TCONS_00011762 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00011762
Unique Name	TCONS_00011762
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	794

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000132:198670..200435-
coding sequence from alignment at sc0000132:198670..200435-

transcript sequence

>TCONS_00011762 ID=TCONS_00011762|Name=TCONS_00011762|organism=Clytia hemisphaerica|type=transcript|length=794bp
GTTGATCGTCTGCTGTATTACTTTTATACTCACAGTTATCTGACCAAGCA
AGAATGAGACAGCCTCCTTTCAAATAATAGAATATAAAGGAATGAAACTT
AAGAATATTGTGATTAAACCAATCgtttcatttttcaacaaaaagtagAA
CAGAATAACAACACATCATCTAAAAACACAAATACCTAGAGAAGTCAGAT
CAGATATGGTGATTACCAATAAAGAAGTAGGTGTCAATGACATGGTCCTC
TTGGATCCTGTCACCGAAGATAATCTTCTCCACAATCTTCAGATTCGCTT
CAATGAATCCAAAATATACACATACATCGGTGATGTGGTTGTGTCTGTCA
ACCCTTACAAATCACTCCCCATCTACACCAGAGAATACATGCAAGAATAC
AGAACTAAAAATATCTTCGAAGTTCCTCCTCATATATTTTCGTTGGCAGA
CGATGCTTATTGTAGTATGCGAGATTACAATTTGGATCAATGTATCATCA
TTTCTGGTGAAAGTGGTGCCGGGAAAACGGAGGCATCAAAAATCGTGATG
AGATACGTTGCAGCCGTCTCTGGGCATGGCGATAAAGTTGGAGAAATCAA
GGAACAACTCCTTCAATCTAATCCTGTTTTAGAAGCATTCGGAAACGCCA
AGACAACGAGGAACGACAATTCAAGTAGATTTGGGAAATACATGGATTTG
GAATTCGATTTCAAAGGTTTTCCAATCGGTGGTGTTATCACTAATTGTAA
GTGAACCCTTCTTTTATCCCCATTCCTCCATTGATTGTCGTCAT

Run BLAST on NCBI

protein sequence of TCONS_00011762-protein

>TCONS_00011762-protein ID=TCONS_00011762-protein|Name=TCONS_00011762-protein|organism=Clytia hemisphaerica|type=polypeptide|length=182bp
MVITNKEVGVNDMVLLDPVTEDNLLHNLQIRFNESKIYTYIGDVVVSVNP
YKSLPIYTREYMQEYRTKNIFEVPPHIFSLADDAYCSMRDYNLDQCIIIS
GESGAGKTEASKIVMRYVAAVSGHGDKVGEIKEQLLQSNPVLEAFGNAKT
TRNDNSSRFGKYMDLEFDFKGFPIGGVITNCK

