TCONS_00011741 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00011741
Unique Name	TCONS_00011741
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1381

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000132:492448..498278+

transcript sequence

>TCONS_00011741 ID=TCONS_00011741|Name=TCONS_00011741|organism=Clytia hemisphaerica|type=transcript|length=1381bp
ttatttcttttgaaatcaaagtatttattattttattatttaaggTGCTT
CAACACGTCAATTCATACAAAGAGCAAGATATATAGTGATAACACAGTCA
ATGCTCTCCAATTTGACGCTTATTGTGAAATGGCTTTTCCTTTAGCCTTT
TGAGCTCTGTGCCAAGTCATGACACCCCCTAGGGAAATTTTGGGGGCTTT
GTTTCATCATCATTTAAAAAGTCTGTATAGTGAATAGAGATAACTAAAAT
AAGATGTCAGAAGAAATGGTGAATCTTTTTGGCAGTGGCAGTGACGACAG
TAATGATAATAACATGTCATCACCTGAAAGAGGTGGTGACAATAATGAAC
AACAAGGTGACAATGATGGCCCACATGAAGAAATGCAATCCACTCAATCA
CAAATGAAGGATTTATTTGGTGCAGAATCAGATGCTTCAAAAGATAGCAG
TGACAGTGCAACTAGTAGTGATGAAGGAAATGCAGCAGAACCAAAAGCTT
CATCGGATGTTAACTTTGATGAGCCAAAAGAGGAGAATAGCGACGAGGAA
GGGCGTGACCCTCCACAACAAGCAAGCAGTGACAGTGATAGTGACATGGG
CATTGGAAGAAATAAATCAAGTACAGGAGGTGGAGCCAGTGCTGCGCCCA
CCACTCAAGATCTTTTTGGTGAAGATGTCTCCTCTGACGAAGAAACTCAA
GACAAACCATCAACATCATTTCGACCTGATATATCACCTTTGTCCGGTGA
TGAAGATTCAATGAGGTTCAGTGAGAGGAGAATTCCAAGTCCTTCCAAAG
ACAAAGAAGATGAGGAAGAAGAAGACGAAGGACTCTCAATTTCCATCGAG
CTTCCACGCTGTAACATATCACTGGGTAAAGAGCTGTACTTCGTTAAACT
ACCCAATTTCTTGAGTGTGGATACTAAACCATTCGATTCGAACTATTATG
AAGATATTTCATCAGACGAGGACGAAATCTTGGATGAAGAAGGAAGAGCT
AGATTGAAACTGAAGGTGGAGAACACAATTCGCTGGCGTTACTCCAAAGA
TAAGGATGGTGAAGAGATCAAAGAATCAAACTGTCGTTTCGTTCGTTGGT
CTGATGGCTCGCTGTCCATGCATCTTGGTAACGAAGTGTTCGATGTCTTC
AAAATGAAAGTCGACGGTGAACAAAATCACCTCTTCGTTCAACAGGGAAC
AGGTCTTCAAGCACAAGCTGTCTTCAAGAACAAACTCTCCTTCCGTCCTC
ATTCCACTACCTCTCAAACACATCGAAAGATGACGCAATCTATTGCAGAC
CGTATGAACAAAGCACAGAAAGTCAAGATGATGCCTGCTATGGAAAAAGA
TCCTGAATCACAACGAGAATCTGCTTTGAAG

