TCONS_00011731 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011731
Unique NameTCONS_00011731
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2383

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011731 ID=TCONS_00011731|Name=TCONS_00011731|organism=Clytia hemisphaerica|type=transcript|length=2383bp
TGGGGCATCACATAGGAAGGGATCCCTCATAGGAAGGACGTTAGGAAGGC
AGCTTCCATCCTCAACCTGCTTTAAATTCACCTTCACTGAAAGACTGATA
CAGAGCTCCACTCTAAGCCTCAGGGAAGAAACATTAAACTTGatttctgg
attttttttaaaagCTTGTTCTTTGTTATGGAGCTGAAACAGTTGCTCCT
CATCCTGACCACTCTTTGCCTTTTGATGTCACTTGCAGATTGTCACTTAC
AATTATGCAGAGGAGAAGTAGAACATACTTTTCCAAAAACTGAATCCACC
CACAGAAagataattttcagaaaatcatcAGATTTCATTTCAAATGTGTT
TTCATATGCAACCATCAACATCACTTCGAACTCCAAATTTGCCATCAACA
GGAGCAACAAGAGTTCAGGCTATTTATCACTTCTGATGTCAAATCATGAT
GCATCTAACAATTATGTCAAAGACAAGCTGTcttgttttgaagattttaa
caTTACGTTGACTCTAGATGAACCTTCGTCCATCAAGTTCATTGTTTTAC
CCAAACGATTTGACCAAATCAGTTTTCTTATCTTTCTCTTTGGTTGCTTT
CTTTTTGTCAATGCAAAATCACTCAGTCGGAGCATGACATTTCTCTATGC
ATCTTGTGCTTCGGTTGGTGTTCTGGCTTCCTGTCTCATCCTGCTCTTCA
TCTGCTACAGATTAGTCCCATACAAGCGAATGATGGCATTCTTGATGACA
GTTGGTTCAGGGATGTGGTTGTATTTTTTGGAACATTTCCAATATATTCT
TGGCTCGTTCATCATGGAGCACCCATATCATGTGACCGCATATCTTTTCA
CTAGCGcaTTACTGTCCATTGCTTTATTGTATTACTATGGTGTCCCTTCA
AATGAAAGAGCATTGAATCTGCTGCAGTGGTCGATGCAGTTGATTGCTGT
GTACCTCATCTACTTCAGCTCTTACAGTAAAGCTTTCTCTATCACTGTGG
TTGTCATCCTCACGATTTTCCAAGTCATCAGTTTCGTTGCGATTGTATCT
GGACTGGTGAAGTTTTGGTGAGCTAATAGCGGGAATTCTCCACATTAGGG
ATACCAGTTTGTTTTGTTGATTGATATGTCggtgtttcatttttttgttc
atgTAACTGCATCACATTGACTCTAAAACGAAGTAtgatgaagtttgatt
tgtCATTCTACAATTTGTTTATAATTAAAAAGCATCGTTCTTTCCTTCTA
ACTAGCAAGCATAAAATACATTGGCACCAAACTTGGGCATTTCTAGTTTT
GTAGAGTGTTGGCGTAGCTGATTTTATAGAGTGTATATCAAATGTTTCTC
CCTCTAATTGAAATATGAAGGTTAAAAGCAATGACAATATCATTTGATGC
CTAATTCATCTTAGCGTTCCAAAAAAATACACCTACCTCATGCAGCCAGC
ACCCAAACATCGTTTCTTATCCATGGAGGAGTACGAACGACAGTGCAAGG
AAACCACCGAACGAGAGCTGAAAGAGTTGAAAGAATATTGTGAAAGTCCT
AAGTGCAATTCATGGAAAGTCGTCTCAAGACTAAAGGATCCGAAAAGGTT
TGCAAGTTTTCTAGAAAGTGGTGATCAATTTACGAACGAAGAAAAAGACG
ATTATTATATCGATCAAGATAACGAGGACGAGGAGGAAGAAGAAACCTTG
CAAAGAGATTCCTCTTTCAAGAAAAGACATATGACAACTGTCTCTACTTC
CGATGATAGTATCGAACTAGAACATTATATGAACGGGCACACCCTGAATC
AAAGAGAATGGATTTCAGATGATGAGAGGAATGAAAGCTTTTTATCTTAG
AAGGAGTCTTTTGGAAGAAGAGTTTTTATCTCCGAAAGATTAGCGCTTTT
CATTCAATAAGCGCCTacatctaaaattaaaaaaagaaattaacgaGTAC