Run BLAST on NCBI

transcript from alignment at sc0000132:198670..200435-

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00011762 ID=TCONS_00011762|Name=TCONS_00011762|organism=Clytia hemisphaerica|type=transcript|length=1766bp|location=Sequence derived from alignment at sc0000132:198670..200435- (Clytia hemisphaerica)
GTTGATCGTCTGCTGTATTACTTTTATACTCACAGTTATCTGACCAAGCA
AGAATGAGACAGCCTCCTTTCAAATAATAGAATATAAAGGAATGAAACTT
AAGAATATTGTGATTAAACCAATCGTTTCATTTTTCAACAAAAAGTAGAA
CAGAATAACAACACATCATCTAAAAACACAAATACCTAGAGAAGTCAGAT
CAGATATGGTGATTACCAATAAAGAAGTAGGTGTCAATGACATGGTCCTC
TTGGATCCTGTCACCGAAGATAATCTTCTCCACAATCTTCAGATTCGCTT
CAATGAATCCAAAATATACGTAAGTAGTGTTTATATCTTGCTTCAAAGTG
TTTAGGCTCTGATCTTTAAAAACAATTTCTCATGTATTTTTTGGGAATTT
AAAAGCAGCCGCGATTGTGCTCTTCGTTAATTTATATATAGCAACTTGTT
GACCTTTAACCCCTATTTTCATTGCAAATCAATTGTTTACCTCTGCATTA
CTCTACCTGTACAATTTCGAATTTCAGACATACATCGGTGATGTGGTTGT
GTCTGTCAACCCTTACAAATCACTCCCCATCTACACCAGAGAATACATGC
AAGAATACAGAACTAAAAATATCTTCGAAGTTCCTCCTCATATGTAAGTA
TTTCTTTCACCGACCAACACACGGAAGTTCTCAACAGAGGATACCTTTTC
AAAATTAGGAAATTGACCTGGTGAGAAATGTTTGGTGACTCAAACTTCAA
CACCATTTAATCAAAAAAATCCTTGCTTTAACTTTCACTTAAATTACTTC
TTCATTAGATTTTCGTTGGCAGACGATGCTTATTGTAGTATGCGAGATTA
CAATTTGGATCAATGTATCATCATTTCTGGTGAAAGTGGTGCCGGGAAAA
CGGGTAAACTTTCTTCGCAGAACATCCTCTTGCATAATTTCATAACCTTT
GGAAACTCCCTTGATAAATGACCTTGCTAATGTTTATCCATGGCTTTCGA
TTTCAATGCTGTTAGTGCTATTTTAACGCTATTAGTTTATTCAGCTACAC
AATGTTTCAAACTAGGGCAAGCAATCTCCAATATGTTAATCAATATGGAA
TCTTAATTCCCTTCTTTTCAGAGGCATCAAAAATCGTGATGAGATACGTT
GCAGCCGTCTCTGGGCATGGCGATAAAGTTGGAGAAATCAAGGAACAACT
CCTTCAATCTAATCCTGTTTTAGAAGGTACGTTAGCTCAGTTTTAAAATT
CAGCGTGTTCGATTGTATCTTCAAAGCTCTTCTGTGTCAGCGAAATTCAA
AAATAGGCTTTCTGTTCTTTTTGGCTGAATTCTACAAAATTCAATAAAAT
ATTAAGAAATTAAAAAAAAATTAGATTAAAATGCTTTATATTGATACCCT
GGCCTTTTTGGAGGGCCTTCTGAGAGTTTATATGTTTACTTATTCTTGAA
ATGAACTTCATTGCATCTTCATTCTAGCATTCGGAAACGCCAAGACAACG
AGGAACGACAATTCAAGTAGATTTGTAAGTACTATGACAAAAATCAAAAT
CTCATGGGCTGGTTCATTGCCTCAGAGGCAAGAGATAGTCCAATGACTAT
TCCTGGTCCCTTTTTCGGGAAGTTTGATTTTTTTGTTTCATACTTTCATT
CTAGGGGAAATACATGGATTTGGAATTCGATTTCAAAGGTTTTCCAATCG
GTGGTGTTATCACTAATTGTAAGTGAACCCTTCTTTTATCCCCATTCCTC
CATTGATTGTCGTCAT