Run BLAST on NCBI

transcript from alignment at sc0000132:492448..498278+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00011741 ID=TCONS_00011741|Name=TCONS_00011741|organism=Clytia hemisphaerica|type=transcript|length=5831bp|location=Sequence derived from alignment at sc0000132:492448..498278+ (Clytia hemisphaerica)
ttatttcttttgaaatcaaagtatttattattttattatttaaggTGCTT
CAACACGTCAATTCATACAAAGAGCAAGATATATAGTGATAACACAGTCA
ATGCTCTCCAATTTGACGCTTATTGTGAAATGGCTTTTCCTTTAGCCTTT
TGAGCTCTGTGCCAAGTCATGACACCCCCTAGGGAAATTTTGGGGGCTTT
GTTTCATCATCATTTAAAAAGTCTGTATAGTGAATAGAGATAACTAAAAT
AAGATGTCAGAAGAAATGGTGAATCTTTTTGGCAGTGGCAGTGACGACAG
TAATGATAATAACATGTCATCACCTGAAAGAGGTGGTGACAATAATGAAC
AACAAGGTGACAATGATGGCCCACATGAAGAAATGCAATCCACTCAATCA
CAAATGAAGGATTTATTTGGTGCAGAATCAGATGCTTCAAAAGATAGCAG
TGACAGTatataatgtttttaatttcaaagtTATATTAGATGCCATAAAA
TGAATAGAACCACAAAGTGCTCCAAAAATATATCCGGAAATAATGAAATT
GCTGGGACAAAAGTTTCTTGGTACTGTTTACATATGATTAGAAATATTCA
GAATAATAAAAAACATCGATGATCCTGGATAAGCTATTCTTCTTCAATAT
TCTcactttttcctattttttaccaaaaacaGTACTTTTTGGCATATCTT
TCAAGAGTTGTATAATACAACATACCATTTAAGTTTTCTTCTGAAACTGG
TAATAGTGTTGTATATTGTTAGACTCTAGgtagaaaaataatgaaaactt
taGGATTAGTTATGATGGATATAAATTCCATATAAATTCCCTCCTCTTTT
TCTAGGTGCAACTAGTAGTGATGAAGGAAATGCAGCAGAACCAAAAGCTT
CATCGGATGTAAGTAAAACAAATTTGGTCTGAAAAGTTGCAATTTCAGCA
ATTTCTAATGGGTTCATGTAGAAATACCATGTTCCTTCAAAAGAATCTAT
TAGTAATTTCCCTTTAAAAATACAGGAATAGATGGCTTCTGTTAAATAAA
AACagaaattttcctttaaaaatacggataaataaaaatatttgggaaat
ttgtccaaaatacgatctctcgcttaccagaccccttttttgAACGTGGT
GTTGTATTTAtacggtacaatatgaaatacagcatttatgtatgCGTTat
aagccaatcagattgcttatatttttcgTGTTGAtgataagcaaacgata
tcactcttatttaaaaacaaaacctttaagcaaTTGAAATAAAAGCATTG
AAATTTGAGTTCTCCCTTTAACAGCTATTTGCAGTAAACTTCCAAATTCT
CACAAGTCAAATTCAAAATGAGTATATAAATGCAGGGGTTGAAAAGATAC
TCAGACCCTTATAACCTCCATAAAAGTAGATGGGAAACGGggctaaattc
aaaatttaattttaaaactgTAACCACAAGATATTTAACTCTGTAAACAA
ACTAAAAAACATATATGATAGGTATTTCCAACCTGTTTTTATTACTATTT
TGATTAATTTGTTAGCTTATTTTAGAAATTCATTAGGTCAAAAGAAGAGC
TCAAAAGAGCGCCCATGACACCTTTCTTTTTGCACATCTTTTATAATATG
TCTTCATCTTTTTTGGGTCAATCTATATAGGAATGTCTCAATTCAGTCAA
AAGTTCCTCAAAAGCTTTTCCAAGATGAGAAAAAGTCATTAAGTCTTGCT
AATTGTTTGGTTTTTATAACTACAAAAGTCTGTCCCTTGAACATTACTTT
ATACAACAGGTTAACTTTGATGAGCCAAAAGAGGAGAATAGCGACGAGGA
AGGGCGTGACCCTCCACAACAAGCAAGCAGTGACAGTGATAGTGACATGG
GCATTGGAAGAAATAAATCAAGTACAGGAGGTGGAGCCAGTGCTGCGCCC
ACCACTCAAGATCTTTTTGGTGAAGATGTCTCCTCTGACGAAGAAACTCA
AGACAAAgtatgtttttttcttgaacGTTTGAATTCGCTTCAATGGTCAC
ACTTTCTTGCCTAATTGATTCCGTCTATTATGTATGGCAAAATCATAATA
ATCCAAGCTGTCCCATAGGGGTTACCCATTAAACTATATGAAAATTATCC
AACATGAGTTTGATATAATCaggatatttctttacttttttgtaTTCTCT
TAAATATTCTCTTCATAATTTAGTTATTTGCATAATTGCTTCTTTGGCTG
CCAAAAGATTACATTGAATTATACTGAGCACATACAATTTTTGTCATTAT
TCTTTTTTCTACTAGCCATCAACATCATTTCGACCTGATATATCACCTTT
GTCCGGTGATGAAGATTCAATGAGGTTCAGTGAGAGGAGAATTCCAAGTC
CTTCCAAAGACAAAGAAGATGAGGAAGAAGAAGACGAAGGTCTGTACACA
CCTCCTTTTTTGGCTAATGTTGGctaaaattggctaaaattgGGATGTTC
TCATTATTGTTTGCGATTTTCAGACGGCGTTCGGTGCACGTGTTTCCGTT
TAGCGAGATTCGGCTGCTCTCATTTTTCAAACATCAGGCTTGGATGCTCT
TAAAAATTGACTCGAAAAGTACTTATAATCTTTGATTTGAGGCATGCATT
GTTCTTAATTAGTTCTTAGGTTCTGGCCAAAATTAAGTCTTGTCATGTTC
TCATTAAGCTATtcttaaacaaatattttttgtatttgcACAATTTCCAC
CTATGAAtccagtgctgcaaataacggccggtgaccggtaattaccggtc
atttcGTAGTTTCTACCGGCCAATCTGAAGCTCAATctttcattttgtcc
ggttaaaatttaAAGACTAGAGGCTTAGATAAATACTTAATAAAGTTTCC
AATTAAAAGAGGaatagattttgaattaatacaggtgtttagccaatcta
aaCGTCATTTCAGACTTTTCTAATGGGGTTCTGCCAGACCCCCTGCTCAG
