TCONS_00011789 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011789
Unique NameTCONS_00011789
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1255

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011789 ID=TCONS_00011789|Name=TCONS_00011789|organism=Clytia hemisphaerica|type=transcript|length=1255bp
NAAATCGCTCATTTTGTATTTCCCCCATACGTTTTGTGTGTGCAAGAGTG
GagattcatttttcttttgatatggTGGTTTGAGAGAGAAACGCAAGGTT
GATTTTTgtggaaaagaatttttgaattttatttgttGGTTGATTGGACA
AAATGCCACGATCGTTCTTGGTGAAGAGTAACCTGAAAACAGAGCAACAT
TTCCACGCGAGATCATTGTACGAACAGAAAAACAGATTAGATGATTCAGa
TCACTTTCAACATGTCCAGACGTTCGAACCACGTGCTCACCACTCACCTG
ATGATATTCTCTACCAAGGCAAACGCTCTCCAACCTACGTCGAAATCAAC
GACTATTGGCATCATGGAAAATTCCCGTTCTACGGAAAACACATCTCACG
GTTTTATACTCCACCGGAGAAAGATATAAACTTCAACACGATAAGCCCAC
CTTTGGAGAAACCGCTTATCAAAGAAGAGACGAGACCTGCTCATGTAGAG
AGCCATTTGTATGAGAGGAAACTAGTCGAACGTCACACAAACGAAATTGT
AGTCGTTCATCCATCAGATCATCATATACAGCATCACCCTACTGTAGACT
TAAAAGTCAACTCGGAATTGGAGGACAAAAAATCTCCACCACGCCAACAG
ACCGTTAGCAAAACAGATAAAAACAGTAAAAGTCCACGTCGGTTTTCTTG
CAAATACTGTGAAAAAGACTACATGAGCCTTGGTGCTCTTAAAATGCACA
TACGAACACACACTTTACCTTGTAAATGCAACATTTGTGGCAAGGCTTTC
AGCAGACCGTGGCTTCTGCAAGGACATATTCGAACGCATACGGGTGAGCG
GCCGTTCGGATGTTCATATTGTGGTCGCGCGTTCGCCGATCGCTCGAATT
TACGGGCGCACATTCAAACACATACTCAAGTTAAAAAGTACGAATGCCGC
TTCTGTTCAAAGACTTTTTCGCGAGCCTCACTTCTGAAGAAACACGAGGC
TAATGATTGTCTAGCAAATATTGGTAGACCAGAAACCTGACTCTCTTTCT
CTCCTCACccattttttatatatatgTTGATAATATACGCAAATGACTTT
TTATAATAAAGTAGTCAAAGGAATAGTTTTAAAAAGGTTGTACAtgtatt
atattttttgcaGATATTTTAGTCATAGTTTATAATATTTCattggaaaa
acatttttatataccTTAGCATTTTTAGAAGGTAAAAAAGATACTTTTAA
GGTCA
Run BLAST on NCBI

protein sequence of TCONS_00011789-protein

>TCONS_00011789-protein ID=TCONS_00011789-protein|Name=TCONS_00011789-protein|organism=Clytia hemisphaerica|type=polypeptide|length=295bp
MPRSFLVKSNLKTEQHFHARSLYEQKNRLDDSDHFQHVQTFEPRAHHSPD
DILYQGKRSPTYVEINDYWHHGKFPFYGKHISRFYTPPEKDINFNTISPP
LEKPLIKEETRPAHVESHLYERKLVERHTNEIVVVHPSDHHIQHHPTVDL
KVNSELEDKKSPPRQQTVSKTDKNSKSPRRFSCKYCEKDYMSLGALKMHI
RTHTLPCKCNICGKAFSRPWLLQGHIRTHTGERPFGCSYCGRAFADRSNL
RAHIQTHTQVKKYECRFCSKTFSRASLLKKHEANDCLANIGRPET
Run BLAST on NCBI

