TCONS_00011688 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011688
Unique NameTCONS_00011688
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1216

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011688 ID=TCONS_00011688|Name=TCONS_00011688|organism=Clytia hemisphaerica|type=transcript|length=1216bp
GAAAAGACAAGCTAAACCTGTTTTTTGACGAAAAGTTTGTACGTCAAATT
AGACGTAATAATTACAAGGTACTGAAAGCAGGAAAATGAGGCTCATTATA
AAAATACTACATTTGGTTTGGAAAAGTCAGACTTAAACGGACAAACAGTA
CAAGAAGGTGTACAAGCCAAACATTACTCAAGCAACATTAACATTTGAAT
TGGAAGtacatatttttagaaaatgggAAGCTGGATTTCATTCGATAAAG
ACCACGAATCAGTTGCAAAAGTCAAGCAATATTGTGAATCGGTCGTTTTT
GTGCAATTCTACGGACAGACGAACGACTTAAAGGGTTCCACTGACAACAT
CAATGGAAAACCAAAATCGGAGCTTGGCCACTTGCTCAGTGAACTTGATA
AAGAGGTTCGAAAGGCTTCGAGAATTGAGGAATTAGAAATCACTGAATCa
atgaagaatattttaaggaaaATGGCAGAGATCAGAGTTTGCATGGCCGA
TTGTGAAACTGTCGAAGATTGTCATCAAAAGCTGTTGAATGATGCCGAAC
GATTCCAAGCAATTTACCAAAAACGTGGCCATGAATCAGAAGTTCTGGAA
GAAAAGCACTCGTTTTATTGGGGTACACGACAACAGCTTCTATTCGGAAA
AGTCATTTGTGATTGGCTTGCGACGCAAGATAGAGAAAAAGCACCGATGG
ACCCTATATTTGGTACTCTCCTTAACCCGACTGGAGGACGAGTTGGTCCA
GGCGATACCGGATTTTTCCACGACTCCCTTTTTGACGATATGGGTCCCTT
TGCTTACCATTCAGCAGTCCACGACGGCTTTGGTTACTTAATAACAAAGC
ACAAGACTGGACCTGGGTACGCTTACCTCAATAAAGGTCTTTTTGGTGAT
TGGAGCCCGTTTGGTGGCCAACTTTATGGCATCAAATATTGGGAGAAAAT
ATGCGAAAAATACCATCCTGATAGAGCAACTTTGGAgcaatttatttttc
tatgatttcaagtagtaagtttttattttcatttttgagtatttttttta
ttttgatggcAATGTAAACGTGTAAATATATTATTTGGATATTTAGTTGT
ACCATTATTCAGTTGACCAGTTTTACGGTCCAAGTTTGTATATATAATGA
AAAGCAATTTTATTTTGGTTCAACACGCACCAAGTATTCTGAAATATAAT
TAGTACCTGAAAATAT
Run BLAST on NCBI

protein sequence of TCONS_00011688-protein

>TCONS_00011688-protein ID=TCONS_00011688-protein|Name=TCONS_00011688-protein|organism=Clytia hemisphaerica|type=polypeptide|length=260bp
MGSWISFDKDHESVAKVKQYCESVVFVQFYGQTNDLKGSTDNINGKPKSE
LGHLLSELDKEVRKASRIEELEITESMKNILRKMAEIRVCMADCETVEDC
HQKLLNDAERFQAIYQKRGHESEVLEEKHSFYWGTRQQLLFGKVICDWLA
TQDREKAPMDPIFGTLLNPTGGRVGPGDTGFFHDSLFDDMGPFAYHSAVH
DGFGYLITKHKTGPGYAYLNKGLFGDWSPFGGQLYGIKYWEKICEKYHPD
RATLEQFIFL
Run BLAST on NCBI

transcript from alignment at sc0000131:491520..493469-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011688 ID=TCONS_00011688|Name=TCONS_00011688|organism=Clytia hemisphaerica|type=transcript|length=1950bp|location=Sequence derived from alignment at sc0000131:491520..493469- (Clytia hemisphaerica)
GAAAAGACAAGCTAAACCTGTTTTTTGACGAAAAGTTTGTACGTCAAATT
AGACGTAATAATTACAAGGTACTGAAAGCAGGAAAATGAGGCTCATTATA
AAAATACTACATTTGGTTTGGAAAAGTCAGACTTAAACGGACAAACAGTA
CAAGAAGGTGTACAAGCCAAACATTACTCAAGCAACATTAACATTTGAAT
