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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011780 ID=TCONS_00011780|Name=TCONS_00011780|organism=Clytia hemisphaerica|type=transcript|length=1541bp
TAAAAACACTAAAGTTTAGATTTCAAATCTTATTTGAAACTTTATGATTG
TTTAATCTGATAACATCAACTGAGAGAGTTTCATCGCTAGGAggaaatga
aatgtttttggaTGCTCTCAAAGAATTGCTTGGAGGGAATTAGTTTGTGC
GTTGATTAGTGATTTAGAACTCAGGATAATTAAGGGGATGATAAAGTGAG
CGACTTTCACGCCATGGAAAAACTTACGCCAGTACTGATTGCGGTGGGCG
TCTGCTTCGGTTTCATTCTCATCATATTTGTTCTGATTGTCCGAAAATAC
GTTCAGTTGGTTCGGACAGAAGAGTCGTTTCCCGGGTACAATGCGAGGAA
CAATAAATCGACTTCTTCTTCGCACCCCTTCATATCATCTTTCTTCCCTT
TCTTCGACGTGACGAACGTGAATCCACAGATGCACACTCAGAGAGCACGA
ACGTGGAAcctgaagaaaacaaaaagtcaaaaaccgTTGCACAGGGAGCA
AAGGGGGCGTTTCAATAGTATGCCGAACCTCAACCGTATCAGGAACGACA
AATTCCCTTTAAATACGGATGACAACAAAAGTGTCCTCTCGGACCATGAA
GATGACCAATGTGACGAGACCGAAACGCTAGTGATGACGTCAGAAGAACT
TGATGAAGGAGAGGGAAGAGTGAAAAGTGGGAGCGTTCTTTTGCATGATC
GAGTACGTTCACTGTCCGGGAAAAGCATTTCGACAATCACGACACAAAGG
AACGCGTCTTTCAGCAAAGAGCAAGAAAACCCCTCAAAAATACTCCTCTA
CTGCAGAACAAACGGTATGATTGAGTTCACTACACATTATTTCTTCCCTG
AGAGCTTGTTAGAAGTCCACATATGGCGCGTCCATGGCTTCACCACCAAA
GAACAAACACTGGATTTGAATGTTCACGTCCGCGCATTTTTGGAACCCGG
AAAACTCCAAAAAACGGACACTGGCTCGCAGATTGGACACACGCCATTCT
TTAATGAGAAAATTCAATTTGAGGGAATTCATGAAACGGACTTGAAGAAA
TATCGGTTGGTTTTGAAAGCGTATAATAAAGAGAAACGAAAAGCGAAAGA
ACTTTTGGGAATTGTAAACATGGATTTAACTTGgattaattattttgatg
acaGCACTGAAGTTCATCATTCACCTTTgttcgatttttagaaaatattt
tcgatCTACAgcgtgtccctaattaaagtatcgagtttgaacatgcgatt
gagtagaaaagtttgtgtgtgttatcgctaaaatataagaacgttctcca
tcttattacaaaaggtagttacaacgtataaattaatcgtaatgccaaag
aaaaaagagggagagcttaaaatacaattttgtgaacacgcacataaaac
tttctactcatagttgtgtttcgactcgatactttaattagggacaccct
gtacttcCCAATAAAATACTGTCAGTCTAGTTGATTGCTAAAAACAAACA
TTTCACCAAGAGCATTATTAATATAGACTGTTATTCAGGAC Run BLAST on NCBI protein sequence of TCONS_00011780-protein >TCONS_00011780-protein ID=TCONS_00011780-protein|Name=TCONS_00011780-protein|organism=Clytia hemisphaerica|type=polypeptide|length=325bp
MEKLTPVLIAVGVCFGFILIIFVLIVRKYVQLVRTEESFPGYNARNNKST
SSSHPFISSFFPFFDVTNVNPQMHTQRARTWNLKKTKSQKPLHREQRGRF
NSMPNLNRIRNDKFPLNTDDNKSVLSDHEDDQCDETETLVMTSEELDEGE