ACCCCCTGCTCAAATTATTttcgttgcactcaaaatattaccggccaact
gaaatttccttatttgcagcactggaATCAGTCAATGGAGGACTAATCAA
GTAGGTCCAACACGTGTAGTGCAACAATTAATCTCAGTGTAATCAATGAC
TGAACTGAGATTTCGGACTCAGAAATTTTGCTCTACCGAACGAGCTATGC
AGTCTACTAGCGATGTAAAAGTCACGAGTTTGAATCTCACTCCAGCCCTC
AGTCTACAAGTTCAAATAACATTAAATTTAGATCTTTGCGCTGTGTGAAT
ATTTTGGCTCTTTATCTACAAATTCATTCAAAGTATCTCCTTAATCCAGC
TCATAAAGAGCTTTTTTTCATTACCAAAAGGCTAAATAATTGATTGGATT
GAATTGGATTGAATTCATATATcactttattttcttgttttatttGTGCA
GGACTCTCAATTTCCATCGAGCTTCCACGCTGTAACATATCACTGGGTAA
AGAGCTGTACTTCGTTAAACTGCCCAATTTTTTGAGTGTGGATACTAAAC
CATTCGATTCGAACTATTATGAAGATATTTCATCAGATGAGGACGAAATC
TTAGATGAAGAAGGAAGAGCTAGATTGAAACTGAAGGTAAAGATAAACGA
AACAACTAAATAGAGAAAAGTGTTGAATTATCCTGGTTATAAACAACTGC
TTTACAGTACAATACTCTATATTGAAGTAAAATACCTTCGTCATATATTT
TtttcggcttcaaaaatcactggAATTAAGAAGATTGCTTTATGAAATTC
GCTTCGTACATCTAAATGACACTTCGTACTCCGGCCAATTTATTTGCAAG
TTACAGTCAATGAAAGTGCCTCCAACTGATTTCAAAGCCACAATACCTAT
TGTAAAAGGGTGTAGGTAATTATCATCTTTTGTCTGAACAAACAAATTTT
CAACTCTCTCCCTTTGTACTTTTCAGGTGGAGAACACAATTCGCTGGCGT
TACTCCAAAGATAAGGATGGTGAAGAGATCAAAGAATCAAACTGTCGTTT
CGTTCGTTGGTCTGATGGCTCGCTGTCCATGCATCTTGGTAACGAAGTGT
TCGATGTCTTCAAAATGAAAGTCGACGGTGAACAAAATCACCTCTTCGTT
CAACAGGTATGTGGTTGGATTTTCATAGGAAATTGTCTAATTAGATGTAA
GTTGACTGGTTCGATGTCTTCAACATCCAGGTTCTAATGGCTTCACCAAA
AGTAAAGTTACACTTGCTATAAAACCCTACTCCCAGTTCATGTTGTAAGC
GAAAATCAATAAAAGTGAGTTTTATACTaatagtttgagtaaagaaaacN
TTTTCTTGTTTTATTTGTGCAGGACTCTCAATTTCCATCGAGCTTCCACG
CTGTAACATATCACTGGGTAAAGAGCTGTACTTCGTTAAACTACCCAATT
TCTTGAGTGTGGATACTAAACCATTCGATTCGAACTATTATGAAGATATT
TCATCAGACGAGGACGAAATCTTGGATGAAGAAGGAAGAGCTAGATTGAA
ACTGAAGGTAAATATGAACGAAACAACTAAATAGAGAAAAGTGTTGAATT
ATCCTGGTTATAAACAACTGCTTTACAGTACAATACTCTATATTGAAGTA
AAATGCCTTCGTCATATATTTTtttcggcttcaaaaatcactggAATTAA
GAAGATTGCTTTATGAAATTCGCTTCGTACATCTAAATGACACTTCGTAC
TCCGGCCAATTTATTTGCAAGTTACAGTCAATGAAAGTGCCTCCAACTGA
TTTCAAAGCCACAATACCTATTGTAAAAGGGTGTAGGTAATTATCATCTT
TTGTCTGAACAAACAAATTTTCAACTCTCTCCCTTTGTACTTTTCAGGTG
GAGAACACAATTCGCTGGCGTTACTCCAAAGATAAGGATGGTGAAGAGAT
CAAAGAATCAAACTGTCGTTTCGTTCGTTGGTCTGATGGCTCGCTGTCCA
TGCATCTTGGTAACGAAGTGTTCGATGTCTTCAAAATGAAAGTCGACGGT
GAACAAAATCACCTCTTCGTTCAACAGGTATGTGGTTGGATTTTCATAGG
AAATTGTCTAATTAGATGTAAGTTGACTGGTTCGATGTCTTCAACATCCA
GGTTCTAATGGCTTCACCAAAAGTAAAGTTACACTTGCTATAAAACCCTA
CTCCCAGTTCATGTTGTAAGCGAAAATCAATAAAAGTGAGTTTTATACTa
gtagtttgagtaaagaaaacgagtTTTCAGTCAATTTCATACTCCCATAG
AATTTGCCAACTTTTTGGTTACAGAAACGGCTAGTTGATTGATTGACATT
GAGATATCGACATAGCTACCAAACAATGAATAAGTTTTTAAAAGGATATT
TGTACAAGCTATATCAAGGGCGATGCCTTTATCAAAACGACAGTTTTACG
ACAGTTTTTAAATTCCTGGGCAGTTTTATTGTACGCCGTAGTTGTGCGTG
TTCTTCTTAAAATGAATCGAGGTTTAAACATTGTTTGTGAGGCGTCCTTT
TAATCCTTACTTTCAAAGAACGAAAAGCTATTACAGTTTATAGAATGGTg
ctgaaattttccaaagatattAAAGACTTGGTCTTTATTTTCCAGGGAAC
AGGTCTTCAAGCACAAGCTGTCTTCAAGAACAAACTCTCCTTCCGTCCTC
ATTCCACTACCTCTCAAACACATCGAAAGATGACGCAATCTATTGCAGAC
CGTATGAACAAAGCACAGAAAGTCAAGATGATGCCTGCTATGGAAAAAGA
TCCTGAATCACAACGAGAATCTGCTTTGAAG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_006597	XLOC_006597	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000132	supercontig	sc0000132:492448..498278 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.09919	4.52252	6.38342	4.46896	8.95041	8.15435	5.00325	5.12648	6.49851	7.07939	2.00286	2.85982	0.523629	2.24569	3.32131	4.27518	3.36609	2.57845	1.97767	0.664342	3.07797	2.66314	3.13275	5.13532	2.66254	4.72156	2.90213	0.601805	0.767597	2.26233