AGctaaaataagaagaaatacTGTAGcaaagatatttttaaagaaggctT
TCAATTATTATTCTAAAGTAAAGTAACATAGACACATACTGTATACGAAC
GATTGATTCTCATCAGCAAGTTGCAAATGTTTGTGTAAATATATTCTTCC
AACTGTCTTTTCTTATTAGTAAATGAGCCTCAATCACCTGATTGTTATAA
ACATTCCTTAACAAAACAGTGACTTGAAATCACGACGcgtaaaaagtaga
aaataggtaACAAATTTATGTAAATATTTATATACGATTATTCTAGCTTc
ggtttttaaaagttttattcttAATATTTATAAGGATCATTTTAAATATT
ACTTGCGATGACTAGCATAATTTGTCAAGTTCATGGTACTTATAACCCTG
AATAATTCTGCACTTAGTCGAAGTCACAACAAG
Run BLAST on NCBI

transcript from alignment at sc0000132:339664..347928+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011731 ID=TCONS_00011731|Name=TCONS_00011731|organism=Clytia hemisphaerica|type=transcript|length=8265bp|location=Sequence derived from alignment at sc0000132:339664..347928+ (Clytia hemisphaerica)
TGGGGCATCACATAGGAAGGGATCCCTCATAGGAAGGACGTTAGGAAGGC
AGCTTCCATCCTCAACCTGCTTTAAATTCACCTTCACTGAAAGACTGATA
CAGAGCTCCACTCTAAGCCTCAGGGAAGAAACATTAAACTTGatttctgg
attttttttaaaaggtatCTATTTNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNTAAGAAGACCCCCCCCTTAACTGGCaaccccccc
ttaggaaagtcatacttttaacaccccccTTTTGGTTCATCAATATCCAA
GACCCCCCTGAATGTaagacgaccctcgacatggcccgagaattcttggg
ccaaaacttttattggatttcgcgtaaagcccgagtatggcccgagctgg
cccgagaattcgggccgNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNaatattaaatgtcttatttggtatgaa
aacatagttataaatatacttagggtggaaatatttgctagtaaactggt
cctggttttaaactgaagcgtgtccatgggaagctcgtaaagttcttttg
agcgatataaacaaaacagacaaatcttattttgtactattttgtttgac
tggacatgctgaatcaatttaacatttgaatgactcgggtcatgttcggg
ccaaaagaattgatagggtatctcggcccgaacatggcccgaagaggccc
gagaattctcgggccatgtcgagggtcgtaatGTAagggggggtagaaac
tatgtcaaaacttttaaaaacttaagaataaattaatgcTTCATCATAAG
TATAAGGCTGTTGTTTTCTTCACTTTAGCTTGTTCTTTGTTATGGAGCTG
AAACAGTTGCTCCTCATCCTGACCACTCTTTGCCTTTTGATGTCACTTGC
AGGTATATCATTTTTATCAATCATTTgagcaacctcgttccctgcccatt
atcagcttttttatgcttactggtagcgctagataataccctggcattgt
ctgGTTTTCAAACGCGTAAGATTAtgtaattaaaaaacaaaacatcaaat
ttcattttgttcTTCGGTTTTGAAGCCATTGCACtgcagtgtaactttgt
aacatcagattttttatgacgtattgttatGAGAAGTACCCCCTCTGAGA
GGgtaactcgcatcagccaacaccagagtattctctggcgtcaatcagtc
gtaacgtaaataaagcctggagtACACGGGTACGAGGTTGTCATTTGAGt
attttattcaaaacaaaagctGCATCTTTCAATAGAATTTGTGCTCCCAA
GTAATTTTAAGTTTGGAAGTGTCTTGTAGCGATTAGACATGCCTTGGTTG
GCTCTTtccaacaaaaaaatgtttcaatgttTTCATTATGATGTATGTTA