GRVKSGSVLLHDRVRSLSGKSISTITTQRNASFSKEQENPSKILLYCRTN
GMIEFTTHYFFPESLLEVHIWRVHGFTTKEQTLDLNVHVRAFLEPGKLQK
TDTGSQIGHTPFFNEKIQFEGIHETDLKKYRLVLKAYNKEKRKAKELLGI
VNMDLTWINYFDDSTEVHHSPLFDF Run BLAST on NCBI transcript from alignment at sc0000132:265973..269831- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00011780 ID=TCONS_00011780|Name=TCONS_00011780|organism=Clytia hemisphaerica|type=transcript|length=3859bp|location=Sequence derived from alignment at sc0000132:265973..269831- (Clytia hemisphaerica)
TAAAAACACTAAAGTTTAGATTTCAAATCTTATTTGAAACTTTATGATTG
TTTAATCTGATAACATCAACTGAGAGAGTTTCATCGCTAGGAGGAAATGA
AATGTTTTTGGATGCTCTCAAAGAATTGCTTGGAGGGAATTAGTTTGTGC
GTTGATTAGTGATTTAGAACTCAGGATAATTAAGGGGATGATAAAGTGAG
CGACTTTCACGCCATGGAAAAACTTACGCCAGGTAAGGTTTTGATTTCAC
ATTACGATCTATTTTTAAATGATATCGATAAAAGGACAGTGAAAGCATTA
CAACCTACAACCTTCTTCCCAAGGTAGGTCAGTTTGGTCTAACTGTTTGA
AATACTAAATTCTAAGTAGAGACATTATATTCCTCTACATACTTATAAAC
TGTTAGACTTCCGTGTGAGTATGTCCAGTTTATAAGTCGGCTACTTCGCC
AAATGCTGTAGCGAGTACCTCACCAAAAACCGGGATTTTTTATCCCGTTT
CTTAGTGAGTTCCACTTTGACGATTTTCGAAAAATAGAAGCCTTTCAAGT
GTTTTGACGCAAATTCTATTTTTTTGATACTGCAGGAGCTTCAAACGTTT
AAAGTGACGTCAAAAAATCGAATGTTTAGAGCCCGAAAACCTGGGCTCAA
AACATTCGAAAAAGTCGTAAAGTGGAATAGACGTTACAGCGTAGAAAAAA
AGCCGTGACGTCTAGTATAGGCTACAAATGCTGGATAAATAAGTTATTTA
ATACACCTTTCCCGAGTTTATTTCGACTTTTTGAAAAAACACTATTCCAA
AACCCTGCTCTACTTGCATTTAATTTAGAAAGATTCTACTACGAAATACG
AAATCAAAAATAAATAATTATGTTAAAAGGTTCTTGAGATATTTCAATTT
TAAAGTTTTTTCTTAAACAAAAGTATCCCATGGAAACGACATAGAAACGA
GGCCCGNACGAAATACGAAATCAAAAAAAAAAAATTATGTTAAAAGGTTC
TTGAGATATTTCAATTTTAAAGTTTTTTCTTAAACAAAAGTATCCCATGG
AAACGACATAGAAACTAGGCCCGGTAGGATAAAATATTTTTTAAGAGAGG
TTTGACTGTAAAAACAAAGGAATTAAAACAGCCATAAAAAAGAAATGGAA
AAAGCTTTTGATCTCAAATTTTCAGAATGACTTTGTATCACCAAAAGCTT
CAAAAATATCAAGTTCNCTTTTGATCTCAAATTTTCAGAATGACTTTGTA
TCACCAAAAGCTTCAAAAATCGTTTCAAACTGGAGAGGTTGAAAAAAAAT
TGATAAACTCGGGAAAAGTGTATACTATTTCATTTCCATTTTACAGTACT
GATTGCGGTGGGCGTCTGCTTCGGTTTCATTCTCATCATATTTGTTCTGA
TTGTCCGAAAATACGTTCAGTTGGTTCGGACAGAAGAGTCGTTTCCCGGG
TACAATGCGAGGAACAATAAATCGACTTCTTCTTCGCACCCCTTCATATC
ATCTTTCTTCCCTTTCTTCGACGTGACGAACGTGAATCCACAGATGCACA
CTCAGAGAGCACGAACGTGGAACCTGAAGAAAACAAAAAGTCAAAAACCG
TTGCACAGGGTAAGAATCGCAAAAATTACAAATGCGAAAACCTTTTGATA
