCAAGCTAAAGAACAACTTCTTGTTGACAAGCTGCATCTCGA
AAAgGAGCTTGCACGtgagaaagaaaagaagaagacaTTCACCAAAATGA
ACGTCCTTCTTACGATCGCAAGCAAATTAAACTTTAAAAAGGCCCGACGA
AGTGAGTGTGAAATAGAAGAAATGGGTCGTCGTATTAAAAAGATGGAGAA
AGAATTGTTTGAAAAGATTGCTCTCCTAGATGACATGAATGTCCGCAATG
AAGAACCTAAAGTCgcaaaaaacaatggaaaacaAGCGATCACTGGTGAC
GCACCACACGAAAAAGTTGCAATGGTAGAGCCCAATGTTAGCAGTGAGGT
ACCAGAGTATTTCGACGAGTCTAACCATAATGGAGACATCTCTTGGGATT
TGGAGAGTGACGATGGAAATGAAGAATATATCCGGGAGAGAGTGGTGACG
ATCGTCGAATTACCGATGGGGCGATTGGCAGCTGACAACGATGAGGCCAT
GCTTCGGATGCGGGAGATGGAAGAAAATCTCTCTGAACTCAATAACCGTT
ACATTCAACTTGACGATCAGTTCAAAGAGGCGTCGAAAGCTCTCTCAGAA
ACGAGCAGCAAAAATCGACGGCTGCAAGACGAGTGCAAGGTGATTAGTGA
CGAACTAGATGGAACTACGGAAAGGAAAAGGAAAGAAGAGAAGAAGAGAG
CAAAAGGAACTCTCGGTCAACGATTTCGGCGGCTTTTCGGCTGCGCTTCT
GCACGTAGGGGTGATTACGTCAATGAGTCTGAAATCACTGACGTTGATGA
ATACGTAAGACACATACAATCCACGGCGCCATGTTAAATTCTTCTCAATT
ATCATCTTATTTcaatttaaatctaaaaaaatgtaaagctaggttcttat
tttgatgcgtagtaaaaatgtatataaaaataccccaaaaatgtaaaata
tttctctCTCTGTTTGCAAGTGttggaatgacaacaaagttgtaTGATTG
TGTTTCCAGGACCGGGTGGTTCCACaatcaaactcaaaaagtcgGGTTAA
CTACACTGAAATCTTATCTCCACTGGAAATAAGTTAAGACACTTCAAATT
TGAAGCGCAAGTACTCACTCTTCATGTTCACGATTTTcctaggctgcatg
catccccaaattagttttgatataggggatgcgaatcaggctctgatatc
gcttccgagaaaattaccgaatagctatgtattttgcagaaNNNNNNNNN
NNNNtctcaagataacaaaagacgacaaactgtcaatcaaagttctctat
cattcaactctttttttggttagcagattttttgctaagttcggaac Run BLAST on NCBI protein sequence of TCONS_00011791-protein >TCONS_00011791-protein ID=TCONS_00011791-protein|Name=TCONS_00011791-protein|organism=Clytia hemisphaerica|type=polypeptide|length=461bp
TETRPSEASNVKHSTEVCVDEPSTILPCIKDCPNEPTDNSPKAKTNLVSY
TSDQGDCPKEHNVQMDTTAAPSILQRASCNDVAPNFKTEETSSSDGNSSG
QNFDLTSKKVTKSADVLIQHKCSLSKRHVSAGDVRSRENHATARGHPQLL
SERRKKLIGDVDVTIVSGKHEQRDDSRLQKQLTEEMQAKEQLLVDKLHLE
KELAREKEKKKTFTKMNVLLTIASKLNFKKARRSECEIEEMGRRIKKMEK
ELFEKIALLDDMNVRNEEPKVAKNNGKQAITGDAPHEKVAMVEPNVSSEV
PEYFDESNHNGDISWDLESDDGNEEYIRERVVTIVELPMGRLAADNDEAM
LRMREMEENLSELNNRYIQLDDQFKEASKALSETSSKNRRLQDECKVISD
ELDGTTERKRKEEKKRAKGTLGQRFRRLFGCASARRGDYVNESEITDVDE
