TCONS_00011718 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011718
Unique NameTCONS_00011718
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1191

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011718 ID=TCONS_00011718|Name=TCONS_00011718|organism=Clytia hemisphaerica|type=transcript|length=1191bp
TACACAATGAATTGTGATGACTCAACACAACGTCAACAAACCTTCCACAA
AATGTGTTCCTACACAAATGAGGAGGAGAACCAATCACCTCTTTTCATAT
CAGACCACGTGACAATATCACTTCAGATGTGTATAAATGGATGGAAATAT
GGACAATCTCTAAACAGTGAGTGCAGCTCATAAAGTAAGAAACTTTCTTG
TTTCATGAAAAGCAACTTAAAGACGAAGAGCGCGCTTTTGTTGGATTGTG
TTTTTTCCTCCAAATTTTCAACCAATCATGGAAAAGATGGATATTCGCCC
TGCCTCAACGCCCAAATCACAAAAAGTCTTCTATGGAGTAGGTCACATTT
TGAACGATCTCTGCGCCAACTGCTGGTTCAGCTACGTACTTTTGTATTGG
ACTAAAATCGTCGGTCTTTCCGAAACTGACGCTGGGTTGTTGTTACTGAT
CGGACAAGTAGCGGATGCCGTCAGCACCATTTTTATCGGCTACGCATGCG
ATCGAACAAAGTTTCGTTGGTATGGAAAACGTAAATTGTGGCATCTGATT
GGCTGTGCGTGTGTTCTGGTCAGTTTTCCTTTCATCTTCAATGTTTGTCT
CAGCTGTGAAGATGCATCGGAAACAAGCAAAATGTTTTATTATGCGACTT
TCGTAATTCTCTTTCAATTTGGATGGGCGTCCACTGAAAACTCCCATTTA
GCGTTGATTCCAGAGATCGCCAAACGAACCTCCGATATCGTTCAATTGAA
TGCTATCAGGTCTGGATTCTTTTTCATTTGTGGAATATTCGTTTATGGCT
TGACGTGGATTTTATTGGGTGGTGCCGAAGGCGTTGAAGTCGACCCATCA
CTCGCCCCTCAATTCAAATACCTTTCACTCGTGGTGGTGGCAGTGGGTTT
CTTTTTTGTCACCATTTTCCACTTcggaacaaaagaagaaaaatactGCC
CGCCCTCCTCCCATGACTTGGAATCCGCTGACACCAATTCTGAGGGATCA
ACAACAACGAATAAGGATAAGATCAAAACATGGAAAGATTGGTTGAGGGA
TTCTCGCTTCTACAAGACAGGACTTTTGTACATGTGTACTCGATTGTCTA
TAAACATCTTCCAATCATTCCTCGTCCTATATTTGACAGATGCCTTACAT
TTTCAAAAGGAAGCAATAGCATACTTCCCATTGATCGTTCT
Run BLAST on NCBI

transcript from alignment at sc0000132:42448..44218+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011718 ID=TCONS_00011718|Name=TCONS_00011718|organism=Clytia hemisphaerica|type=transcript|length=1771bp|location=Sequence derived from alignment at sc0000132:42448..44218+ (Clytia hemisphaerica)
TACACAATGAATTGTGATGACTCAACACAACGTCAACAAACCTTCCACAA
AATGTGTTCCTACACAAATGAGGAGGAGAACCAATCACCTCTTTTCATAT
CAGACCACGTGACAATATCACTTCAGATGTGTATAAATGGATGGAAATAT
GGACAATCTCTAAACAGTGAGTGCAGCTCATAAAGTAAGAAACTTTCTTG
TTTCATGAAAAGCAACTTAAAGACGAAGAGCGCGCTTTTGTTGGATTGTG
TTTTTTCCTCCAAATGTAAGTATTCTTTCTTTCTCAACAAACTTGACTTT
TGACACGTTGACATTTGCATTGCGTTAAACCTGCTCATTTTTCTTAATAG
TTTCAACCAATCATGGAAAAGATGGATATTCGCCCTGCCTCAACGCCCAA
ATCACAAAAAGTCTTCTATGGAGTAGGTCACATTTTGAACGATCTCTGCG
CCAACTGCTGGTTCAGCTACGTACTTTTGTATTGGACTAAAATCGTCGGT
CTTTCCGAAACTGACGCTGGGTTGTTGTTACTGATCGGACAAGTAGCGGA
TGCCGTCAGCACCATTTTTATCGGCTACGCATGCGATCGAACAAAGTTTC
GTTGGTATGGAAAACGTAAATTGTGGCATCTGATTGGCTGTGCGTGTGTT