GAATTTGAATAAGATTGAGTTTTTGTACTCGTTTAAAAGACAATCTTGAG
TTGGGTATTATAGTATGAAAAATCTTTGATAGAAATTCAAAAATGAAAAT
AAAACACTTTCCCACAGGAGCAAAGGGGGCGTTTCAATAGTATGCCGAAC
CTCAACCGTATCAGGAACGACAAATTCCCTTTAAATACGGATGACAACAA
AAGTGTCCTCTCGGACCATGAAGATGACCAATGTGACGAGACCGAAACGC
TAGTGATGACGTCAGAAGAACTTGATGAAGGAGAGGGAAGAGTGAAAAGT
GGGAGCGTTCTTTTGCATGGTGAGTGTTCTTGAGTTTCAAAAGCTTTTTC
TTCTTAAAAATCTGAACTCATGCCTATAATTTTCATTGCTGAAACCACGT
GGACGAGCTTTACTGATCCTACATTTCAAAAAATTCAAATGGTGAAGGTG
AAGTGGCACATGCTTTTCAGGTAGGGCAAACACACCAAAATAGAAAAATC
TATCCCTCGTTAGGTACATTATTAGAAGAATTTGAGAAAAAGGTGAAAAA
CTTTGAGAAAATTCTGGCGAATTTCACTTTCACTGTTTGCAACATTTATC
AAAATTTTCACAAAAGTGAGTCCCGCGTAGGGTCCATCGGAAGGCAAGGG
TAGTAACCCCCCCCCGGGTCATAATGTTATGGCCTCCATCAAAAACTCAG
TTAGGAGCTTTTTGTTTACACATTCCAAGACCTTAACCTTTTCAGTCCCA
GAGAACCGCATTGCGGGTTTCTCTGTGAACAAACTTCAACGGGCTACAGT
ATATCTCCAGAACTAAAAGATTTCCAGAACCCTCGTAGCTACCATTAAAA
AGAGGATGAAATTTTAAAGAAAAAAGTTGGTTTTGGGGCACCCTTACCCC
ATGACTGATGTCTTGCTGACGCATGACTTCGGTATGAAACTTTTTAATTT
TTCTTTCAAAAAGTGCAAAGCTCTGGGACTGAAAGGGTTAAAATGTTCTT
AACTTGTTCTTAACATGTTGGGCATCTAAGTTTCATGTTCTTATATAGTT
TGTTCTTATAAAAAACGTGTAATATCCTGAAACTTTATACAATAAATTAT
AGAATATGGAAACTTACATTATTTACTCAAAGACTGTTAGACTTAACATT
GATTACATAGTTTTAAAAGTTTGAAGATTAATTTGTGTAGATTCCTTGAA
CTATAGACTTTTGAATATCCTCTCCCTTTTCATTTTGGTGGAAAAAAGTT
GTTGCGGTTGCTTTAAACATTTCAATAAACACTTTAAAAATACTTATCCT
GATGAAGTTTTTAAGTGCATAATATTTTATGAATTAAAAACAGCCTTTAT
CATATTTCGTTCTAGATCGAGTACGTTCACTGTCCGGGAAAAGCATTTCG
ACAATCACGACACAAAGGAACGCGTCTTTCAGCAAAGAGCAAGAAAACCC
CTCAAAAATACTCCTCTACTGCAGAACAAACGGTATGATTGAGTTCACTA
CACATTATTTCTTCCCTGAGAGCTTGTTAGAAGTCCACATATGGCGCGTC
CATGGCTTCACCACCAAAGAACAAACACTGGATTTGAATGTTCACGTCCG
CGCATTTTTGGAACCCGGAAAACTCCAAAAAACGGACACTGGCTCGCAGA
TTGGACACACGCCATTCTTTAATGAGAAAATTCAATTTGAGGGAATTCAT
GAAACGGACTTGAAGAAATATCGGTTGGTTTTGAAAGCGTATAATAAAGA
GAAACGAAAAGCGAAAGAACTTTTGGGAATTGTAAACATGGATTTAACTT
GGATTAATTATTTTGATGACAGCACTGAAGTTCATCATTCACCTTTGTTC
GATTTTTAGAAAATATTTTCGATCTACAGCGTGTCCCTAATTAAAGTATC
GAGTTTGAACATGCGATTGAGTAGAAAAGTTTGTGTGTGTTATCGCTAAA
ATATAAGAACGTTCTCCATCTTATTACAAAAGGTAGTTACAACGTATAAA
TTAATCGTAATGCCAAAGAAAAAAGAGGGAGAGCTTAAAATACAATTTTG
TGAACACGCACATAAAACTTTCTACTCATAGTTGTGTTTCGACTCGATAC
