TCONS_00011757 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011757
Unique NameTCONS_00011757
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length780

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011757 ID=TCONS_00011757|Name=TCONS_00011757|organism=Clytia hemisphaerica|type=transcript|length=780bp
GGCATCTATGGGCGGGGTGTAAAAAAGAGCACTGCGGTGAAGCATGGACA
GACATGATGATGAAGGAGGGGtgtaataaaaataacaaaggccaCTAAAA
TGATCCTCTTACAGACGTGTCAAGGCCGCGGACGCTTGTCGCTCAAGATA
TTTCTAGAACATTCAactAGCCAACTCTCAAAATGGAACGTACATTTGTT
ATGGTTAAACCTGATGGTGTTGCTCGTGGACTTGTTGCAAAGATTATCAA
ACGATTTGAGCAAAGAGGATACAAACTTGTCGGAATGAAATTCATGAAAG
CAAGCGAAGATCTTTTGAAGCAACATTATGGAGACTTAGCTGGTAAACCA
TTTTTCAATGGACTTGTTGAATTCATTGGATCCGGTCCAGTTGTTCCAAT
GGTCTGGGAAGGAAAAGATGTTGTCAAACAAGGTAGACAGATGATGGGCG
AGACTAACCCATTAGCTTCAAAACCAGGATCTATCCGCGGTGACTTTTCT
ATTGACATTGGCCGAAATATTATTCATGGCAGTGATTCTGTTGAATCTgc
caaaaaagaaatcaactTGTGGTTTAAAGAAGACGAATTAGTCAGCTGGA
CCTGCCCTTTAGAAAAATCTGTTTATGAATAggatttgtaaaatatttag
ttttTAACAATGTAGAAAGAAAGGGATGATTAAATCACTTTAAATggctt
tttaaatcttttctttgGAGAAGAATAAAATCTAATTACATTAGGATTTT
GACAGCTATTGACAAAAATTGCTAATTAAC
Run BLAST on NCBI

protein sequence of TCONS_00011757-protein

>TCONS_00011757-protein ID=TCONS_00011757-protein|Name=TCONS_00011757-protein|organism=Clytia hemisphaerica|type=polypeptide|length=149bp
MERTFVMVKPDGVARGLVAKIIKRFEQRGYKLVGMKFMKASEDLLKQHYG
DLAGKPFFNGLVEFIGSGPVVPMVWEGKDVVKQGRQMMGETNPLASKPGS
IRGDFSIDIGRNIIHGSDSVESAKKEINLWFKEDELVSWTCPLEKSVYE
Run BLAST on NCBI

transcript from alignment at sc0000132:157783..161354-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011757 ID=TCONS_00011757|Name=TCONS_00011757|organism=Clytia hemisphaerica|type=transcript|length=3572bp|location=Sequence derived from alignment at sc0000132:157783..161354- (Clytia hemisphaerica)
GGCATCTATGGGCGGGGTGTAAAAAAGAGCACTGCGGTGAAGCATGGACA
GACATGATGATGAAGGAGGGGTGTAATAAAAATAACAAAGGCCACTAAAA
TGATCCTCTTACAGACGTGTCAAGGCCGCGGACGCTTGTCGCTCAAGATA
TTTCTAGAACATTCAGTAAGTATTCAAGGATCCATTGGCCATTTGTTACT
GTTACACTGGAATAAACTCAATTTTATCTCAATCAAAACTTTTTGGATGA
CTCTTACTCTGGTATTAAGTGGATTCAACATTAAAGTGGATAAAAATGTT
AATTTGTACAACTGAGAAACAGACCATGTGTTTGGGTTCTTTATTTTCCA
TCATTGCTGCAACTTTCTTCTCTAATTTAAGCAATTATCTTGTGAGATAC
AAATCTCAAGTATATAGTTGTGTTCTTCCAAATGTGTCCTCAATATTCAC
TCTTTAACCTTTGGACAGGAGGAACATTATATTAACAATCTTTGATTTTA
TATGATTGCTTGGTCTAGTTACAACACACTACTGGACATGTGCTGTTGCT
TATTCACGATGAAAGTTACTGAAAATTAAAGATATTGTTTCTTTGATATC
ATAGAAACAATGCGCGCTTTTTTGCTGGTGAAGCAGAATAAATAAATAGT
TTTCAAAATTTTGTGTCCCACTGTGTAAAAAGAAAAGGGGAGAGAGTTCA
