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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011734 ID=TCONS_00011734|Name=TCONS_00011734|organism=Clytia hemisphaerica|type=transcript|length=4551bpRun BLAST on NCBI protein sequence of TCONS_00011734-protein >TCONS_00011734-protein ID=TCONS_00011734-protein|Name=TCONS_00011734-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1206bp MDELERLESLSLVSKVCTELENHLGMNDKTLAEFVIMLAGKSSSTEKFEKRun BLAST on NCBI transcript from alignment at sc0000132:448554..468004+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00011734 ID=TCONS_00011734|Name=TCONS_00011734|organism=Clytia hemisphaerica|type=transcript|length=19451bp|location=Sequence derived from alignment at sc0000132:448554..468004+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000132:448554..468004+ >TCONS_00011734 ID=TCONS_00011734|Name=TCONS_00011734|organism=Clytia hemisphaerica|type=CDS|length=101388bp|location=Sequence derived from alignment at sc0000132:448554..468004+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00011734 vs. Swiss-Prot (Human)
Match: DHX8 (ATP-dependent RNA helicase DHX8 OS=Homo sapiens GN=DHX8 PE=1 SV=1) HSP 1 Score: 1502.26 bits (3888), Expect = 0.000e+0 Identity = 746/967 (77.15%), Postives = 846/967 (87.49%), Query Frame = 2
Query: 776 ETAEVGQIYDGKVTNIMQFGCFVQIFGIRQRQEGLVHVSQLRREGRXXXXXXXXXXXXXXXXXXXXXXGKKTSLSMKDVDQITGEDLNPNSGVRLPTSRSQNEEDLLRNPDRPSNVKPVIPMYEEEGTNVKKKFKRVSSPEKWEIKQLISAGVLDKADYPDFDEETGILPXXXXXXXXXXXXX-XXXXPPFLQGQTKLSVNVSPIKIVKNPDGTLPRAAMMQTALSKERREVKQQQREAQADTIPKDIGKMWIDPVPDVLDGDNKPYFAQDMKGAAMQTQDVPEWKKATFXXXXXXXXXXTSLTILEQRQSLPIYKLKDQLVKAVMDNQILIVIGETGSGKTTQITQYLAEEGFTATGKIGCTQPRRVAAMSVAKRVAEEYGCRLGQEVGFTIRFEDCTTPETRIKYMTDGMLLRECLIDSELSPYSLIMLDEAHERTVSTDVMFGLLKKAVLKRKDLKLIVTSATLDAVKFSTYFFEAPIFTIPGRTFPVEILYTKEAEADYLDAALITVMQIHLTEPPGDVLVFLTGQEEIDTACEILFERMKSLGSDVPDLIILPVYSALPSEMQTRIFDPAPPGSRKVVIATNIAETSLTIDGIYYVVDPGFVKQNVYNSKTCIDQLVVTPISQAQAKQRSGRAGRTGPGKCYRLYTERAYRDEMLSTNVPEIQRTNLAQTILELKAMGVNDLISFDFMDPPPMETLTTAMENLHSLSALDDEGLLTRLGRRMAEFPLSPQLAKMLIQSVHLSSAEEVLTVVSMLSVQNVFYRPKEKQAVADQKKAKFHQVEGDHLTLLAVYNAWKNSKFSNAWCFENFVQARSLKRAQDVRKQLLGIMDRHKLDVVSCGKNIVRCQKAIVSGYFRNAAKKDPQEGYKTQVDNQSVYIHPSSSLFNRQPEWVVYHELVLTTKEYMREVIAIDPKWLVEFSPAFYKFSDKNKLSKRKKEQRIEPLYNRYEEPNAWRISRAYRRR 3673