CTGGTCAGTTTTCCTTTCATCTTCAATGTTTGTCTCAGCTGTGAAGATGC
ATCGGAAACAAGCAAAATGTTTTATTATGCGACTTTCGTAATTCTCTTTC
AATTTGGATGGGCGTCCACTGAAAACTCCCATTTAGCGTTGATTCCAGAG
ATCGCCAAACGAACCTCCGATATCGTTCAATTGAATGCTATCAGGTAAGc
ttcatttttatgaaaagtaaGAATACCTGTTATTAATGATCTTTTAAACT
GTAAGGACAGTCCTTTCCGCATGTTTTCCATTTACACGTCATTCTTTGTC
ATCTTCAAGGTCTGGATTCTTTTTCATTTGTGGAATATTCGTTTATGGCT
TGACGTGGATTTTATTGGGTGGTGCCGAAGGCGTTGAAGTCGACCCATCA
CTCGCCCCTCAATTCAAAGTAAGAAAACTCATTTTTAATGGTTACGTCAC
ATACATTGAATTTCTCGAAACAATTAATTCATGACAGTGATATGAGCTTC
AAAAACCTCGAAGAGATCATgaacaaaaaaatctaaataaagatgACCAC
ATACTCGGCTTACTTTTCAAATAAGAAATAGCGCTTTTTTGTTATgtaaa
acaaaaaactatttcCATGCTTTACGAAGAGCCCAAGCTCCTTCACTTAC
TACATCTTGCACAAAGAACAGATCTGACAAACCTGTTGCTTTTCTTTCCA
GTACCTTTCACTCGTGGTGGTGGCAGTGGGTTTCTTTTTTGTCACCATTT
TCCACTTcggaacaaaagaagaaaaatactGCCCGCCCTCCTCCCATGAC
TTGGAATCCGCTGACACCAATTCTGAGGGATCAACAACAACGAATAAGGA
TAAGATCAAAACATGGAAAGATTGGTTGAGGGATTCTCGCTTCTACAAGA
CAGGACTTTTGTACATGTGTACTCGATTGTCTATAAACATCTTCCAATCA
TTCCTCGTCCTATATTTGACAGATGCCTTACATTTTCAAAAGGTAAACAT
CCAAATCTTGACCGATATATTTTTTAGCTTGTCAAGAACAAACACAAGGT
TAATGTAAAATAAacgaaaacttttttctatcTTCTCAGGAAGCAATAGC
ATACTTCCCATTGATCGTTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006588XLOC_006588Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011718-exon-sc0000132-1491911889:42448..42712TCONS_00011718-exon-sc0000132-1491911889:42448..42712Clytia hemisphaericaexon
TCONS_00011718-exon-sc0000132-1510915933:42448..42712TCONS_00011718-exon-sc0000132-1510915933:42448..42712Clytia hemisphaericaexon
TCONS_00011718-exon-sc0000132-1575043694:42448..42712TCONS_00011718-exon-sc0000132-1575043694:42448..42712Clytia hemisphaericaexon
TCONS_00011718-exon-sc0000132-1491911889:42798..43291TCONS_00011718-exon-sc0000132-1491911889:42798..43291Clytia hemisphaericaexon
TCONS_00011718-exon-sc0000132-1510915933:42798..43291TCONS_00011718-exon-sc0000132-1510915933:42798..43291Clytia hemisphaericaexon
TCONS_00011718-exon-sc0000132-1575043694:42798..43291TCONS_00011718-exon-sc0000132-1575043694:42798..43291Clytia hemisphaericaexon
TCONS_00011718-exon-sc0000132-1491911889:43407..43515TCONS_00011718-exon-sc0000132-1491911889:43407..43515Clytia hemisphaericaexon
TCONS_00011718-exon-sc0000132-1510915933:43407..43515TCONS_00011718-exon-sc0000132-1510915933:43407..43515Clytia hemisphaericaexon
TCONS_00011718-exon-sc0000132-1575043694:43407..43515TCONS_00011718-exon-sc0000132-1575043694:43407..43515Clytia hemisphaericaexon
TCONS_00011718-exon-sc0000132-1491911889:43799..44089TCONS_00011718-exon-sc0000132-1491911889:43799..44089Clytia hemisphaericaexon