TGGAAGTACATATTTTTAGAAAATGGGAAGCTGGATTTCATTCGATAAAG
ACCACGAATCAGTTGCAAAAGTCAAGCAATATTGTGAATCGGTCGTTTTT
GTGCAATTCTACGGACAGACGAACGACTTAAAGGTATGTTTTCACTATCG
TCTTTTCGTTCAACGTGATCTTTTGAGATAGTAGCTATCCTGTCTCAACA
CTTTAAAACTCCGAAATGTTTGCGTCTCCTCGGAGTACGCTGACATCTGA
CAGTATCGTCATATGCCATTTCACAGTCAAAATGAATCATGAGTAGTCGG
GACTTCTTGCGCTCTAACAACGACCATTTGGCTAAACGTAAAAATCTTCA
TAATTTTTCAAAACTTCAGACTAATAGTAAGTCGTCATTAGCGCGCAGAT
GTTCTGACTACCCATTACGCTTTGCAAGTGTGAAATGGCCTATAGATGCA
AGGAAAGTGTCATTCAACAAAATAAGAGAGTCAGTCTTGTGTTTCTATTC
AGGGTTCCACTGACAACATCAATGGAAAACCAAAATCGGAGCTTGGCCAC
TTGCTCAGTGAACTTGATAAAGAGGTTCGAAAGGCTTCGAGAATTGAGGA
ATTAGAAATCACTGAATCAATGAAGAATATTTTAAGGAAAATGGCAGAGA
TCAGAGTTTGCATGGCCGATTGTGAAACTGTCGAAGATTGTCATCAAAAG
CTGTTGAATGATGCCGAACGATTCCAAGCAATTTACCAAAAACGTGGCCG
TAAGTCATTTTATTTTCTATGTTTTATCAAGTATACATGAAAAAAACGAA
ATTTCTTCATAGATTACCTCAAAGTTAGATAAGCCTCTGTTTGAATTTAT
CAATCACCACTTTCCCGTGAAAAAGGTCTGCGCCTTGTTCATAAGTATTG
ATTCTCCCTGTTTAACTTAGCTCACTTTACTTACCTTTACAACAATCTTT
TTTCAGATGAATCAGAAGTTCTGGAAGAAAAGCACTCGTTTTATTGGGGT
ACACGACAACAGCTTCTATTCGGAAAAGTCATTTGTGATTGGCTTGCGAC
GCAAGATAGAGAAAAAGCACCGATGGACCCTATATTTGGTACTCTCCTTA
ACCCGACTGGAGGTAGGTTTGATTGTTTTTATTGTAAATTTAGAATCACA
TGATGACATACCTTTTGAAATAGGACATGTAGTTCAATAAGATTATGCTA
AAGTCTATGTATGACGAGTTTGTTTATACTATATAACTATACTTTAATTG
ATATAATTATGTTTTTTTAGGACGAGTTGGTCCAGGCGATACCGGATTTT
TCCACGACTCCCTTTTTGACGATATGGGTCCCTTTGCTTACCATTCAGCA
GTCCACGACGGCTTTGGTTACTTAATAACAAAGCACAAGACTGGACCTGG
GTACGCTTACCTCAATAAAGGTCTTTTTGGTGATTGGAGCCCGTTTGGTG
GCCAACTTTATGGCATCAAATATTGGGAGAAAATATGCGAAAAATACCAT
CCTGATAGAGCAACTTTGGAGCAATTTATTTTTCTATGATTTCAAGTAGT
AAGTTTTTATTTTCATTTTTGAGTATTTTTTTTATTTTGATGGCAATGTA
AACGTGTAAATATATTATTTGGATATTTAGTTGTACCATTATTCAGTTGA
CCAGTTTTACGGTCCAAGTTTGTATATATAATGAAAAGCAATTTTATTTT
GGTTCAACACGCACCAAGTATTCTGAAATATAATTAGTACCTGAAAATAT

Coding sequence (CDS) from alignment at sc0000131:491520..493469-

>TCONS_00011688 ID=TCONS_00011688|Name=TCONS_00011688|organism=Clytia hemisphaerica|type=CDS|length=3132bp|location=Sequence derived from alignment at sc0000131:491520..493469- (Clytia hemisphaerica)
GACGAGTTGGTCCAGGCGATACCGGATTTTTCCACGACTCCCTTTTTGAC
GATATGGGTCCCTTTGCTTACCATTCAGCAGTCCACGACGGCTTTGGTTA
CTTAATAACAAAGCACAAGACTGGACCTGGGTACGCTTACCTCAATAAAG
GTCTTTTTGGTGATTGGAGCCCGTTTGGTGGCCAACTTTATGGCATCAAA
TATTGGGAGAAAATATGCGAAAAATACCATCCTGATAGAGCAACTTTGGA
GCAATTTATTTTTCTATGAATGAATCAGAAGTTCTGGAAGAAAAGCACTC
GTTTTATTGGGGTACACGACAACAGCTTCTATTCGGAAAAGTCATTTGTG
ATTGGCTTGCGACGCAAGATAGAGAAAAAGCACCGATGGACCCTATATTT
GGTACTCTCCTTAACCCGACTGGAGGGTTCCACTGACAACATCAATGGAA