TTTAATTAGGGACACCCTGTACTTCCCAATAAAATACTGTCAGTCTAGTT
GATTGCTAAAAACAAACATTTCACCAAGAGCATTATTAATATAGACTGTT
ATTCAGGAC Coding sequence (CDS) from alignment at sc0000132:265973..269831- >TCONS_00011780 ID=TCONS_00011780|Name=TCONS_00011780|organism=Clytia hemisphaerica|type=CDS|length=3912bp|location=Sequence derived from alignment at sc0000132:265973..269831- (Clytia hemisphaerica)
ATCGAGTACGTTCACTGTCCGGGAAAAGCATTTCGACAATCACGACACAA
AGGAACGCGTCTTTCAGCAAAGAGCAAGAAAACCCCTCAAAAATACTCCT
CTACTGCAGAACAAACGGTATGATTGAGTTCACTACACATTATTTCTTCC
CTGAGAGCTTGTTAGAAGTCCACATATGGCGCGTCCATGGCTTCACCACC
AAAGAACAAACACTGGATTTGAATGTTCACGTCCGCGCATTTTTGGAACC
CGGAAAACTCCAAAAAACGGACACTGGCTCGCAGATTGGACACACGCCAT
TCTTTAATGAGAAAATTCAATTTGAGGGAATTCATGAAACGGACTTGAAG
AAATATCGGTTGGTTTTGAAAGCGTATAATAAAGAGAAACGAAAAGCGAA
AGAACTTTTGGGAATTGTAAACATGGATTTAACTTGGATTAATTATTTTG
ATGACAGCACTGAAGTTCATCATTCACCTTTGTTCGATTTTTAGGAGCAA
AGGGGGCGTTTCAATAGTATGCCGAACCTCAACCGTATCAGGAACGACAA
ATTCCCTTTAAATACGGATGACAACAAAAGTGTCCTCTCGGACCATGAAG
ATGACCAATGTGACGAGACCGAAACGCTAGTGATGACGTCAGAAGAACTT
GATGAAGGAGAGGGAAGAGTGAAAAGTGGGAGCGTTCTTTTGCATGTACT
GATTGCGGTGGGCGTCTGCTTCGGTTTCATTCTCATCATATTTGTTCTGA
TTGTCCGAAAATACGTTCAGTTGGTTCGGACAGAAGAGTCGTTTCCCGGG
TACAATGCGAGGAACAATAAATCGACTTCTTCTTCGCACCCCTTCATATC
ATCTTTCTTCCCTTTCTTCGACGTGACGAACGTGAATCCACAGATGCACA
CTCAGAGAGCACGAACGTGGAACCTGAAGAAAACAAAAAGTCAAAAACCG
TTGCACAGGATGGAAAAACTTACGCCAGATCGAGTACGTTCACTGTCCGG
GAAAAGCATTTCGACAATCACGACACAAAGGAACGCGTCTTTCAGCAAAG
AGCAAGAAAACCCCTCAAAAATACTCCTCTACTGCAGAACAAACGGTATG
ATTGAGTTCACTACACATTATTTCTTCCCTGAGAGCTTGTTAGAAGTCCA
CATATGGCGCGTCCATGGCTTCACCACCAAAGAACAAACACTGGATTTGA
ATGTTCACGTCCGCGCATTTTTGGAACCCGGAAAACTCCAAAAAACGGAC
ACTGGCTCGCAGATTGGACACACGCCATTCTTTAATGAGAAAATTCAATT
TGAGGGAATTCATGAAACGGACTTGAAGAAATATCGGTTGGTTTTGAAAG
CGTATAATAAAGAGAAACGAAAAGCGAAAGAACTTTTGGGAATTGTAAAC
ATGGATTTAACTTGGATTAATTATTTTGATGACAGCACTGAAGTTCATCA
TTCACCTTTGTTCGATTTTTAGGAGCAAAGGGGGCGTTTCAATAGTATGC
CGAACCTCAACCGTATCAGGAACGACAAATTCCCTTTAAATACGGATGAC
AACAAAAGTGTCCTCTCGGACCATGAAGATGACCAATGTGACGAGACCGA
AACGCTAGTGATGACGTCAGAAGAACTTGATGAAGGAGAGGGAAGAGTGA
AAAGTGGGAGCGTTCTTTTGCATGTACTGATTGCGGTGGGCGTCTGCTTC
GGTTTCATTCTCATCATATTTGTTCTGATTGTCCGAAAATACGTTCAGTT