TCONS_00011718-exon-sc0000132-1510915933:43799..44089TCONS_00011718-exon-sc0000132-1510915933:43799..44089Clytia hemisphaericaexon
TCONS_00011718-exon-sc0000132-1575043694:43799..44089TCONS_00011718-exon-sc0000132-1575043694:43799..44089Clytia hemisphaericaexon
TCONS_00011718-exon-sc0000132-1491911889:44187..44218TCONS_00011718-exon-sc0000132-1491911889:44187..44218Clytia hemisphaericaexon
TCONS_00011718-exon-sc0000132-1510915933:44187..44218TCONS_00011718-exon-sc0000132-1510915933:44187..44218Clytia hemisphaericaexon
TCONS_00011718-exon-sc0000132-1575043694:44187..44218TCONS_00011718-exon-sc0000132-1575043694:44187..44218Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000132supercontigsc0000132:42448..44218 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.0384997	0	0.133529	0.0608888	0.135941	0	0.0721832	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.101494	0.403352	0	0
Blast
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BLAST of TCONS_00011718 vs. Swiss-Prot (Human)
Match: MFS12 (Major facilitator superfamily domain-containing protein 12 OS=Homo sapiens GN=MFSD12 PE=1 SV=2)

HSP 1 Score: 238.039 bits (606), Expect = 1.321e-72
Identity = 131/304 (43.09%), Postives = 181/304 (59.54%), Query Frame = 2 
Query:  323 KVFYGVGHILNDLCANCWFSYVLLYWTKIVGLSETDAGLLLLIGQVADAVSTIFIGYACDRTKF--RWYGKRKLWHLIGCACVLVSFPFIFNVCLSCEDAS-ETSKMFYYATFVILFQFGWASTENSHLALIPEIAKRTSDIVQLNAIRSGFFFICGIFVYGLTWILLGGAEGVEVDPSL------------APQFKYLSLVVVAVGFFFVTIFHFGTKEEKYCPPSSHDLESADTNSEGSTTTNKDKIKTWKDWLRDSRFYKTGLLYMCTRLSINIFQSFLVLYLTDALHFQKEAIAYFPLIV 1189
            ++ Y VGH LNDLCA+ WF+Y+LLY   +   S   AGLLLL+GQVAD + T  +GY  DR       YG RK WHL+G  CVL+SFPFIF+ CL C  A+ E + + YY  F+++FQFGWAST+ SHL+LIPE+     + V+L A+R  F  +  I VYG  W+LL       V+P+              P F+ LSL+VV VG  F  +FH GT+E +      H  E  +     +  T +  +  WK WLR+  FY+ G+LYM TRL +N+ Q+++ +YLT +LH  K+ IA  PL++
Sbjct:   22 RLSYAVGHFLNDLCASMWFTYLLLYLHSVRAYSSRGAGLLLLLGQVADGLCTPLVGYEADRAASCCARYGPRKAWHLVGTVCVLLSFPFIFSPCLGCGAATPEWAALLYYGPFIVIFQFGWASTQISHLSLIPELVTNDHEKVELTALRYAFTVVANITVYGAAWLLLHLQGSSRVEPTQDISISDQLGGQDVPVFRNLSLLVVGVGAVFSLLFHLGTRERR----RPHAEEPGEHTPLLAPATAQ-PLLLWKHWLREPAFYQVGILYMTTRLIVNLSQTYMAMYLTYSLHLPKKFIATIPLVM 320
The following BLAST results are available for this feature:
BLAST of TCONS_00011718 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MFS121.321e-7243.09Major facilitator superfamily domain-containing pr... [more]
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