Blast

[Close]

BLAST of TCONS_00011741 vs. Swiss-Prot (Human)
Match: LEO1 (RNA polymerase-associated protein LEO1 OS=Homo sapiens GN=LEO1 PE=1 SV=1)

HSP 1 Score: 241.506 bits (615), Expect = 2.039e-71
Identity = 133/246 (54.07%), Postives = 169/246 (68.70%), Query Frame = 2

Query:  653 TQDLFG--EDVSSDEETQDKPSTSFRP-DISPLSGDEDSMRFSERRIPSPSXXXXXXXXXXXGLSISIELPRCNISLGKELYFVKLPNFLSVDTKPFXXXXXXXXXXXXXXXXXXXGRARLKLKVENTIRWRYSKDKDGEEIKESNCRFVRWSDGSLSMHLGNEVFDVFKMKVDGEQNHLFVQQGTGLQAQAVFKNKLSFRPHSTTSQTHRKMTQSIADRMNKAQKVKMMPAMEKDPESQRESALK 1381
            T DLFG  +D+SS  + +DKP T  +P D + L  D+      E  IP                 I +E+P+ N  LG +LYFVKLPNFLSV+ +PFD  YYED   DE+ + +E GR RLKLKVENTIRWR  +D++G EIKESN R V+WSDGS+S+HLGNEVFDV+K  + G+ NHLF++QGTGLQ QAVFK KL+FRPHST S THRKMT S+ADR +K QK++++P   +DPE QR   +K
Sbjct:  311 TMDLFGGADDISSGSDGEDKPPTPGQPVDENGLPQDQ----QEEEPIPE--------------TRIEVEIPKVNTDLGNDLYFVKLPNFLSVEPRPFDPQYYEDEFEDEEMLDEE-GRTRLKLKVENTIRWRIRRDEEGNEIKESNARIVKWSDGSMSLHLGNEVFDVYKAPLQGDHNHLFIRQGTGLQGQAVFKTKLTFRPHSTDSATHRKMTLSLADRCSKTQKIRILPMAGRDPECQRTEMIK 537

The following BLAST results are available for this feature:

BLAST of TCONS_00011741 vs. Swiss-Prot (Human)

BLAST of TCONS_00011741 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
LEO1	2.039e-71	54.07	RNA polymerase-associated protein LEO1 OS=Homo sap...	[more]

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TCONS_00011741 (transcript) - C. hemisphaerica