GGTTCGGACAGAAGAGTCGTTTCCCGGGTACAATGCGAGGAACAATAAAT
CGACTTCTTCTTCGCACCCCTTCATATCATCTTTCTTCCCTTTCTTCGAC
GTGACGAACGTGAATCCACAGATGCACACTCAGAGAGCACGAACGTGGAA
CCTGAAGAAAACAAAAAGTCAAAAACCGTTGCACAGGATGGAAAAACTTA
CGCCAGATCGAGTACGTTCACTGTCCGGGAAAAGCATTTCGACAATCACG
ACACAAAGGAACGCGTCTTTCAGCAAAGAGCAAGAAAACCCCTCAAAAAT
ACTCCTCTACTGCAGAACAAACGGTATGATTGAGTTCACTACACATTATT
TCTTCCCTGAGAGCTTGTTAGAAGTCCACATATGGCGCGTCCATGGCTTC
ACCACCAAAGAACAAACACTGGATTTGAATGTTCACGTCCGCGCATTTTT
GGAACCCGGAAAACTCCAAAAAACGGACACTGGCTCGCAGATTGGACACA
CGCCATTCTTTAATGAGAAAATTCAATTTGAGGGAATTCATGAAACGGAC
TTGAAGAAATATCGGTTGGTTTTGAAAGCGTATAATAAAGAGAAACGAAA
AGCGAAAGAACTTTTGGGAATTGTAAACATGGATTTAACTTGGATTAATT
ATTTTGATGACAGCACTGAAGTTCATCATTCACCTTTGTTCGATTTTTAG
GAGCAAAGGGGGCGTTTCAATAGTATGCCGAACCTCAACCGTATCAGGAA
CGACAAATTCCCTTTAAATACGGATGACAACAAAAGTGTCCTCTCGGACC
ATGAAGATGACCAATGTGACGAGACCGAAACGCTAGTGATGACGTCAGAA
GAACTTGATGAAGGAGAGGGAAGAGTGAAAAGTGGGAGCGTTCTTTTGCA
TGTACTGATTGCGGTGGGCGTCTGCTTCGGTTTCATTCTCATCATATTTG
TTCTGATTGTCCGAAAATACGTTCAGTTGGTTCGGACAGAAGAGTCGTTT
CCCGGGTACAATGCGAGGAACAATAAATCGACTTCTTCTTCGCACCCCTT
CATATCATCTTTCTTCCCTTTCTTCGACGTGACGAACGTGAATCCACAGA
TGCACACTCAGAGAGCACGAACGTGGAACCTGAAGAAAACAAAAAGTCAA
AAACCGTTGCACAGGATGGAAAAACTTACGCCAGATCGAGTACGTTCACT
GTCCGGGAAAAGCATTTCGACAATCACGACACAAAGGAACGCGTCTTTCA
GCAAAGAGCAAGAAAACCCCTCAAAAATACTCCTCTACTGCAGAACAAAC
GGTATGATTGAGTTCACTACACATTATTTCTTCCCTGAGAGCTTGTTAGA
AGTCCACATATGGCGCGTCCATGGCTTCACCACCAAAGAACAAACACTGG
ATTTGAATGTTCACGTCCGCGCATTTTTGGAACCCGGAAAACTCCAAAAA
ACGGACACTGGCTCGCAGATTGGACACACGCCATTCTTTAATGAGAAAAT
TCAATTTGAGGGAATTCATGAAACGGACTTGAAGAAATATCGGTTGGTTT
TGAAAGCGTATAATAAAGAGAAACGAAAAGCGAAAGAACTTTTGGGAATT
GTAAACATGGATTTAACTTGGATTAATTATTTTGATGACAGCACTGAAGT
TCATCATTCACCTTTGTTCGATTTTTAGGAGCAAAGGGGGCGTTTCAATA
GTATGCCGAACCTCAACCGTATCAGGAACGACAAATTCCCTTTAAATACG
GATGACAACAAAAGTGTCCTCTCGGACCATGAAGATGACCAATGTGACGA
GACCGAAACGCTAGTGATGACGTCAGAAGAACTTGATGAAGGAGAGGGAA
GAGTGAAAAGTGGGAGCGTTCTTTTGCATGTACTGATTGCGGTGGGCGTC
TGCTTCGGTTTCATTCTCATCATATTTGTTCTGATTGTCCGAAAATACGT
TCAGTTGGTTCGGACAGAAGAGTCGTTTCCCGGGTACAATGCGAGGAACA
ATAAATCGACTTCTTCTTCGCACCCCTTCATATCATCTTTCTTCCCTTTC
TTCGACGTGACGAACGTGAATCCACAGATGCACACTCAGAGAGCACGAAC