AAACAGCCAGCAAAAATGGTAATGGCCGttcaaaatcagattttttATGG
CTTGAAGGCAAAACCTTGCcatagaaatttgaaatttgattgatgCTAGA
CTTCTTTTAAAATACTGAACCAAATTCTCTACTGaagttgtgtataaaat
tgtaaacaaatagataaacttttttgctcagtttctTTTCTACACTGTcc
caaatttttcaagaaagttaaattttttcCGAAATAATACCCTGAAATTT
TCCATGAATGAAATTGAAGTTGAGCTATTGTTGGTGGTGATGATGCTTAA
AGTTCTAGAATTCCACTTCCGTAGCTTTGTATAAAAATTAAGAGTTCTTT
AAGATAATAATCATTCAAGAGTTCTCATATGTATTCTAGATTATGTTATT
GTTTCTCTCAGATTGTCACTTACAATTATGCAGAGGAGAAGTAGAACATA
CTTTTCCAAAAACTGAATCCACCCACAGAAagataattttcagaaaatca
tcAGATTTCATTTCAAATGTGTTTTCATATGCAACCATCAACATCACTTC
GAACTCCAAATTTGCCATCAACAGGTTCCTCGTCGTTTGTAACCTTTTTT
CCAACAGTCTTGTTCAAAATtcatttataatcaatagaAGATCGTAATCG
GCGTATGAATATCATAAgcttttgtttatttcatttttcaataccATATA
GCTGAAAGTATTTACAATAATGTGTTTTAGTTACTCACTAATTCATtcca
ttatattttttttaatcttaagGAGCAACAAGAGTTCAGGCTATTTATCA
CTTCTGATGTCAAATCATGATGCATCTAACAATTATGTCAAAGACAAGCT
GTcttgttttgaagattttaacaTTACGTTGACTCTAGATGAACCTTCGT
CCATCAAGTTCATTGTTTTACCCAAACGTAGGTTGCTAATTAAGACTATC
GTTTCTTTGAACTGGAGGCTCATCCTTTTTCTAGTTAAGACATTAAGACA
TGACAATAATCCATTGACAGTGCAGAACTTGATTTGCAGAACAAATCATG
TCTTAGTGGATCCTGCGGATGTATGAGCTTCACTGCTTACTTTCATTAGC
TTTCTTTTAGGcgttttaattttaaaataataaattatctTTCTTCTCTA
GGATTTGACCAAATCAGTTTTCTTATCTTTCTCTTTGGTTGCTTTCTTTT
TGTCAATGCAAAATCACTCAGTCGGTAAGTCTGCTTATAATTTTATATTA
ATAGCTGTGGTCCACTTAAAGAATATTTTGAtcttttaaaagattatttt
gaattttagctttCTCTACAAATGTAATTTTATCTGATCACTACTTTTGT
TTGGATTGATACAATGATAGAGCCTGATTTANTAGCTGTGGTCCACTTAA
AGAATATTTTGATCTTCTAaaagattattttgaattttagctttCTCTAC
AAATGTAATTTTATCTGATCACTACTTTTGTTTGGATTGATAGAGCCTGA
TTTAATTCAGCCtatgttttgaaattaaagGTCTATCTATATTTTGCACG
TCcctttgtttttccttttttttcttcttttgttaatagacgatatcagc
tttccgaattctccccgaataaTTACCCATGACtgcccatgatgcattgc
gcaaaaaaattcacggacaatattgacttactgaatttttttgcgcaatg
catcatgggtaatcattcggggaaAATTTCGTTAacccgatatcgtctat
tacatGTTCTCGAATACAATTAACGACCTCATTTGATTAAAATGACATTC
GCATTCTTTTCAAAGTGaaataatatctttttttggccCATTTTATAGAA
CAGAAGaaatctaaaataaaacaaaaatcataacattAACAGTTTGTTAC
AGCAACAATATTCAAAAGACGCTACAAATTCTTTTTCCAGGAGCATGACA
TTTCTCTATGCATCTTGTGCTTCGGTTGGTGTTCTGGCTTCCTGTCTCAT
CCTGCTCTTCATCTGCTACAGATTAGTCCCATACAAGGTAAATCCAAAAC
TCCCTATATCTTTTGTGAGTGATCTTAACCCCTTTTTGGAAAtaagaaac
ttttgtgaatatTAAAAACAGTGTTCAGTTGGTATTAATGAAGTGAAATC
GATTGCGATTTTTAGGTCTGACTTAATTTTGTCTACAGAATAGTTACAAA
TATTTTGTTAAAAGATTTTTCGACTTCCCCTTTTTCTGGTGCACGTACAG
