TCONS_00011673 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011673
Unique NameTCONS_00011673
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length944

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011673 ID=TCONS_00011673|Name=TCONS_00011673|organism=Clytia hemisphaerica|type=transcript|length=944bp
ggacATCAATGATGATGATTGGTGCATTTGAGATGATGCTGGTGACGAAG
AGAAGCTTTCAGTTTGTTCTGGTAAAGAACTTGACGGTGATGAAAACATC
TCTGGCGAGGATGATGAGAACATTTCTGATGCTTCTGGTAagattgaaga
tgaagatgaaattaTTTCAGATTCTCCCGGTAGAGCTGTTGAATAAGAAT
CTACCATTGATGAGAAGCTTTCTAGTTGCTGGTAGCTCGAGCTGACTGAT
GACATTGGTGGTTCAAGAAGGGTCGAAACACTGCTGGAGACGAAAACTGA
TGACGACTCTTGTTGATGGTCGATGGATGTAAAGAATAGAGATTCTGATT
GTTCTATGGACATTGTTGAGCTTGTGATTGATTGCATTTTAGACAGATTT
GGTGTTTCAATATCAAGATTACTCGACGCCTGGCTGACAGAGGATGTTAT
GCTTGACGACTTTTCAAGTACACTAATGCTTGCTATCATACCTATGGATT
GACTTGGGGATGCCAGCAGTGAAGATACTGACATTTCATTGTCCACACTA
CTGCTTGTGCTTGGTGTTGAAGCCAGATTAACAATCGAATTGTCAACATA
GTTACTTGTCGAAGCCTCTACAGAATTCTCAATAGAAGTTTGTATAGCAC
TGTGAAGTCCTTGTGTTGGTGAAACATTACCAGTCTGTGTGGGAGTTATT
GACTCCTTGATATCTGAGATGCTCACACTTGACGACCCCTCGTCCTGGGA
TACTGAAGTTTGTTGGACAACTAATGATAATGAACCATAACTTGAAGACT
TGGCAAGAAAAGAGCTTTGAACTTGAACAAATTCGCTTGGGGAGACAGTC
GCTACGTAAGATGACGGTTGAAATTCTTGCAGAGCTTCAGATTGATCTTC
TGTTTCTTCATTTTCGTTTGGTTCTTCCCCACCTTCACATTTTG
Run BLAST on NCBI

transcript from alignment at sc0000131:267026..268237-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011673 ID=TCONS_00011673|Name=TCONS_00011673|organism=Clytia hemisphaerica|type=transcript|length=1212bp|location=Sequence derived from alignment at sc0000131:267026..268237- (Clytia hemisphaerica)
GGACATCAATGATGATGATTGGTGCATTTGAGATGATGCTGGTGACGAAG
AGAAGCTTTCAGTTTGTTCTGGTAAAGAACTTGACGGTGATGAAAACATC
TCTGGCGAGGATGATGAGAACATTTCTGATGCTTCTGGTAAGATTGAAGA
TGAAGATGAAATTATTTCAGATTCTCCCGGTAGAGCTGTTGAATAAGAAT
CTACCATTGATGAGAAGCTTTCTAGTTGCTGGTAGCTCGAGCTGACTGAT
GACATTGGTGGTTCAAGAAGGGTCGAAACACTGCTGGAGACGAAAACTGA
TGACGACTCTTGTTGATGGTCGATGGATGTAAAGAATAGAGATTCTGATT
GTTCTATGGACATTGTTGAGCTTGTGATTGATTGCATTTTAGACAGATTT
GGTGTTTCAATATCAAGATTACTCGACGCCTGGCTGACAGAGGATGTTAT
GCTTGACGACTTTTCAAGTACACTAATGCTTGCTATCATACCTATGGATT
GACTTGGGGATGCCAGCAGTGAAGATACTGACATTTCATTGTCCACACTA
CTGCTTGTGCTTGGTGTTGAAGCCAGATTAACAATCGAATTGTCAACATA
AGTACTTGTCGAAGCCTCTACAGAATTCTCAATAGAAGTTTGTATAGCAC
TGTTAAGTCCTTGTGTTGGTGAAACATTACCAGTCTGTGTGGGAGTTGTT
GACTCCTTGATATCTGAGATGCNAATTTTCAAGTGCACTAATGCTTGCTA
TCATACCTATGGATTGACTTGGGGATGCCAGCAGTGAAGATACTGACATT
TCATTGTCCACACTACTGCTTGCCAAAGCTGGTGTTGAAGCCAGATTAAC
AATGGAACTGTCAACATAGTTACTTGTCGAAGCCTCTACAGAATTCTCAA
TAGAAGTTTGTATAGCACTGTGAAGTCCTTGTGTTGGTGAAACATTACCA
GTCTGTGTGGGAGTTATTGACTCCTTGATATCTGAGATGCTCACACTTGA
CGACCCCTCGTCCTGGGATACTGAAGTTTGTTGGACAACTAATGATAATG
AACCATAACTTGAAGACTTGGCAAGAAAAGAGCTTTGAACTTGAACAAAT
TCGCTTGGGGAGACAGTCGCTACGTAAGATGACGGTTGAAATTCTTGCAG
AGCTTCAGATTGATCTTCTGTTTCTTCATTTTCGTTTGGTTCTTCCCCAC
CTTCACATTTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006551XLOC_006551Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011673-exon-sc0000131-1575043694:267641..268237TCONS_00011673-exon-sc0000131-1575043694:267641..268237Clytia hemisphaericaexon
TCONS_00011673-exon-sc0000131-1575043694:267026..267372TCONS_00011673-exon-sc0000131-1575043694:267026..267372Clytia hemisphaericaexon
TCONS_00011673-exon-sc0000131-1510915933:267641..268237TCONS_00011673-exon-sc0000131-1510915933:267641..268237Clytia hemisphaericaexon
TCONS_00011673-exon-sc0000131-1510915933:267026..267372TCONS_00011673-exon-sc0000131-1510915933:267026..267372Clytia hemisphaericaexon
TCONS_00011673-exon-sc0000131-1491911889:267641..268237TCONS_00011673-exon-sc0000131-1491911889:267641..268237Clytia hemisphaericaexon
TCONS_00011673-exon-sc0000131-1491911889:267026..267372TCONS_00011673-exon-sc0000131-1491911889:267026..267372Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000131supercontigsc0000131:267026..268237 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.118646	0.0888707	0	0	0	0.10159	0.434562	0	0.13042	0	0.123605	0.152603	1.19116	0.741718	0.737126	1.00551	0.79154	1.07854	0.6906	1.97165	0.689542	0.851817	0	0.221151	1.81569	1.91384	0.167768	0	2.18105	1.49775
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00011673 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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