GTGGAACCTGAAGAAAACAAAAAGTCAAAAACCGTTGCACAGGATGGAAA
AACTTACGCCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00011780-exon-sc0000132-1575043694:269600..269831 | TCONS_00011780-exon-sc0000132-1575043694:269600..269831 | Clytia hemisphaerica | exon |
| TCONS_00011780-exon-sc0000132-1575043694:268223..268485 | TCONS_00011780-exon-sc0000132-1575043694:268223..268485 | Clytia hemisphaerica | exon |
| TCONS_00011780-exon-sc0000132-1575043694:267863..268064 | TCONS_00011780-exon-sc0000132-1575043694:267863..268064 | Clytia hemisphaerica | exon |
| TCONS_00011780-exon-sc0000132-1575043694:265973..266816 | TCONS_00011780-exon-sc0000132-1575043694:265973..266816 | Clytia hemisphaerica | exon |
| TCONS_00011780-exon-sc0000132-1510915933:269600..269831 | TCONS_00011780-exon-sc0000132-1510915933:269600..269831 | Clytia hemisphaerica | exon |
| TCONS_00011780-exon-sc0000132-1510915933:268223..268485 | TCONS_00011780-exon-sc0000132-1510915933:268223..268485 | Clytia hemisphaerica | exon |
| TCONS_00011780-exon-sc0000132-1510915933:267863..268064 | TCONS_00011780-exon-sc0000132-1510915933:267863..268064 | Clytia hemisphaerica | exon |
| TCONS_00011780-exon-sc0000132-1510915933:265973..266816 | TCONS_00011780-exon-sc0000132-1510915933:265973..266816 | Clytia hemisphaerica | exon |
| TCONS_00011780-exon-sc0000132-1491911889:269600..269831 | TCONS_00011780-exon-sc0000132-1491911889:269600..269831 | Clytia hemisphaerica | exon |
| TCONS_00011780-exon-sc0000132-1491911889:268223..268485 | TCONS_00011780-exon-sc0000132-1491911889:268223..268485 | Clytia hemisphaerica | exon |
| TCONS_00011780-exon-sc0000132-1491911889:267863..268064 | TCONS_00011780-exon-sc0000132-1491911889:267863..268064 | Clytia hemisphaerica | exon |
| TCONS_00011780-exon-sc0000132-1491911889:265973..266816 | TCONS_00011780-exon-sc0000132-1491911889:265973..266816 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000132 | supercontig | sc0000132:265973..269831 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000008 | C2_dom |
Blast
The following BLAST results are available for this feature:
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