TAAAATTTGGCGTTAATTTTAAAGGATCTTACTTATTAAATTTGTCTTTT
TCGGGACATATTTTTTAAGGGCTGTAAATGCTATTGACCAGGCATAGTTA
ATCGATACAATTGATATTACACCGTTTAGTAGTGTCGACTGCGCACGCGT
CCAATCAATTTTCCATTGTTTTGATTTTAGTGATCGCGATAAACTACGGG
GTAGAGCGTAAAAAAACGGTAGGTAAAAATTTTGTTTTCATAAGGAAACC
CAGCAGAAAAACGGTAGGTAAAGAACTTCTTTTAATCATAACTTCGTTTC
CTCTAGATGAATTTTTGTGAAATTTTCAGGAGAGATCCATAAAATTATCA
TTGATATCATGTTCAAATATATAAATCATTCTTTTTAAGGGAAAGAAAAA
AATTGACAATGTTTACATTCCTCTAATCTTCCACAGTACTAAAGTGCGCA
TTTTTACCTACCGTTTTCACGGTGGAACAGGGTGGAGGAGGCGAGACTCC
TAAACGGTGTATTGGCTGTGATCGATAAGTAATTGATAACAAGCTTACAG
TGACAGCAGTTATGCTTAAAATCAGCATTAAATAGTTGAAAAACAGACTG
ATCAGTAAAATACCAAGTGTTAAAAAAGCTCCAGAATTTCCTGAGTTCCA
GCAGCCAGGTTTAAGTTATTTTTAAAGTTTATTTTATCTGCTGTTTAAAG
TACAAAAGACTTTATAGTCCAAAACAATCCTTGATATTCAAAAAAAATTT
AAATTTTTTACAAAAGTTGCCTTTTGGATTTCCCAAACATTTGTTTTAAG
TGTTCACTCTGGTTCACTTCCACAATAATTTGTGTAATTACACTTTCTGT
CCATTGACAATCAAATATACATATTAGTAAATTATTAGTAAATTTCCAAG
TTTTTCCATTTCCGGTCAATAAATGTGTTACAAAGACGTGACTACATGGA
TATTTGTATTAAAAAATATTACATTGGTTTATTCTATATCAATAACACAA
CATCTTCCTTCCGTTTCATATTTTCAGGTGGATTTGACCCTTGCGCACAG
AAAAAATTTCTGTATGTCCATTGACTTACTAGTTTTTTTTGGCTTGCTAA
TATTAATTGTCGCAAAGTTTGTAAATTTTACAGCTTTTTTGTTCGTAAGA
AAAGGATGAAACTTTTTTAAATTTTTTTATTGCCCTCGCTAAAATTTATC
CACGCAAAGTTTTTAGAAATTGTGATTCGCTAAAATATTAATAAATTCAA
AAAAATCAAGATTTACCTGACTCGCTAATATATGCTAAAATTGGTCCCGC
TAAAATAAAATTTCTACGATTAAAGTATCTCAATTTTGGGATACCTTAAA
TTCCCTTAATTTCGCGCAGCTTGTAAAATAGAATATTTGTGCATCCTTAA
ATTTTCGCGCATTTTACAATTTATGGGATACTTTCTGAGTTTTTTTTACC
ATTTTAAGAGTTTTACACTTTCAGTGTGTATTCAAGCTAGATTTTACACC
CCATAGGTATATTTACCATGAATCGAGGTCCCATTTTATTAAAAGAGTCC
TAAGATGAGATTTCTACACGCTCAGAACGATTACTGATTTCGGGCACCCT
TTAATTTTCGCGCGGCCAGTGTGCGAAAATAGGCCTATTTCACGCGCGTT
TATATTCGCGCATATTCTGCGCGGAATTAAAGGGGCACAAAAATTAATGG
AATTAAGGAAATCAATCCTCAAGAGGCTTCTAACTTTCAATAAACAGTAA
AACAAGAATGAAACAAAAATTATTCTATTTCCACATTATCCCATCAACCC
TTGTGTACTTTTATGTCCAGTAGTAAAAAAACATTTGAGTTAACAAATTA
CAAAACTAGAAGAAAATTTCAGTTTGGAAGGGATTTCCTCATTCTTTTTT
TTTTCTTTTTTTCTAGACTAGCCAACTCTCAAAATGGAACGTACATTTGT
TATGGTTAAACCTGATGGTGTTGCTCGTGGACTTGTTGCAAAGATTATCA
AACGATTTGAGCAAAGAGGATACAAACTTGTCGGAATGAAATTCATGAAA
GCAAGCGAAGATCTTTTGAAGCAACATTATGGAGACTTAGCTGGTANCGT
CTAATGGGGGCATTTGGGTGCTTGGAAAAAACACTGCATCAACCCTTGTG
TACTTTTATGTCCAGTAGTAAAAAAACATTCGAGTTAACAAATTTCAAAA
CTAGAAGAAAATTACAGTTTGGAAGGGATTTTCTCATTCATTTTCTTTTT
TTTCTAGACTAGCCAACTCTCAAAATGGAACGTACATTTGTTATGGTTAA
ACCTGATGGTGTTGCTCGTGGACTTGTTGCAAAGATTATCAAACGATTTG
AGCAAAGAGGATACAAACTTGTCGGAATGAAATTCATGAAAGCAAGCGAA
GATCTTTTGAAGCAACATTATGGAGACTTAGCTGGTAAACCATTTTTCAA
TGGACTTGTTGAATTCATTGGATCCGGTCCAGTTGTTCCAATGGTCTGGG