Coding sequence (CDS) from alignment at sc0000132:198670..200435-

>TCONS_00011762 ID=TCONS_00011762|Name=TCONS_00011762|organism=Clytia hemisphaerica|type=CDS|length=3294bp|location=Sequence derived from alignment at sc0000132:198670..200435- (Clytia hemisphaerica)
GGGAAATACATGGATTTGGAATTCGATTTCAAAGGTTTTCCAATCGGTGG
TGTTATCACTAATTGTAAGTGACATTCGGAAACGCCAAGACAACGAGGAA
CGACAATTCAAGTAGATTTAGGCATCAAAAATCGTGATGAGATACGTTGC
AGCCGTCTCTGGGCATGGCGATAAAGTTGGAGAAATCAAGGAACAACTCC
TTCAATCTAATCCTGTTTTAGAAGATTTTCGTTGGCAGACGATGCTTATT
GTAGTATGCGAGATTACAATTTGGATCAATGTATCATCATTTCTGGTGAA
AGTGGTGCCGGGAAAACGGACATACATCGGTGATGTGGTTGTGTCTGTCA
ACCCTTACAAATCACTCCCCATCTACACCAGAGAATACATGCAAGAATAC
AGAACTAAAAATATCTTCGAAGTTCCTCCTCATATATGGTGATTACCAAT
AAAGAAGTAGGTGTCAATGACATGGTCCTCTTGGATCCTGTCACCGAAGA
TAATCTTCTCCACAATCTTCAGATTCGCTTCAATGAATCCAAAATATACG
GGAAATACATGGATTTGGAATTCGATTTCAAAGGTTTTCCAATCGGTGGT
GTTATCACTAATTGTAAGTGACATTCGGAAACGCCAAGACAACGAGGAAC
GACAATTCAAGTAGATTTAGGCATCAAAAATCGTGATGAGATACGTTGCA
GCCGTCTCTGGGCATGGCGATAAAGTTGGAGAAATCAAGGAACAACTCCT
TCAATCTAATCCTGTTTTAGAAGATTTTCGTTGGCAGACGATGCTTATTG
TAGTATGCGAGATTACAATTTGGATCAATGTATCATCATTTCTGGTGAAA
GTGGTGCCGGGAAAACGGACATACATCGGTGATGTGGTTGTGTCTGTCAA
CCCTTACAAATCACTCCCCATCTACACCAGAGAATACATGCAAGAATACA
GAACTAAAAATATCTTCGAAGTTCCTCCTCATATATGGTGATTACCAATA
AAGAAGTAGGTGTCAATGACATGGTCCTCTTGGATCCTGTCACCGAAGAT
AATCTTCTCCACAATCTTCAGATTCGCTTCAATGAATCCAAAATATACGG
GAAATACATGGATTTGGAATTCGATTTCAAAGGTTTTCCAATCGGTGGTG
TTATCACTAATTGTAAGTGACATTCGGAAACGCCAAGACAACGAGGAACG
ACAATTCAAGTAGATTTAGGCATCAAAAATCGTGATGAGATACGTTGCAG
CCGTCTCTGGGCATGGCGATAAAGTTGGAGAAATCAAGGAACAACTCCTT
CAATCTAATCCTGTTTTAGAAGATTTTCGTTGGCAGACGATGCTTATTGT
AGTATGCGAGATTACAATTTGGATCAATGTATCATCATTTCTGGTGAAAG
TGGTGCCGGGAAAACGGACATACATCGGTGATGTGGTTGTGTCTGTCAAC
CCTTACAAATCACTCCCCATCTACACCAGAGAATACATGCAAGAATACAG
AACTAAAAATATCTTCGAAGTTCCTCCTCATATATGGTGATTACCAATAA
AGAAGTAGGTGTCAATGACATGGTCCTCTTGGATCCTGTCACCGAAGATA
ATCTTCTCCACAATCTTCAGATTCGCTTCAATGAATCCAAAATATACGGG
AAATACATGGATTTGGAATTCGATTTCAAAGGTTTTCCAATCGGTGGTGT
TATCACTAATTGTAAGTGACATTCGGAAACGCCAAGACAACGAGGAACGA
CAATTCAAGTAGATTTAGGCATCAAAAATCGTGATGAGATACGTTGCAGC
CGTCTCTGGGCATGGCGATAAAGTTGGAGAAATCAAGGAACAACTCCTTC
AATCTAATCCTGTTTTAGAAGATTTTCGTTGGCAGACGATGCTTATTGTA
GTATGCGAGATTACAATTTGGATCAATGTATCATCATTTCTGGTGAAAGT
GGTGCCGGGAAAACGGACATACATCGGTGATGTGGTTGTGTCTGTCAACC
CTTACAAATCACTCCCCATCTACACCAGAGAATACATGCAAGAATACAGA
ACTAAAAATATCTTCGAAGTTCCTCCTCATATATGGTGATTACCAATAAA
GAAGTAGGTGTCAATGACATGGTCCTCTTGGATCCTGTCACCGAAGATAA
TCTTCTCCACAATCTTCAGATTCGCTTCAATGAATCCAAAATATACGGGA
AATACATGGATTTGGAATTCGATTTCAAAGGTTTTCCAATCGGTGGTGTT
ATCACTAATTGTAAGTGACATTCGGAAACGCCAAGACAACGAGGAACGAC
AATTCAAGTAGATTTAGGCATCAAAAATCGTGATGAGATACGTTGCAGCC
GTCTCTGGGCATGGCGATAAAGTTGGAGAAATCAAGGAACAACTCCTTCA
ATCTAATCCTGTTTTAGAAGATTTTCGTTGGCAGACGATGCTTATTGTAG
TATGCGAGATTACAATTTGGATCAATGTATCATCATTTCTGGTGAAAGTG
GTGCCGGGAAAACGGACATACATCGGTGATGTGGTTGTGTCTGTCAACCC
TTACAAATCACTCCCCATCTACACCAGAGAATACATGCAAGAATACAGAA
CTAAAAATATCTTCGAAGTTCCTCCTCATATATGGTGATTACCAATAAAG
AAGTAGGTGTCAATGACATGGTCCTCTTGGATCCTGTCACCGAAGATAAT
CTTCTCCACAATCTTCAGATTCGCTTCAATGAATCCAAAATATACGGGAA
ATACATGGATTTGGAATTCGATTTCAAAGGTTTTCCAATCGGTGGTGTTA
TCACTAATTGTAAGTGACATTCGGAAACGCCAAGACAACGAGGAACGACA
ATTCAAGTAGATTTAGGCATCAAAAATCGTGATGAGATACGTTGCAGCCG
TCTCTGGGCATGGCGATAAAGTTGGAGAAATCAAGGAACAACTCCTTCAA
TCTAATCCTGTTTTAGAAGATTTTCGTTGGCAGACGATGCTTATTGTAGT
ATGCGAGATTACAATTTGGATCAATGTATCATCATTTCTGGTGAAAGTGG
TGCCGGGAAAACGGACATACATCGGTGATGTGGTTGTGTCTGTCAACCCT
TACAAATCACTCCCCATCTACACCAGAGAATACATGCAAGAATACAGAAC
TAAAAATATCTTCGAAGTTCCTCCTCATATATGGTGATTACCAATAAAGA
AGTAGGTGTCAATGACATGGTCCTCTTGGATCCTGTCACCGAAGATAATC
TTCTCCACAATCTTCAGATTCGCTTCAATGAATCCAAAATATAC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_006607	XLOC_006607	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00011762-protein	TCONS_00011762-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000132	supercontig	sc0000132:198670..200435 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.39878	7.03756	24.4452	24.1845	3.76207	3.03747	8.42072	11.2411	26.3702	32.6637	21.9349	19.6698	52.716	60.1913	32.336	40.2818	51.6271	77.1809	102.504	80.4808	17.708	17.5035	14.6719	17.3848	17.4502	21.1526	58.8754	58.1298	146.202	158.146

