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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011788 ID=TCONS_00011788|Name=TCONS_00011788|organism=Clytia hemisphaerica|type=transcript|length=4854bpRun BLAST on NCBI transcript from alignment at sc0000132:301363..338612- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00011788 ID=TCONS_00011788|Name=TCONS_00011788|organism=Clytia hemisphaerica|type=transcript|length=37250bp|location=Sequence derived from alignment at sc0000132:301363..338612- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
No biomaterial libraries express this feature.
Blast
BLAST of TCONS_00011788 vs. Swiss-Prot (Human)
Match: HECW2 (E3 ubiquitin-protein ligase HECW2 OS=Homo sapiens GN=HECW2 PE=1 SV=2) HSP 1 Score: 128.257 bits (321), Expect = 2.184e-29 Identity = 88/303 (29.04%), Postives = 152/303 (50.17%), Query Frame = 1
Query: 136 SLANLNEVEDINPLRRAYSENHLNNTTVINEGPSTLAVSTNRTNVGEK--IIITWNLSVAPSQKDWLGLYYAEDNNEV-LIDKREKQIGKSKIGSYTWYISKEFKYKE-VINVCVFKYFHGGLVKFIASTNVFTICCPLDMLPAQTTPPMAIPGVDD--LLDVLISGLKAADLKKGFFGKPNPYIKINVLPRVRHLSAGQKHHGLQWKSSAKQNSSDPVWDEKEFKVSATAADLLEIEVRNK--STRP-ASKFLGKLVFPLSKIIESCGFSRAKRITQYLIGRTT-ADKIQGTFTFVINVKKS 1014
SLA + + + L+RA S+ L V +E S+L S +G+ +II W++ DW+GLY+ ++N+ D + + + ++ G W I + E I +C FKY+HG A+T T+ P M+ A+ A + L+ +S L+A LKKG F P+PY+K+++ P + HHG + +S+ N+++P+W +++ A D+LEIE+++K +RP +FLGKL P+ +++E ++ Y +GR AD + G F + V S
Sbjct: 30 SLAAQSSMPENMTLQRANSDTDL----VTSESRSSLTASMYEYTLGQAQNLIIFWDIKEEVDPSDWIGLYHIDENSPANFWDSKNRGVTGTQKGQIVWRIEPGPYFMEPEIKIC-FKYYHGISGALRATTPCITVKNPAVMMGAEGMEGGASGNLHSRKLVSFTLSDLRAVGLKKGMFFNPDPYLKMSIQPGKKSSFPTCAHHGQERRSTIISNTTNPIWHREKYSFFALLTDVLEIEIKDKFAKSRPIIKRFLGKLTIPVQRLLERQAI--GDQMLSYNLGRRLPADHVSGYLQFKVEVTSS 325 The following BLAST results are available for this feature:
BLAST of TCONS_00011788 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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