AAGGAAAAGATGTTGTCAAACAAGGTAGACAGATGATGGGCGAGACTAAC
CCATTAGCTTCAAAACCAGGATCTATCCGCGGTGACTTTTCTATTGACAT
TGGCCGAAATATTATTCATGGCAGTGATTCTGTTGAATCTGCCAAAAAAG
AAATCAACTTGTGGTTTAAAGAAGACGAATTAGTCAGCTGGACCTGCCCT
TTAGAAAAATCTGTTTATGAATAGGATTTGTAAAATATTTAGTTTTTAAC
AATGTAGAAAGAAAGGGATGATTAAATCACTTTAAATGGCTTTTTAAATC
TTTTCTTTGGAGAAGAATAAAATCTAATTACATTAGGATTTTGACAGCTA
TTGACAAAAATTGCTAATTAAC

Coding sequence (CDS) from alignment at sc0000132:157783..161354-

>TCONS_00011757 ID=TCONS_00011757|Name=TCONS_00011757|organism=Clytia hemisphaerica|type=CDS|length=900bp|location=Sequence derived from alignment at sc0000132:157783..161354- (Clytia hemisphaerica)
ATTTGTTATGGTTAAACCTGATGGTGTTGCTCGTGGACTTGTTGCAAAGA
TTATCAAACGATTTGAGCAAAGAGGATACAAACTTGTCGGAATGAAATTC
ATGAAAGCAAGCGAAGATCTTTTGAAGCAACATTATGGAGACTTAGCTGG
TAAACCATTTTTCAATGGACTTGTTGAATTCATTGGATCCGGTCCAGTTG
TTCCAATGGTCTGGGAAGGAAAAGATGTTGTCAAACAAGGTAGACAGATG
ATGGGCGAGACTAACCCATTAGCTTCAAAACCAGGATCTATCCGCGGTGA
CTTTTCTATTGACATTGGCCGAAATATTATTCATGGCAGTGATTCTGTTG
AATCTGCCAAAAAAGAAATCAACTTGTGGTTTAAAGAAGACGAATTAGTC
AGCTGGACCTGCCCTTTAGAAAAATCTGTTTATGAATAGATGGAACGTAC
ATTTGTTATGGTTAAACCTGATGGTGTTGCTCGTGGACTTGTTGCAAAGA
TTATCAAACGATTTGAGCAAAGAGGATACAAACTTGTCGGAATGAAATTC
ATGAAAGCAAGCGAAGATCTTTTGAAGCAACATTATGGAGACTTAGCTGG
TAAACCATTTTTCAATGGACTTGTTGAATTCATTGGATCCGGTCCAGTTG
TTCCAATGGTCTGGGAAGGAAAAGATGTTGTCAAACAAGGTAGACAGATG
ATGGGCGAGACTAACCCATTAGCTTCAAAACCAGGATCTATCCGCGGTGA
CTTTTCTATTGACATTGGCCGAAATATTATTCATGGCAGTGATTCTGTTG
AATCTGCCAAAAAAGAAATCAACTTGTGGTTTAAAGAAGACGAATTAGTC
AGCTGGACCTGCCCTTTAGAAAAATCTGTTTATGAATAGATGGAACGTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006604XLOC_006604Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011757-proteinTCONS_00011757-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011757-exon-sc0000132-1575043694:161190..161354TCONS_00011757-exon-sc0000132-1575043694:161190..161354Clytia hemisphaericaexon
TCONS_00011757-exon-sc0000132-1575043694:158711..158738TCONS_00011757-exon-sc0000132-1575043694:158711..158738Clytia hemisphaericaexon
TCONS_00011757-exon-sc0000132-1575043694:157783..158369TCONS_00011757-exon-sc0000132-1575043694:157783..158369Clytia hemisphaericaexon
TCONS_00011757-exon-sc0000132-1510915933:161190..161354TCONS_00011757-exon-sc0000132-1510915933:161190..161354Clytia hemisphaericaexon
TCONS_00011757-exon-sc0000132-1510915933:158711..158738TCONS_00011757-exon-sc0000132-1510915933:158711..158738Clytia hemisphaericaexon
TCONS_00011757-exon-sc0000132-1510915933:157783..158369TCONS_00011757-exon-sc0000132-1510915933:157783..158369Clytia hemisphaericaexon