CACAGGGGtttaattttccttttcttcCTCCTCCAAAACTTAGTTTACCT
TTTCTTTGACACAGCGAATGATGGCATTCTTGATGACAGTTGGTTCAGGG
ATGTGGTTGTATTTTTTGGAACATTTCCAATATATTCTTGGCTCGTTCAT
CATGGAGCACCCATATCATGTGACCGCATATCTTTTCACTAGCGGTAATG
TATTCTCACTTTCACTTGTGAGCAAAGAAAATTAACTTATTATAAACATA
ACAGGCCCTTTAAAGGGGGACTAAACAATTTTTTGAGGTCATCCTTTTTT
GTCATCAAGTACTACATAATATTATAGTATAgcttccaaaaaatatcact
ttcactctagtctacacaatagacagctccaggctttttgGCCttacaca
aagaaatacagccacTTTAAGACCAACTACTGTCAGCTCTATTgtgattt
ttgacgtcaaatcttgtcttgatcgtactgacgtcggtatgtttttgaac
ttcaagcgggtgtatttctttgtgtgttttagtcagagagttgttgtaat
acatttttttgctcagaatttcatgctctatcagatAGTACCAATCATTT
TGGTATGATTTTGGCAATCATTTTACCAATCAAAGCTTGAGTCTGATGTA
TTTCCTGTTACTATTTAAGCCAAGTCCTTTCCCTTACATGAATCATTGAa
gagtttatttatttatttttcagcaTTACTGTCCATTGCTTTATTGTATT
ACTATGGTGTCCCTTCAAATGAAAGAGCATTGAATCTGCTGCAGTGGTCG
ATGCAGTTGATTGCTGTGTACCTCATCTACTTCAGCTCTTACAGTAAAGC
TTTCTCTATCACTGTGGTTGTCATCCTCACGATTTTCCAAGTCATCAGTT
TCGTTGCGATTGTATCTGGACTGGTGAAGTTTTGGTGAGCTAATAGCGGG
AATTCTCCACATTAGGGATACCAGTTTGTTTTGTTGATTGATATGTCggt
gtttcatttttttgttcatgTAACTGCATCACATTGACTCTAAAACGAAG
TAtgatgaagtttgatttgtCATTCTACAATTTGTTTATAATTAAAAAGC
ATCGTTCTTTCCTTCTAACTAGCAAGCATAAAATACATTGGCACCAAACT
TGGGCATTTCTAGTTTTGTAGAGTGTTGGCGTAGCTGATTTTATAGAGTG
TATATCAAATGTTTCTCCCTCTAATTGAAATATGAAGGTTAAAAGCAATG
ACAATATCATTTGATGCCTAATTCATCTTAGCGTTCCAAAAAAATACACC
TACCTCATGCAGCCAGCACCCAAACATCGTTTCTTATCCATGGAGGAGTA
CGAACGACAGTGCAAGGAAACCACCGAACGAGAGCTGAAAGAGTTGAAAG
AATATTGTGAAAGTCCTAAGTGCAATTCATGGAAAGTCGTCTCAAGACTA
AAGGATCCGAAAAGGTGATATTGCTGTACAGTCaatagagtctccataac
tcgaatatgCACAGGGACTTTGGAGTTATAagattcgagttatggaggct
cTATTGTGGTTAAGAACATTATTTAACCAAAAAGAttgattttcattaat
ttttgtaaTCAAGTTTTAAACTCATTTCGGTACTAGCTCAAGTTCAACAG
ACCAACACTTATATGGTTGTTGTAAAGATAATTTGTCACATTAACCTAAT
TGTTTGTATAACCTAACTTTCTTTGATAGGTTTGCAAGTTTTCTAGAAAG
TGGTGATCAATTTACGAACGAAGAAAAAGACGATTATTATATCGATCAAG
ATAACGAGGACGAGGAGGAAGAAGAAACCTTGCAAAGAGATTCCTCTTTC
AAGAAAAGACATATGACAACTGTCTCTACTTCCGATGATAGTATCGAACT
AGAACATTATATGAACGGGCACACCCTGAATCAAAGAGAATGGATTTCAG
ATGATGAGAGGAATGAAAGCTTTTTATCTTAGAAGGAGTCTTTTGGAAGA
AGAGTTTTTATCTCCGAAAGATTAGCGCTTTTCATTCAATAAGCGCCTac
atctaaaattaaaaaaagaaattaacgaGTACAGctaaaataagaagaaa
tacTGTAGcaaagatatttttaaagaaggctTTCAATTATTATTCTAAAG
TAAAGTAACATAGACACATACTGTATACGAACGATTGATTCTCATCAGCA
AGTTGCAAATGTTTGTGTAAATATATTCTTCCAACTGTCTTTTCTTATTA