AACCAAAATCGGAGCTTGGCCACTTGCTCAGTGAACTTGATAAAGAGGTT
CGAAAGGCTTCGAGAATTGAGGAATTAGAAATCACTGAATCAATGAAGAA
TATTTTAAGGAAAATGGCAGAGATCAGAGTTTGCATGGCCGATTGTGAAA
CTGTCGAAGATTGTCATCAAAAGCTGTTGAATGATGCCGAACGATTCCAA
GCAATTTACCAAAAACGTGGCCATGGGAAGCTGGATTTCATTCGATAAAG
ACCACGAATCAGTTGCAAAAGTCAAGCAATATTGTGAATCGGTCGTTTTT
GTGCAATTCTACGGACAGACGAACGACTTAAAGGACGAGTTGGTCCAGGC
GATACCGGATTTTTCCACGACTCCCTTTTTGACGATATGGGTCCCTTTGC
TTACCATTCAGCAGTCCACGACGGCTTTGGTTACTTAATAACAAAGCACA
AGACTGGACCTGGGTACGCTTACCTCAATAAAGGTCTTTTTGGTGATTGG
AGCCCGTTTGGTGGCCAACTTTATGGCATCAAATATTGGGAGAAAATATG
CGAAAAATACCATCCTGATAGAGCAACTTTGGAGCAATTTATTTTTCTAT
GAATGAATCAGAAGTTCTGGAAGAAAAGCACTCGTTTTATTGGGGTACAC
GACAACAGCTTCTATTCGGAAAAGTCATTTGTGATTGGCTTGCGACGCAA
GATAGAGAAAAAGCACCGATGGACCCTATATTTGGTACTCTCCTTAACCC
GACTGGAGGGTTCCACTGACAACATCAATGGAAAACCAAAATCGGAGCTT
GGCCACTTGCTCAGTGAACTTGATAAAGAGGTTCGAAAGGCTTCGAGAAT
TGAGGAATTAGAAATCACTGAATCAATGAAGAATATTTTAAGGAAAATGG
CAGAGATCAGAGTTTGCATGGCCGATTGTGAAACTGTCGAAGATTGTCAT
CAAAAGCTGTTGAATGATGCCGAACGATTCCAAGCAATTTACCAAAAACG
TGGCCATGGGAAGCTGGATTTCATTCGATAAAGACCACGAATCAGTTGCA
AAAGTCAAGCAATATTGTGAATCGGTCGTTTTTGTGCAATTCTACGGACA
GACGAACGACTTAAAGGACGAGTTGGTCCAGGCGATACCGGATTTTTCCA
CGACTCCCTTTTTGACGATATGGGTCCCTTTGCTTACCATTCAGCAGTCC
ACGACGGCTTTGGTTACTTAATAACAAAGCACAAGACTGGACCTGGGTAC
GCTTACCTCAATAAAGGTCTTTTTGGTGATTGGAGCCCGTTTGGTGGCCA
ACTTTATGGCATCAAATATTGGGAGAAAATATGCGAAAAATACCATCCTG
ATAGAGCAACTTTGGAGCAATTTATTTTTCTATGAATGAATCAGAAGTTC
TGGAAGAAAAGCACTCGTTTTATTGGGGTACACGACAACAGCTTCTATTC
GGAAAAGTCATTTGTGATTGGCTTGCGACGCAAGATAGAGAAAAAGCACC
GATGGACCCTATATTTGGTACTCTCCTTAACCCGACTGGAGGGTTCCACT
GACAACATCAATGGAAAACCAAAATCGGAGCTTGGCCACTTGCTCAGTGA
ACTTGATAAAGAGGTTCGAAAGGCTTCGAGAATTGAGGAATTAGAAATCA
CTGAATCAATGAAGAATATTTTAAGGAAAATGGCAGAGATCAGAGTTTGC
ATGGCCGATTGTGAAACTGTCGAAGATTGTCATCAAAAGCTGTTGAATGA
TGCCGAACGATTCCAAGCAATTTACCAAAAACGTGGCCATGGGAAGCTGG
ATTTCATTCGATAAAGACCACGAATCAGTTGCAAAAGTCAAGCAATATTG
TGAATCGGTCGTTTTTGTGCAATTCTACGGACAGACGAACGACTTAAAGG
ACGAGTTGGTCCAGGCGATACCGGATTTTTCCACGACTCCCTTTTTGACG
ATATGGGTCCCTTTGCTTACCATTCAGCAGTCCACGACGGCTTTGGTTAC
TTAATAACAAAGCACAAGACTGGACCTGGGTACGCTTACCTCAATAAAGG
TCTTTTTGGTGATTGGAGCCCGTTTGGTGGCCAACTTTATGGCATCAAAT
ATTGGGAGAAAATATGCGAAAAATACCATCCTGATAGAGCAACTTTGGAG
CAATTTATTTTTCTATGAATGAATCAGAAGTTCTGGAAGAAAAGCACTCG
TTTTATTGGGGTACACGACAACAGCTTCTATTCGGAAAAGTCATTTGTGA
TTGGCTTGCGACGCAAGATAGAGAAAAAGCACCGATGGACCCTATATTTG
GTACTCTCCTTAACCCGACTGGAGGGTTCCACTGACAACATCAATGGAAA
ACCAAAATCGGAGCTTGGCCACTTGCTCAGTGAACTTGATAAAGAGGTTC
GAAAGGCTTCGAGAATTGAGGAATTAGAAATCACTGAATCAATGAAGAAT
ATTTTAAGGAAAATGGCAGAGATCAGAGTTTGCATGGCCGATTGTGAAAC