YVRHIQSTAPC Run BLAST on NCBI transcript from alignment at sc0000132:353242..355632- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00011791 ID=TCONS_00011791|Name=TCONS_00011791|organism=Clytia hemisphaerica|type=transcript|length=2391bp|location=Sequence derived from alignment at sc0000132:353242..355632- (Clytia hemisphaerica)
CACTGAAACTCGTCCTAGTGAGGCATCAAATGTCAAACATAGTACCGAGG
TTTGTGTCGATGAGCCGTCAACGATTTTACCATGTATCAAAGATTGTCCC
AACGAGCCAACAGACAATTCACCAAAGGCTAAAACTAACCTTGTTAGTTA
TACTTCTGATCAGGGAGACTGTCCAAAAGAACACAATGTACAAATGGATA
CAACTGCAGCGCCTAGTATTTTACAAAGAGCCTCATGTAATGATGTAGCT
CCTAATTTCAAAACAGAAGAAACTTCCTCTTCGGATGGAAACAGTTCTGG
ACAGAATTTCGATTTAACTTCAAAAAAAGTCACGAAATCAGCAGATGTGT
TGATTCAACATAAGTGCAGTCTCTCTAAAAGACACGTAAGTGCCGGAGAT
GTTAGATCTAGAGAGAATCATGCCACAGCAAGAGGACATCCACAGCTCCT
TAGTGAAAGGAGAAAGAAACTCATTGGTGATGTAGACGTGACAATTGTCT
CTGGTAAACACGAACAGCGTGATGATTCTCGTCTTCAAAAACAACTGACT
GAAGAGATGCAAGCTAAAGAACAACTTCTTGTTGACAAGCTGCATCTCGA
AAAGGTAATTATCTTTTTTCCTGTACGCTTGAGGTGTTTTTCAAAGCGGT
GAATATTATCATTTTCCCCTCCATCCAAAATAATTCACAACCTTCATCTT
AGACGAGCCTTGATATGAGAATATTTAACACAAATAAGAGCTGATGTTTA
ACTGTATTCATTATCTTCTCATTAGCAAAGAAACACATTTAGTGTTCTAT
TTTTAACACCCTTCCATACCACATAAACTGGCTTACATTTTTTATTGAGG
ATTCCGAAAACCGATGTTCCTAATTTTAGGAGCTTGCACGTGAGAAAGAA
AAGAAGAAGACATTCACCAAAATGAACGTCCTTCTTACGATCGCAAGCAA
ATTAAACTTTAAAAAGGCCCGACGAAGTGAGTGTGAAATAGAAGAAATGG
GTCGTCGTATTAAAAAGATGGAGAAAGAATTGTTTGAAAAGATTGCTCTC
CTAGATGACATGAATGTCCGCAATGAAGAACCTAAAGTCGCAAAAAACAA
TGGAAAACAAGCGATCACTGGTGACGCACCACACGAAAAAGTTGCAATGG
TAGAGCCCAATGTTAGCAGTGAGGTACCAGAGTATTTCGACGAGTCTAAC
CATAATGGAGACATCTCTTGGGATTTGGAGAGTGACGATGGAAATGAAGA
ATATATCCGGGAGAGAGTGGTGACGATCGTCGAATTACCGATGGGGCGAT
TGGCAGCTGACAACGATGAGGTACCATACCTTTTTCAGCGCCCTTTCCAT
TATGTACACATGCTTGACACGTACACTGTTTAAGGTTCTCAAAAAGATTA
AAAGTACACTTACGCAGGATCATTGTTTCATTAAACCACCCTAACCTCAT
CCCTCGCGACCAATCCCTTGTTAGCTTCAAACACGAAGCTATGAACGAAC
CATGTTTTTATCGTTAAAAATAGTTTCTTATTGTTATAGGCCATGCTTCG
GATGCGGGAGATGGAAGAAAATCTCTCTGAACTCAATAACCGTTACATTC
AACTTGACGATCAGTTCAAAGAGGCGTCGAAAGCTCTCTCAGAAACGAGC
AGCAAAAATCGACGGCTGCAAGACGAGTGCAAGGTGATTAGTGACGAACT
AGATGGAACTACGGAAAGGAAAAGGAAAGAAGAGAAGAAGAGAGCAAAAG
GAACTCTCGGTCAACGATTTCGGCGGCTTTTCGGCTGCGCTTCTGCACGT
AGGGGTGATTACGTCAATGAGTCTGAAATCACTGACGTTGATGAATACGT
AAGACACATACAATCCACGGCGCCATGTTAAATTCTTCTCAATTATCATC
TTATTTCAATTTAAATCTAAAAAAATGTAAAGCTAGGTTCTTATTTTGAT