transcript from alignment at sc0000132:307962..309475-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011789 ID=TCONS_00011789|Name=TCONS_00011789|organism=Clytia hemisphaerica|type=transcript|length=1514bp|location=Sequence derived from alignment at sc0000132:307962..309475- (Clytia hemisphaerica)
NAAATCGCTCATTTTGTATTTCCCCCATACGTTTTGTGTGTGCAAGAGTG
GAGATTCATTTTTCTTTTGATATGGTGGTTTGAGAGAGAAACGCAAGGTT
GATTTTTGTGGAAAAGAATTTTTGAATTTTATTTGTTGGTTGATTGGACA
AAATGCCACGATCGTTCTTGGTGAAGAGTAACCTGAAAACAGAGCAACAT
TTCCACGCGAGATCATTGTACGAACAGAAAAACAGATTAGATGATTCAGG
TAACTTTTTTTTCTGTTTCTCATTTGTCTCTTCTTTTATTAATTTTTAAT
ATTTTTTTATTTTTGTGAATGATACTGTGCTCTATCTCTGAGAAACTTTT
CTTTATAACATTATTAGCAAATCACAAAACGAATCGACCTAATTTATTAC
AAATTTTTCTGATTTTCAACTTCAATAATTTATATTTTATATTTCTTCTT
TGAGAGTTCTGCTTCACTTTGCGTTCGCTTTTTATGATTTCTGTTTTTGT
TTCTTTAGATCACTTTCAACATGTCCAGACGTTCGAACCACGTGCTCACC
ACTCACCTGATGATATTCTCTACCAAGGCAAACGCTCTCCAACCTACGTC
GAAATCAACGACTATTGGCATCATGGAAAATTCCCGTTCTACGGAAAACA
CATCTCACGGTTTTATACTCCACCGGAGAAAGATATAAACTTCAACACGA
TAAGCCCACCTTTGGAGAAACCGCTTATCAAAGAAGAGACGAGACCTGCT
CATGTAGAGAGCCATTTGTATGAGAGGAAACTAGTCGAACGTCACACAAA
CGAAATTGTAGTCGTTCATCCATCAGATCATCATATACAGCATCACCCTA
CTGTAGACTTAAAAGTCAACTCGGAATTGGAGGACAAAAAATCTCCACCA
CGCCAACAGACCGTTAGCAAAACAGATAAAAACAGTAAAAGTCCACGTCG
GTTTTCTTGCAAATACTGTGAAAAAGACTACATGAGCCTTGGTGCTCTTA
AAATGCACATACGAACACACACTTTACCTTGTAAATGCAACATTTGTGGC
AAGGCTTTCAGCAGACCGTGGCTTCTGCAAGGACATATTCGAACGCATAC
GGGTGAGCGGCCGTTCGGATGTTCATATTGTGGTCGCGCGTTCGCCGATC
GCTCGAATTTACGGGCGCACATTCAAACACATACTCAAGTTAAAAAGTAC
GAATGCCGCTTCTGTTCAAAGACTTTTTCGCGAGCCTCACTTCTGAAGAA
ACACGAGGCTAATGATTGTCTAGCAAATATTGGTAGACCAGAAACCTGAC
TCTCTTTCTCTCCTCACCCATTTTTTATATATATGTTGATAATATACGCA
AATGACTTTTTATAATAAAGTAGTCAAAGGAATAGTTTTAAAAAGGTTGT
ACATGTATTATATTTTTTGCAGATATTTTAGTCATAGTTTATAATATTTC
ATTGGAAAAACATTTTTATATACCTTAGCATTTTTAGAAGGTAAAAAAGA
TACTTTTAAGGTCA

