Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011730 ID=TCONS_00011730|Name=TCONS_00011730|organism=Clytia hemisphaerica|type=transcript|length=2053bpRun BLAST on NCBI protein sequence of TCONS_00011730-protein >TCONS_00011730-protein ID=TCONS_00011730-protein|Name=TCONS_00011730-protein|organism=Clytia hemisphaerica|type=polypeptide|length=441bp MELKQLLLILTTLCLLMSLADCHLQLCRGEVEHTFPKTESTHRKIIFRKSRun BLAST on NCBI transcript from alignment at sc0000132:339647..347928+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00011730 ID=TCONS_00011730|Name=TCONS_00011730|organism=Clytia hemisphaerica|type=transcript|length=8282bp|location=Sequence derived from alignment at sc0000132:339647..347928+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000132:339647..347928+ >TCONS_00011730 ID=TCONS_00011730|Name=TCONS_00011730|organism=Clytia hemisphaerica|type=CDS|length=11934bp|location=Sequence derived from alignment at sc0000132:339647..347928+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2 Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00011730 vs. Swiss-Prot (Human)
Match: NEMP1 (Nuclear envelope integral membrane protein 1 OS=Homo sapiens GN=NEMP1 PE=1 SV=2) HSP 1 Score: 106.301 bits (264), Expect = 2.840e-24 Identity = 84/256 (32.81%), Postives = 135/256 (52.73%), Query Frame = 3 Query: 558 IVLPKRFDQISFLIFLFGCFLFVNAKSLSRSMTFLYASCASVGVLASCLILLFICYRLVPYKRMMAFLMTVGSGMWLYFLEHFQYILGSFIMEHPYHVTAYLFTXXXXXXXXXXXXGVPSNERALNLLQWSMQLIAVYLIY----FSSYSKAFSITVVVILTIFQVISFVAIVSGLVKFCVPKKYTYLMQPAPKHRFLSMEEYERQCXXXXXXXXXXXXXYCESPKCNSWKVVSRLKDPKRFASFLESGDQFTNEE 1313 +++ +RFD FL+FL G LF LSRS F Y++ +VG++AS LI++FI + +P K + ++ G LY ++ L + ++ +Y+ T +S A+ Y YG NER++NLL W++QL+ + +Y + A I + + I ++ I K C + +P P R L+ EEY Q + T + L+EL+E+C SP C++WK VSR++ PKRFA F+E T E Sbjct: 153 VIVIRRFDPKLFLVFLLGLMLFFCGDLLSRSQIFYYSTGMTVGIVASLLIIIFILSKFMPKKSPIYVILVGGWSFSLYLIQLVFKNLQEIWRCYWQYLLSYVLTVGFMSFAVCYKYGPLENERSINLLTWTLQLMGLCFMYSGIQIPHIALAIIIIALCTKNLEHPIQWLYITCR--KVCKGAE-----KPVPP-RLLTEEEYRIQGEVETRKALEELREFCNSPDCSAWKTVSRIQSPKRFADFVEGSSHLTPNE 400 The following BLAST results are available for this feature:
BLAST of TCONS_00011730 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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