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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011746 ID=TCONS_00011746|Name=TCONS_00011746|organism=Clytia hemisphaerica|type=transcript|length=2668bpRun BLAST on NCBI transcript from alignment at sc0000132:520502..533323+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00011746 ID=TCONS_00011746|Name=TCONS_00011746|organism=Clytia hemisphaerica|type=transcript|length=12822bp|location=Sequence derived from alignment at sc0000132:520502..533323+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00011746 vs. Swiss-Prot (Human)
Match: GRN (Granulins OS=Homo sapiens GN=GRN PE=1 SV=2) HSP 1 Score: 162.54 bits (410), Expect = 7.380e-42 Identity = 106/256 (41.41%), Postives = 134/256 (52.34%), Query Frame = 3
Query: 120 KTKAISLRDVACPDGQSQCPSGNTCCKLSSGGYGCCPLPKATCCSDGVHCCPNGYSCDG--GFCQKGNERIKASTKKIA-IKL-------KDVVCPDGQSECPSGNTCCKLSSGEYGCCPLPKATCCSDGVHCCPNGYSCDG-GVCSKATEEVKPSLLKTTKSSPQFHHHHLANVQKFDKSDIVCPDGQSECPSGYTCCPLDGGYYGCCPYDHAVCCSDEQHCCPLNSVCSPDCTECLDNNNRRFPSQTKTPSKQV 854
K A ++ DV C D + CP G TCC+L SG +GCCP +A CC D +HCCP G++CD G C++G ++ K A + L +DV C D S CPS +TCC+L+SGE+GCCP+P+A CCSD HCCP GY+C G C + +E V L K H DI C D + CP G TCCP GG + CC HAVCC D QHCCP C+ C P+ S V
Sbjct: 273 KLPAHTVGDVKC-DMEVSCPDGYTCCRLQSGAWGCCPFTQAVCCEDHIHCCPAGFTCDTQKGTCEQGPHQVPWMEKAPAHLSLPDPQALKRDVPC-DNVSSCPSSDTCCQLTSGEWGCCPIPEAVCCSDHQHCCPQGYTCVAEGQCQRGSEIVA-GLEKMPARRASLSH----------PRDIGC-DQHTSCPVGQTCCPSLGGSWACCQLPHAVCCEDRQHCCPAGYTCNVKARSCEKEVVSAQPATFLARSPHV 514 HSP 2 Score: 162.54 bits (410), Expect = 7.724e-42 Identity = 95/246 (38.62%), Postives = 129/246 (52.44%), Query Frame = 3
Query: 135 SLRDVACPDGQSQCPSGNTCCKLSSGGYGCCPLPKATCCSDGVHCCPNGYSCDGGFCQ--------KGNERIKASTKKIAIKLKD-VVCPDGQSECPSGNTCCKLSSGEYGCCPLPKATCCSDGVHCCPNGYSCDGGVCSKATEEVKPSLLKTTKSSPQFHHHHLANVQKFDKSDIVCPDGQSECPSGYTCCPLDGGYYGCCPYDHAVCCSDEQHCCPLNSVCSPDCTECLDNNNRRFPSQTKTPS 845
S+ + CPD Q +CP +TCC + G +GCCP+P+A+CC D VHCCP+G CD + +++ A A+ L V+CPD +S CP G+TCC+L SG+YGCCP+P ATCCSD +HCCP CD ++ L ++ L + D+ C D + CP GYTCC L G +GCCP+ AVCC D HCCP C C + + P K P+
Sbjct: 120 SVGAIQCPDSQFECPDFSTCCVMVDGSWGCCPMPQASCCEDRVHCCPHGAFCDLVHTRCITPTGTHPLAKKLPAQRTNRAVALSSSVMCPDARSRCPDGSTCCELPSGKYGCCPMPNATCCSDHLHCCPQDTVCD---------LIQSKCLSKENATTDL----LTKLPAHTVGDVKC-DMEVSCPDGYTCCRLQSGAWGCCPFTQAVCCEDHIHCCPAGFTCDTQKGTC-EQGPHQVPWMEKAPA 350 HSP 3 Score: 151.369 bits (381), Expect = 4.084e-38 Identity = 97/266 (36.47%), Postives = 130/266 (48.87%), Query Frame = 3
Query: 78 NVLMVNHXVIKASLKTKAISLRDVACPDGQSQCPSGNTCCKLSSGGYGCCPLPKATCCSDGVHCCPNGYSCDG-GFCQKGNERIKASTKKIAIKL-----KDVVCPDGQSECPSGNTCCKLSSGEYGCCPLPKATCCSDGVHCCPNGYSCD--GGVCSKATEEVKPSLLKTTKSSPQFHHHHLANVQKFDKSDIVCPDGQSECPSGYTCCPLDGGYYGCCPYDHAVCCSDEQHCCPLNSVCSPDCTECLDNNNRRFPSQTKTPSKQ 851
V + SL RDV C D S CPS +TCC+L+SG +GCCP+P+A CCSD HCCP GY+C G CQ+G+E + K A + +D+ C D + CP G TCC G + CC LP A CC D HCCP GY+C+ C K +P+ LA D+ C +G C TCC + + CCPY VCC+D +HCCP C+ T+CL R+ + + P+ +
Sbjct: 341 QVPWMEKAPAHLSLPDPQALKRDVPC-DNVSSCPSSDTCCQLTSGEWGCCPIPEAVCCSDHQHCCPQGYTCVAEGQCQRGSEIVAGLEKMPARRASLSHPRDIGC-DQHTSCPVGQTCCPSLGGSWACCQLPHAVCCEDRQHCCPAGYTCNVKARSCEKEVVSAQPATF-------------LARSPHVGVKDVECGEGHF-CHDNQTCCRDNRQGWACCPYRQGVCCADRRHCCPAGFRCAARGTKCLRREAPRWDAPLRDPALR 590 HSP 4 Score: 149.828 bits (377), Expect = 1.067e-37 Identity = 91/233 (39.06%), Postives = 117/233 (50.21%), Query Frame = 3
Query: 168 SQCPSGNTCCKLSSGGYGCCPLPKATCCSDGVHCCPNGYSCDGG----FCQKGNERIKASTKKIAIKLKDVVCPDGQSECPSGNTCCKLSSGEYGCCPLPKATCCSDGVHCCPNGYSCDGGVCSKATEEVKPSLLKTTKSSPQFHHHHLANVQKFDKSDIVCPDGQSECPSGYTCCPLDGGYYGCCPYDHAVCCSDEQHCCPLNSVCSPDCTECLDNNNRRFPSQTKTPSKQV 854
+ C +G++C SG CCP P+A C DG HCCP G+ C F + GN + A + CPD Q ECP +TCC + G +GCCP+P+A+CC D VHCCP+G CD T L K + N S ++CPD +S CP G TCC L G YGCCP +A CCSD HCCP ++VC ++CL N TK P+ V
Sbjct: 65 AHCSAGHSCIFTVSGTSSCCPFPEAVACGDGHHCCPRGFHCSADGRSCFQRSGNNSVGA-----------IQCPDSQFECPDFSTCCVMVDGSWGCCPMPQASCCEDRVHCCPHGAFCDLVHTRCITPTGTHPLAKKLPA-------QRTNRAVALSSSVMCPDARSRCPDGSTCCELPSGKYGCCPMPNATCCSDHLHCCPQDTVCDLIQSKCLSKENATTDLLTKLPAHTV 279 The following BLAST results are available for this feature:
BLAST of TCONS_00011746 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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