GCGTAGTAAAAATGTATATAAAAATACCCCAAAAATGTAAAATATTTCTC
TCTCTGTTTGCAAGTGTTGGAATGACAACAAAGTTGTATGATTGTGTTTC
CAGGACCGGGTGGTTCCACAATCAAACTCAAAAAGTCGGGTTAACTACAC
TGAAATCTTATCTCCACTGGAAATAAGTTAAGACACTTCAAATTTGAAGC
GCAAGTACTCACTCTTCATGTTCACGATTTTCCTAGGCTGCATGCATCCC
CAAATTAGTTTTGATATAGGGGATGCGAATCAGGCTCTGATATCGCTTCC
GAGAAAATTACCGAATAGCTATGTATTTTGCAGAANNNNNNNNNNNNNTC
TCAAGATAACAAAAGACGACAAACTGTCAATCAAAGTTCTCTATCATTCA
ACTCTTTTTTTGGTTAGCAGATTTTTTGCTAAGTTCGGAAC Coding sequence (CDS) from alignment at sc0000132:353242..355632- >TCONS_00011791 ID=TCONS_00011791|Name=TCONS_00011791|organism=Clytia hemisphaerica|type=CDS|length=4158bp|location=Sequence derived from alignment at sc0000132:353242..355632- (Clytia hemisphaerica)
GCCATGCTTCGGATGCGGGAGATGGAAGAAAATCTCTCTGAACTCAATAA
CCGTTACATTCAACTTGACGATCAGTTCAAAGAGGCGTCGAAAGCTCTCT
CAGAAACGAGCAGCAAAAATCGACGGCTGCAAGACGAGTGCAAGGTGATT
AGTGACGAACTAGATGGAACTACGGAAAGGAAAAGGAAAGAAGAGAAGAA
GAGAGCAAAAGGAACTCTCGGTCAACGATTTCGGCGGCTTTTCGGCTGCG
CTTCTGCACGTAGGGGTGATTACGTCAATGAGTCTGAAATCACTGACGTT
GATGAATACGTAAGACACATACAATCCACGGCGCCATGTTAAGAGCTTGC
ACGTGAGAAAGAAAAGAAGAAGACATTCACCAAAATGAACGTCCTTCTTA
CGATCGCAAGCAAATTAAACTTTAAAAAGGCCCGACGAAGTGAGTGTGAA
ATAGAAGAAATGGGTCGTCGTATTAAAAAGATGGAGAAAGAATTGTTTGA
AAAGATTGCTCTCCTAGATGACATGAATGTCCGCAATGAAGAACCTAAAG
TCGCAAAAAACAATGGAAAACAAGCGATCACTGGTGACGCACCACACGAA
AAAGTTGCAATGGTAGAGCCCAATGTTAGCAGTGAGGTACCAGAGTATTT
CGACGAGTCTAACCATAATGGAGACATCTCTTGGGATTTGGAGAGTGACG
ATGGAAATGAAGAATATATCCGGGAGAGAGTGGTGACGATCGTCGAATTA
CCGATGGGGCGATTGGCAGCTGACAACGATGAGACTGAAACTCGTCCTAG
TGAGGCATCAAATGTCAAACATAGTACCGAGGTTTGTGTCGATGAGCCGT
CAACGATTTTACCATGTATCAAAGATTGTCCCAACGAGCCAACAGACAAT
TCACCAAAGGCTAAAACTAACCTTGTTAGTTATACTTCTGATCAGGGAGA
CTGTCCAAAAGAACACAATGTACAAATGGATACAACTGCAGCGCCTAGTA
TTTTACAAAGAGCCTCATGTAATGATGTAGCTCCTAATTTCAAAACAGAA
GAAACTTCCTCTTCGGATGGAAACAGTTCTGGACAGAATTTCGATTTAAC
TTCAAAAAAAGTCACGAAATCAGCAGATGTGTTGATTCAACATAAGTGCA
GTCTCTCTAAAAGACACGTAAGTGCCGGAGATGTTAGATCTAGAGAGAAT
CATGCCACAGCAAGAGGACATCCACAGCTCCTTAGTGAAAGGAGAAAGAA
ACTCATTGGTGATGTAGACGTGACAATTGTCTCTGGTAAACACGAACAGC
GTGATGATTCTCGTCTTCAAAAACAACTGACTGAAGAGATGCAAGCTAAA
GAACAACTTCTTGTTGACAAGCTGCATCTCGAAAAGGCCATGCTTCGGAT
GCGGGAGATGGAAGAAAATCTCTCTGAACTCAATAACCGTTACATTCAAC