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR001609	Myosin_head_motor_dom
IPR027417	P-loop_NTPase

Vocabulary: **Cellular Component**
Term	Definition
GO:0016459	myosin complex

Vocabulary: **Molecular Function**
Term	Definition
GO:0005524	ATP binding
GO:0003774	motor activity

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016459	myosin complex
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003774	motor activity

Blast

[Close]

BLAST of TCONS_00011762 vs. Swiss-Prot (Human)
Match: MYO1B (Unconventional myosin-Ib OS=Homo sapiens GN=MYO1B PE=1 SV=3)

HSP 1 Score: 266.544 bits (680), Expect = 2.243e-81
Identity = 120/173 (69.36%), Postives = 151/173 (87.28%), Query Frame = 2

Query:  227 VGVNDMVLLDPVTEDNLLHNLQIRFNESKIYTYIGDVVVSVNPYKSLPIYTREYMQEYRTKNIFEVPPHIFSLADDAYCSMRDYNLDQCIIISGESGAGKTEASKIVMRYVAAVSGHGDKVGEIKEQLLQSNPVLEAFGNAKTTRNDNSSRFGKYMDLEFDFKGFPIGGVITN 745
            +GV DMVLL+P+ E+  ++NL+ RF+ S+IYTYIG VV+SVNPY+SLPIY+ E ++EYR +N +E+ PHIF+L+D+AY S+RD + DQCI+I+GESGAGKTEASK+VM YVAAV G G +V ++KEQLLQSNPVLEAFGNAKT RNDNSSRFGKYMD+EFDFKG P+GGVI+N
Sbjct:   15 IGVGDMVLLEPLNEETFINNLKKRFDHSEIYTYIGSVVISVNPYRSLPIYSPEKVEEYRNRNFYELSPHIFALSDEAYRSLRDQDKDQCILITGESGAGKTEASKLVMSYVAAVCGKGAEVNQVKEQLLQSNPVLEAFGNAKTVRNDNSSRFGKYMDIEFDFKGDPLGGVISN 187

The following BLAST results are available for this feature:

BLAST of TCONS_00011762 vs. Swiss-Prot (Human)

BLAST of TCONS_00011762 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
MYO1B	2.243e-81	69.36	Unconventional myosin-Ib OS=Homo sapiens GN=MYO1B ...	[more]

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TCONS_00011762 (transcript) - C. hemisphaerica