Coding sequence (CDS) from alignment at sc0000132:307962..309475-

>TCONS_00011789 ID=TCONS_00011789|Name=TCONS_00011789|organism=Clytia hemisphaerica|type=CDS|length=1776bp|location=Sequence derived from alignment at sc0000132:307962..309475- (Clytia hemisphaerica)
ATCACTTTCAACATGTCCAGACGTTCGAACCACGTGCTCACCACTCACCT
GATGATATTCTCTACCAAGGCAAACGCTCTCCAACCTACGTCGAAATCAA
CGACTATTGGCATCATGGAAAATTCCCGTTCTACGGAAAACACATCTCAC
GGTTTTATACTCCACCGGAGAAAGATATAAACTTCAACACGATAAGCCCA
CCTTTGGAGAAACCGCTTATCAAAGAAGAGACGAGACCTGCTCATGTAGA
GAGCCATTTGTATGAGAGGAAACTAGTCGAACGTCACACAAACGAAATTG
TAGTCGTTCATCCATCAGATCATCATATACAGCATCACCCTACTGTAGAC
TTAAAAGTCAACTCGGAATTGGAGGACAAAAAATCTCCACCACGCCAACA
GACCGTTAGCAAAACAGATAAAAACAGTAAAAGTCCACGTCGGTTTTCTT
GCAAATACTGTGAAAAAGACTACATGAGCCTTGGTGCTCTTAAAATGCAC
ATACGAACACACACTTTACCTTGTAAATGCAACATTTGTGGCAAGGCTTT
CAGCAGACCGTGGCTTCTGCAAGGACATATTCGAACGCATACGGGTGAGC
GGCCGTTCGGATGTTCATATTGTGGTCGCGCGTTCGCCGATCGCTCGAAT
TTACGGGCGCACATTCAAACACATACTCAAGTTAAAAAGTACGAATGCCG
CTTCTGTTCAAAGACTTTTTCGCGAGCCTCACTTCTGAAGAAACACGAGG
CTAATGATTGTCTAGCAAATATTGGTAGACCAGAAACCTGAATGCCACGA
TCGTTCTTGGTGAAGAGTAACCTGAAAACAGAGCAACATTTCCACGCGAG
ATCATTGTACGAACAGAAAAACAGATTAGATGATTCAGATCACTTTCAAC
ATGTCCAGACGTTCGAACCACGTGCTCACCACTCACCTGATGATATTCTC
TACCAAGGCAAACGCTCTCCAACCTACGTCGAAATCAACGACTATTGGCA
TCATGGAAAATTCCCGTTCTACGGAAAACACATCTCACGGTTTTATACTC
CACCGGAGAAAGATATAAACTTCAACACGATAAGCCCACCTTTGGAGAAA
CCGCTTATCAAAGAAGAGACGAGACCTGCTCATGTAGAGAGCCATTTGTA
TGAGAGGAAACTAGTCGAACGTCACACAAACGAAATTGTAGTCGTTCATC
CATCAGATCATCATATACAGCATCACCCTACTGTAGACTTAAAAGTCAAC
TCGGAATTGGAGGACAAAAAATCTCCACCACGCCAACAGACCGTTAGCAA
AACAGATAAAAACAGTAAAAGTCCACGTCGGTTTTCTTGCAAATACTGTG
AAAAAGACTACATGAGCCTTGGTGCTCTTAAAATGCACATACGAACACAC
ACTTTACCTTGTAAATGCAACATTTGTGGCAAGGCTTTCAGCAGACCGTG
GCTTCTGCAAGGACATATTCGAACGCATACGGGTGAGCGGCCGTTCGGAT
GTTCATATTGTGGTCGCGCGTTCGCCGATCGCTCGAATTTACGGGCGCAC
ATTCAAACACATACTCAAGTTAAAAAGTACGAATGCCGCTTCTGTTCAAA
GACTTTTTCGCGAGCCTCACTTCTGAAGAAACACGAGGCTAATGATTGTC
TAGCAAATATTGGTAGACCAGAAACCTGAATGCCACGATCGTTCTTGGTG
AAGAGTAACCTGAAAACAGAGCAACATTTCCACGCGAGATCATTGTACGA
ACAGAAAAACAGATTAGATGATTCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006612XLOC_006612Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011789-proteinTCONS_00011789-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011789-exon-sc0000132-1575043694:309227..309475TCONS_00011789-exon-sc0000132-1575043694:309227..309475Clytia hemisphaericaexon
TCONS_00011789-exon-sc0000132-1575043694:307962..308967TCONS_00011789-exon-sc0000132-1575043694:307962..308967Clytia hemisphaericaexon
TCONS_00011789-exon-sc0000132-1510915933:309227..309475TCONS_00011789-exon-sc0000132-1510915933:309227..309475Clytia hemisphaericaexon
TCONS_00011789-exon-sc0000132-1510915933:307962..308967TCONS_00011789-exon-sc0000132-1510915933:307962..308967Clytia hemisphaericaexon
TCONS_00011789-exon-sc0000132-1491911889:309227..309475TCONS_00011789-exon-sc0000132-1491911889:309227..309475Clytia hemisphaericaexon
TCONS_00011789-exon-sc0000132-1491911889:307962..308967TCONS_00011789-exon-sc0000132-1491911889:307962..308967Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000132supercontigsc0000132:307962..309475 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.13567	0	0.0742115	0	83.6521	54.3964	6.62863	8.64368	1.61211	5.35214	4.94811	1.26242	4.68271	3.2459	4.98403	5.02001	11.7007	6.87666	1.25772	1.12776	8.7725	8.62411	1.4142	1.21656	3.74271	6.25235	1.90653	1.59622	4.24734	3.18987
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
IPR013083Znf_RING/FYVE/PHD
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
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BLAST of TCONS_00011789 vs. Swiss-Prot (Human)
Match: SNAI2 (Zinc finger protein SNAI2 OS=Homo sapiens GN=SNAI2 PE=1 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 5.807e-57
Identity = 86/113 (76.11%), Postives = 100/113 (88.50%), Query Frame = 3 
Query:  672 NSKSPRRFSCKYCEKDYMSLGALKMHIRTHTLPCKCNICGKAFSRPWLLQGHIRTHTGERPFGCSYCGRAFADRSNLRAHIQTHTQVKKYECRFCSKTFSRASLLKKHEANDC 1010
            +++S + FSCKYC+K+Y+SLGALKMHIRTHTLPC C ICGKAFSRPWLLQGHIRTHTGE+PF C +C RAFADRSNLRAH+QTH+ VKKY+C+ CSKTFSR SLL KHE + C
Sbjct:  152 DAQSRKSFSCKYCDKEYVSLGALKMHIRTHTLPCVCKICGKAFSRPWLLQGHIRTHTGEKPFSCPHCNRAFADRSNLRAHLQTHSDVKKYQCKNCSKTFSRMSLLHKHEESGC 264
The following BLAST results are available for this feature:
BLAST of TCONS_00011789 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SNAI25.807e-5776.11Zinc finger protein SNAI2 OS=Homo sapiens GN=SNAI2... [more]
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