TTGACGATCAGTTCAAAGAGGCGTCGAAAGCTCTCTCAGAAACGAGCAGC
AAAAATCGACGGCTGCAAGACGAGTGCAAGGTGATTAGTGACGAACTAGA
TGGAACTACGGAAAGGAAAAGGAAAGAAGAGAAGAAGAGAGCAAAAGGAA
CTCTCGGTCAACGATTTCGGCGGCTTTTCGGCTGCGCTTCTGCACGTAGG
GGTGATTACGTCAATGAGTCTGAAATCACTGACGTTGATGAATACGTAAG
ACACATACAATCCACGGCGCCATGTTAAGAGCTTGCACGTGAGAAAGAAA
AGAAGAAGACATTCACCAAAATGAACGTCCTTCTTACGATCGCAAGCAAA
TTAAACTTTAAAAAGGCCCGACGAAGTGAGTGTGAAATAGAAGAAATGGG
TCGTCGTATTAAAAAGATGGAGAAAGAATTGTTTGAAAAGATTGCTCTCC
TAGATGACATGAATGTCCGCAATGAAGAACCTAAAGTCGCAAAAAACAAT
GGAAAACAAGCGATCACTGGTGACGCACCACACGAAAAAGTTGCAATGGT
AGAGCCCAATGTTAGCAGTGAGGTACCAGAGTATTTCGACGAGTCTAACC
ATAATGGAGACATCTCTTGGGATTTGGAGAGTGACGATGGAAATGAAGAA
TATATCCGGGAGAGAGTGGTGACGATCGTCGAATTACCGATGGGGCGATT
GGCAGCTGACAACGATGAGACTGAAACTCGTCCTAGTGAGGCATCAAATG
TCAAACATAGTACCGAGGTTTGTGTCGATGAGCCGTCAACGATTTTACCA
TGTATCAAAGATTGTCCCAACGAGCCAACAGACAATTCACCAAAGGCTAA
AACTAACCTTGTTAGTTATACTTCTGATCAGGGAGACTGTCCAAAAGAAC
ACAATGTACAAATGGATACAACTGCAGCGCCTAGTATTTTACAAAGAGCC
TCATGTAATGATGTAGCTCCTAATTTCAAAACAGAAGAAACTTCCTCTTC
GGATGGAAACAGTTCTGGACAGAATTTCGATTTAACTTCAAAAAAAGTCA
CGAAATCAGCAGATGTGTTGATTCAACATAAGTGCAGTCTCTCTAAAAGA
CACGTAAGTGCCGGAGATGTTAGATCTAGAGAGAATCATGCCACAGCAAG
AGGACATCCACAGCTCCTTAGTGAAAGGAGAAAGAAACTCATTGGTGATG
TAGACGTGACAATTGTCTCTGGTAAACACGAACAGCGTGATGATTCTCGT
CTTCAAAAACAACTGACTGAAGAGATGCAAGCTAAAGAACAACTTCTTGT
TGACAAGCTGCATCTCGAAAAGGCCATGCTTCGGATGCGGGAGATGGAAG
AAAATCTCTCTGAACTCAATAACCGTTACATTCAACTTGACGATCAGTTC
AAAGAGGCGTCGAAAGCTCTCTCAGAAACGAGCAGCAAAAATCGACGGCT
GCAAGACGAGTGCAAGGTGATTAGTGACGAACTAGATGGAACTACGGAAA
GGAAAAGGAAAGAAGAGAAGAAGAGAGCAAAAGGAACTCTCGGTCAACGA
TTTCGGCGGCTTTTCGGCTGCGCTTCTGCACGTAGGGGTGATTACGTCAA
TGAGTCTGAAATCACTGACGTTGATGAATACGTAAGACACATACAATCCA
CGGCGCCATGTTAAGAGCTTGCACGTGAGAAAGAAAAGAAGAAGACATTC
ACCAAAATGAACGTCCTTCTTACGATCGCAAGCAAATTAAACTTTAAAAA
GGCCCGACGAAGTGAGTGTGAAATAGAAGAAATGGGTCGTCGTATTAAAA
AGATGGAGAAAGAATTGTTTGAAAAGATTGCTCTCCTAGATGACATGAAT
GTCCGCAATGAAGAACCTAAAGTCGCAAAAAACAATGGAAAACAAGCGAT
CACTGGTGACGCACCACACGAAAAAGTTGCAATGGTAGAGCCCAATGTTA
GCAGTGAGGTACCAGAGTATTTCGACGAGTCTAACCATAATGGAGACATC
TCTTGGGATTTGGAGAGTGACGATGGAAATGAAGAATATATCCGGGAGAG
AGTGGTGACGATCGTCGAATTACCGATGGGGCGATTGGCAGCTGACAACG