TGTCGAAGATTGTCATCAAAAGCTGTTGAATGATGCCGAACGATTCCAAG
CAATTTACCAAAAACGTGGCCATGGGAAGCTGGATTTCATTCGATAAAGA
CCACGAATCAGTTGCAAAAGTCAAGCAATATTGTGAATCGGTCGTTTTTG
TGCAATTCTACGGACAGACGAACGACTTAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006558XLOC_006558Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011688-exon-sc0000131-1575043694:493137..493469TCONS_00011688-exon-sc0000131-1575043694:493137..493469Clytia hemisphaericaexon
TCONS_00011688-exon-sc0000131-1575043694:492521..492767TCONS_00011688-exon-sc0000131-1575043694:492521..492767Clytia hemisphaericaexon
TCONS_00011688-exon-sc0000131-1575043694:492158..492313TCONS_00011688-exon-sc0000131-1575043694:492158..492313Clytia hemisphaericaexon
TCONS_00011688-exon-sc0000131-1575043694:491520..491999TCONS_00011688-exon-sc0000131-1575043694:491520..491999Clytia hemisphaericaexon
TCONS_00011688-exon-sc0000131-1510915933:493137..493469TCONS_00011688-exon-sc0000131-1510915933:493137..493469Clytia hemisphaericaexon
TCONS_00011688-exon-sc0000131-1510915933:492521..492767TCONS_00011688-exon-sc0000131-1510915933:492521..492767Clytia hemisphaericaexon
TCONS_00011688-exon-sc0000131-1510915933:492158..492313TCONS_00011688-exon-sc0000131-1510915933:492158..492313Clytia hemisphaericaexon
TCONS_00011688-exon-sc0000131-1510915933:491520..491999TCONS_00011688-exon-sc0000131-1510915933:491520..491999Clytia hemisphaericaexon
TCONS_00011688-exon-sc0000131-1491911889:493137..493469TCONS_00011688-exon-sc0000131-1491911889:493137..493469Clytia hemisphaericaexon
TCONS_00011688-exon-sc0000131-1491911889:492521..492767TCONS_00011688-exon-sc0000131-1491911889:492521..492767Clytia hemisphaericaexon
TCONS_00011688-exon-sc0000131-1491911889:492158..492313TCONS_00011688-exon-sc0000131-1491911889:492158..492313Clytia hemisphaericaexon
TCONS_00011688-exon-sc0000131-1491911889:491520..491999TCONS_00011688-exon-sc0000131-1491911889:491520..491999Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011688-proteinTCONS_00011688-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000131supercontigsc0000131:491520..493469 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.100386	0.265482	0.547393	0.616264	0	0.0375439	0.0905903	0.155108	0.140356	1.13765	0.0713877	0.329402	110.71	97.9723	150.212	43.3418	62.1276	243.386	95.0384	127.069	1.30314	1.28844	26.6829	12.6396	14.1214	3.88187	344.626	263.937	34.5466	31.1913
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00011688 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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