TCONS_00011757-exon-sc0000132-1491911889:161190..161354TCONS_00011757-exon-sc0000132-1491911889:161190..161354Clytia hemisphaericaexon
TCONS_00011757-exon-sc0000132-1491911889:158711..158738TCONS_00011757-exon-sc0000132-1491911889:158711..158738Clytia hemisphaericaexon
TCONS_00011757-exon-sc0000132-1491911889:157783..158369TCONS_00011757-exon-sc0000132-1491911889:157783..158369Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000132supercontigsc0000132:157783..161354 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
143.6	148.27	181.72	344.341	96.8266	101.718	131.407	144.372	86.1301	90.8154	82.157	181.148	87.0773	88.0969	98.3289	64.3427	112.873	105.292	52.0807	65.7743	137.208	126.68	121.066	138.243	170.502	222.588	119.301	110.015	54.3785	65.9106
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001564Nucleoside_diP_kinase
IPR034907NDK-like_dom
IPR023005Nucleoside_diP_kinase_AS
Vocabulary: Biological Process
TermDefinition
GO:0006228UTP biosynthetic process
GO:0006241CTP biosynthetic process
GO:0006165nucleoside diphosphate phosphorylation
GO:0006183GTP biosynthetic process
Vocabulary: Molecular Function
TermDefinition
GO:0004550nucleoside diphosphate kinase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006241 CTP biosynthetic process
biological_process GO:0006183 GTP biosynthetic process
biological_process GO:0006165 nucleoside diphosphate phosphorylation
biological_process GO:0006228 UTP biosynthetic process
molecular_function GO:0004550 nucleoside diphosphate kinase activity
Blast
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BLAST of TCONS_00011757 vs. Swiss-Prot (Human)
Match: NDKA (Nucleoside diphosphate kinase A OS=Homo sapiens GN=NME1 PE=1 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 8.051e-70
Identity = 101/148 (68.24%), Postives = 123/148 (83.11%), Query Frame = 3 
Query:  186 ERTFVMVKPDGVARGLVAKIIKRFEQRGYKLVGMKFMKASEDLLKQHYGDLAGKPFFNGLVEFIGSGPVVPMVWEGKDVVKQGRQMMGETNPLASKPGSIRGDFSIDIGRNIIHGSDSVESAKKEINLWFKEDELVSWTCPLEKSVYE 629
            ERTF+ +KPDGV RGLV +IIKRFEQ+G++LVG+KFM+ASEDLLK+HY DL  +PFF GLV+++ SGPVV MVWEG +VVK GR M+GETNP  SKPG+IRGDF I +GRNIIHGSDSVESA+KEI LWF  +ELV +T   +  +YE
Sbjct:    5 ERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE 152
The following BLAST results are available for this feature:
BLAST of TCONS_00011757 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NDKA8.051e-7068.24Nucleoside diphosphate kinase A OS=Homo sapiens GN... [more]
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