ATGAGACTGAAACTCGTCCTAGTGAGGCATCAAATGTCAAACATAGTACC
GAGGTTTGTGTCGATGAGCCGTCAACGATTTTACCATGTATCAAAGATTG
TCCCAACGAGCCAACAGACAATTCACCAAAGGCTAAAACTAACCTTGTTA
GTTATACTTCTGATCAGGGAGACTGTCCAAAAGAACACAATGTACAAATG
GATACAACTGCAGCGCCTAGTATTTTACAAAGAGCCTCATGTAATGATGT
AGCTCCTAATTTCAAAACAGAAGAAACTTCCTCTTCGGATGGAAACAGTT
CTGGACAGAATTTCGATTTAACTTCAAAAAAAGTCACGAAATCAGCAGAT
GTGTTGATTCAACATAAGTGCAGTCTCTCTAAAAGACACGTAAGTGCCGG
AGATGTTAGATCTAGAGAGAATCATGCCACAGCAAGAGGACATCCACAGC
TCCTTAGTGAAAGGAGAAAGAAACTCATTGGTGATGTAGACGTGACAATT
GTCTCTGGTAAACACGAACAGCGTGATGATTCTCGTCTTCAAAAACAACT
GACTGAAGAGATGCAAGCTAAAGAACAACTTCTTGTTGACAAGCTGCATC
TCGAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00011791-exon-sc0000132-1575043694:355029..355632 | TCONS_00011791-exon-sc0000132-1575043694:355029..355632 | Clytia hemisphaerica | exon |
| TCONS_00011791-exon-sc0000132-1575043694:354313..354753 | TCONS_00011791-exon-sc0000132-1575043694:354313..354753 | Clytia hemisphaerica | exon |
| TCONS_00011791-exon-sc0000132-1575043694:353242..354093 | TCONS_00011791-exon-sc0000132-1575043694:353242..354093 | Clytia hemisphaerica | exon |
| TCONS_00011791-exon-sc0000132-1510915933:355029..355632 | TCONS_00011791-exon-sc0000132-1510915933:355029..355632 | Clytia hemisphaerica | exon |
| TCONS_00011791-exon-sc0000132-1510915933:354313..354753 | TCONS_00011791-exon-sc0000132-1510915933:354313..354753 | Clytia hemisphaerica | exon |
| TCONS_00011791-exon-sc0000132-1510915933:353242..354093 | TCONS_00011791-exon-sc0000132-1510915933:353242..354093 | Clytia hemisphaerica | exon |
| TCONS_00011791-exon-sc0000132-1491911889:355029..355632 | TCONS_00011791-exon-sc0000132-1491911889:355029..355632 | Clytia hemisphaerica | exon |
| TCONS_00011791-exon-sc0000132-1491911889:354313..354753 | TCONS_00011791-exon-sc0000132-1491911889:354313..354753 | Clytia hemisphaerica | exon |
| TCONS_00011791-exon-sc0000132-1491911889:353242..354093 | TCONS_00011791-exon-sc0000132-1491911889:353242..354093 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000132 | supercontig | sc0000132:353242..355632 - |
Blast
The following BLAST results are available for this feature:
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