GTAAATGAGCCTCAATCACCTGATTGTTATAAACATTCCTTAACAAAACA
GTGACTTGAAATCACGACGcgtaaaaagtagaaaataggtaACAAATTTA
TGTAAATATTTATATACGATTATTCTAGCTTcggtttttaaaagttttat
tcttAATATTTATAAGGATCATTTTAAATATTACTTGCGATGACTAGCAT
AATTTGTCAAGTTCATGGTACTTATAACCCTGAATAATTCTGCACTTAGT
CGAAGTCACAACAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006593XLOC_006593Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011731-exon-sc0000132-1491911889:339664..339827TCONS_00011731-exon-sc0000132-1491911889:339664..339827Clytia hemisphaericaexon
TCONS_00011731-exon-sc0000132-1510915933:339664..339827TCONS_00011731-exon-sc0000132-1510915933:339664..339827Clytia hemisphaericaexon
TCONS_00011731-exon-sc0000132-1575043694:339664..339827TCONS_00011731-exon-sc0000132-1575043694:339664..339827Clytia hemisphaericaexon
TCONS_00011731-exon-sc0000132-1491911889:342592..342665TCONS_00011731-exon-sc0000132-1491911889:342592..342665Clytia hemisphaericaexon
TCONS_00011731-exon-sc0000132-1510915933:342592..342665TCONS_00011731-exon-sc0000132-1510915933:342592..342665Clytia hemisphaericaexon
TCONS_00011731-exon-sc0000132-1575043694:342592..342665TCONS_00011731-exon-sc0000132-1575043694:342592..342665Clytia hemisphaericaexon
TCONS_00011731-exon-sc0000132-1491911889:343575..343737TCONS_00011731-exon-sc0000132-1491911889:343575..343737Clytia hemisphaericaexon
TCONS_00011731-exon-sc0000132-1510915933:343575..343737TCONS_00011731-exon-sc0000132-1510915933:343575..343737Clytia hemisphaericaexon
TCONS_00011731-exon-sc0000132-1575043694:343575..343737TCONS_00011731-exon-sc0000132-1575043694:343575..343737Clytia hemisphaericaexon
TCONS_00011731-exon-sc0000132-1491911889:343936..344090TCONS_00011731-exon-sc0000132-1491911889:343936..344090Clytia hemisphaericaexon
TCONS_00011731-exon-sc0000132-1510915933:343936..344090TCONS_00011731-exon-sc0000132-1510915933:343936..344090Clytia hemisphaericaexon
TCONS_00011731-exon-sc0000132-1575043694:343936..344090TCONS_00011731-exon-sc0000132-1575043694:343936..344090Clytia hemisphaericaexon
TCONS_00011731-exon-sc0000132-1491911889:344315..344387TCONS_00011731-exon-sc0000132-1491911889:344315..344387Clytia hemisphaericaexon
TCONS_00011731-exon-sc0000132-1510915933:344315..344387TCONS_00011731-exon-sc0000132-1510915933:344315..344387Clytia hemisphaericaexon