E +G IY+GKVT+IMQFGCFVQ+ G+R+R EGLVH+S+LRREGRV +V DVV+K Q VKVKVL+ G KTSLSMKDVDQ TGEDLNPN R NEE +RNPDRP+++ V E+ + +K+ R+S PEKWEIKQ+I+A VL K ++PDFDEETGILPK DD ++E EEEPPFL+G TK S+++SPIKIVKNPDG+L +AAMMQ+AL+KERRE+KQ QREA+ D+IP + K W+DP+PD +G A +M+G M D+PEWKK FGG SYGKKT ++ILEQR+SLPIYKLK+QLV+AV DNQILIVIGETGSGKTTQITQYLAE G+T+ GKIGCTQPRRVAAMSVAKRV+EE+GC LGQEVG+TIRFEDCT+PET IKYMTDGMLLRECLID +L+ Y++IMLDEAHERT+ TDV+FGLLKK V KR+D+KLIVTSATLDAVKFS YF+EAPIFTIPGRT+PVEILYTKE E DYLDA+LITVMQIHLTEPPGD+LVFLTGQEEIDTACEIL+ERMKSLG DVP+LIILPVYSALPSEMQTRIFDPAPPGSRKVVIATNIAETSLTIDGIYYVVDPGFVKQ VYNSKT IDQLVVTPISQAQAKQR+GRAGRTGPGKCYRLYTERAYRDEML+TNVPEIQRTNLA T+L LKAMG+NDL+SFDFMD PPMETL TAME L++L ALDDEGLLTRLGRRMAEFPL P L KMLI SVHL +EE+LT+VSMLSVQNVFYRPK+KQA+ADQKKAKFHQ EGDHLTLLAVYN+WKN+KFSN WC+ENF+QARSL+RAQD+RKQ+LGIMDRHKLDVVSCGK+ VR QKAI SG+FRNAAKKDPQEGY+T +D Q VYIHPSS+LFNRQPEWVVYHELVLTTKEYMREV IDP+WLVEF+PAF+K SD KLSK+KK+QR+EPLYNRYEEPNAWRISRA+RRR
Sbjct: 260 EEPTIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSKGQRVKVKVLSFTGTKTSLSMKDVDQETGEDLNPNR--RRNLVGETNEETSMRNPDRPTHLSLVSAPEVEDDSLERKRLTRISDPEKWEIKQMIAANVLSKEEFPDFDEETGILPKVDDEEDEDLEIELVEEEPPFLRGHTKQSMDMSPIKIVKNPDGSLSQAAMMQSALAKERRELKQAQREAEMDSIPMGLNKHWVDPLPDA-EGRQ---IAANMRGIGMMPNDIPEWKKHAFGGNKASYGKKTQMSILEQRESLPIYKLKEQLVQAVHDNQILIVIGETGSGKTTQITQYLAEAGYTSRGKIGCTQPRRVAAMSVAKRVSEEFGCCLGQEVGYTIRFEDCTSPETVIKYMTDGMLLRECLIDPDLTQYAIIMLDEAHERTIHTDVLFGLLKKTVQKRQDMKLIVTSATLDAVKFSQYFYEAPIFTIPGRTYPVEILYTKEPETDYLDASLITVMQIHLTEPPGDILVFLTGQEEIDTACEILYERMKSLGPDVPELIILPVYSALPSEMQTRIFDPAPPGSRKVVIATNIAETSLTIDGIYYVVDPGFVKQKVYNSKTGIDQLVVTPISQAQAKQRAGRAGRTGPGKCYRLYTERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPMETLITAMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQNVFYRPKDKQALADQKKAKFHQTEGDHLTLLAVYNSWKNNKFSNPWCYENFIQARSLRRAQDIRKQMLGIMDRHKLDVVSCGKSTVRVQKAICSGFFRNAAKKDPQEGYRTLIDQQVVYIHPSSALFNRQPEWVVYHELVLTTKEYMREVTTIDPRWLVEFAPAFFKVSDPTKLSKQKKQQRLEPLYNRYEEPNAWRISRAFRRR 1220 HSP 2 Score: 92.4337 bits (228), Expect = 1.250e-18 Identity = 63/140 (45.00%), Postives = 81/140 (57.86%), Query Frame = 2
Query: 98 KVCTELENHLGMNDKTLAEFVIMLAGKSSSTEKFEKYLKKNGAEFPDSLVSNLFRLIXXXXXXXXXXXXXXXXXXXXXXXXXFNPELEERKQKYPGLSIPDRAPVTLNXXXXXXXXXXNKEDQAVAMSALSELEALMPKA 517
KVCTEL+NHLG+NDK LAEFVI LA K+++ + F+ L KNGAEF DSL+SNL RLI+TM+P K + E E+ K+ +P L PD V +++D VA+ L ELEALMP A
Sbjct: 33 KVCTELDNHLGINDKDLAEFVISLAEKNTTFDTFKASLVKNGAEFTDSLISNLLRLIQTMRPPAKPSTSKDPVVKPKT-------EKEKLKELFPVLCQPDNPSV---------RTMLDEDDVKVAVDVLKELEALMPSA 156 The following BLAST results are available for this feature:
BLAST of TCONS_00011734 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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