TCONS_00011731-exon-sc0000132-1575043694:344315..344387TCONS_00011731-exon-sc0000132-1575043694:344315..344387Clytia hemisphaericaexon
TCONS_00011731-exon-sc0000132-1491911889:345104..345200TCONS_00011731-exon-sc0000132-1491911889:345104..345200Clytia hemisphaericaexon
TCONS_00011731-exon-sc0000132-1510915933:345104..345200TCONS_00011731-exon-sc0000132-1510915933:345104..345200Clytia hemisphaericaexon
TCONS_00011731-exon-sc0000132-1575043694:345104..345200TCONS_00011731-exon-sc0000132-1575043694:345104..345200Clytia hemisphaericaexon
TCONS_00011731-exon-sc0000132-1491911889:345478..345607TCONS_00011731-exon-sc0000132-1491911889:345478..345607Clytia hemisphaericaexon
TCONS_00011731-exon-sc0000132-1510915933:345478..345607TCONS_00011731-exon-sc0000132-1510915933:345478..345607Clytia hemisphaericaexon
TCONS_00011731-exon-sc0000132-1575043694:345478..345607TCONS_00011731-exon-sc0000132-1575043694:345478..345607Clytia hemisphaericaexon
TCONS_00011731-exon-sc0000132-1491911889:346137..346877TCONS_00011731-exon-sc0000132-1491911889:346137..346877Clytia hemisphaericaexon
TCONS_00011731-exon-sc0000132-1510915933:346137..346877TCONS_00011731-exon-sc0000132-1510915933:346137..346877Clytia hemisphaericaexon
TCONS_00011731-exon-sc0000132-1575043694:346137..346877TCONS_00011731-exon-sc0000132-1575043694:346137..346877Clytia hemisphaericaexon
TCONS_00011731-exon-sc0000132-1491911889:347143..347928TCONS_00011731-exon-sc0000132-1491911889:347143..347928Clytia hemisphaericaexon
TCONS_00011731-exon-sc0000132-1510915933:347143..347928TCONS_00011731-exon-sc0000132-1510915933:347143..347928Clytia hemisphaericaexon
TCONS_00011731-exon-sc0000132-1575043694:347143..347928TCONS_00011731-exon-sc0000132-1575043694:347143..347928Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000132supercontigsc0000132:339664..347928 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.326402	0.260981	0.774345	1.34164	0.58806	0.526911	0.545527	0.499103	1.28271	0.98976	0.640986	1.33646	0.957831	1.18134	1.28251	0.94736	0.664713	0.555486	0.608925	1.26441	1.39829	1.45351	1.53845	1.11562	1.32103	1.17347	1.29091	2.08417	1.60362	1.0116
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00011731 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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