TCONS_00011654 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011654
Unique NameTCONS_00011654
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2682

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011654 ID=TCONS_00011654|Name=TCONS_00011654|organism=Clytia hemisphaerica|type=transcript|length=2682bp
CTACTACTAACTAAAATAACTCAACTAATAAAATGTGAAAATGCCTGATG
CAAGAAAATGGTCAATCATGTACTTTCTTCACTGGTGACAAAATGGAAAT
GAGTTGGTCCATCAAAATGTGAAGGTGGGGAAGAACCAAACGAAAATGAA
GAAACAGAAGATCAATCTGAAGCTCTGCAAGAATTTCAACCGTCATCTTA
CGTAGCGACTGTCTCCCCAAGCGAATTTGTTCAAGTTCAAAGCTCTTTTC
TTGCCAAGTCTTCAAGTTATGGTTCATTATCATTAGTTGTCCAACAAACT
TCAGTATCCCAGGACGAGGGGTCGTCAAGTGTGAGCATCTCAGATATCAA
GGAGTCAATAACTCCCACACAGACTGGTAATGTTTCACCAACACAAGGAC
TTCACAGTGCTATACAAACTTCTATTGAGAATTCTGTAGAGGCTTCGACA
AGTAACTATGTTGACAGTTCCATTGTTAATCTGGCTTCAACACCAGCTTT
GGCAAGCAGTAGTGTGGACAATGAAATGTCAGTATCTTCACTGCTGGCAT
CCCCAAGTCAATCCATAGGTATGATAGCAAGCATTAGTGCACTTGAAAAT
TNGCATCTCAGATATCAAGGAGTCAACAACTCCCACACAGACTGGTAATG
TTTCACCAACACAAGGACTTAACAGTGCTATACAAACTTCTATTGAGAAT
TCTGTAGAGGCTTCGACAAGTACTTATGTTGACAATTCGATTGTTAATCT
GGCTTCAACACCAAGCACAAGCAGTAGTGTGGACAATGAAATGTCAGTAT
CTTCACTGCTGGCATCCCCAAGTCAATCCATAGGTATGATAGCAAGCATT
AGTGTACTTGAAAAGTCGTCAAGCATAACATCCTCTGTCAGCCAGGCGTC
GAGTAATCTTGATATTGAAACACCAAATCTGTCTAAAATGCAATCAATCA
CAAGCTCAACAATGTCCATAGAACAATCAGAATCTCTATTCTTTACATCC
ATCGACCATCAACAAGAGTCGTCATCAGTTTTCGTCTCCAGCAGTGTTTC
GACCCTTCTTGAACCACCAATGTCATCAGTCAGCTCGAGCTACCAGCAAC
TAGAAAGCTTCTCATCAATGGTAGATTCTTATTCAACAGCTCTACCGGGA
GAATCTGAAAtaatttcatcttcatcttcaatctTACCAGAAGCATCAGA
AATGTTCTCATCATCCTCGCCAGAGATGTTTTCATCACCGTCAAGTTCTT
TACCAGAACAAACTGAAAGCTTCTCTTCGTCACCAGCATCATCTCAAATG
CACCAATCATCATCATTGATgtccaaaacattcgaatccttCTCGATGAG
CGATAATCTCCAATCGTTCACCAGCATCATGGAATCATCTTCTGCATCAA
TGTCACCAAGCGAGAATATCTTTGAATCCTNTCATGGAATCATCATCTGC
ATCAATGTCATCAAGCGAGAATATCTTTGAATCCTTTTCAACATCCATTC
TAGATTCTCAGTCATCAATTTCACTGATTGAAAGTCTTTTTGAATCTGTA
TCACCATTGACTCAGAGTATATTTCAATCGTCATCATCTTTTGCGGTCGG
CCAAGAATCATCTGTTTCATCCTCCCTATCTTACAGCAGTTTCCTTACCT
CATCACCGGAGATTTCAACAGAAAGTCTATTTGAAACTCAACCCATCTCC
ACACTAGCAGCATCATCAGATAGTCTATTTGAAACTCAACCCATCTCCAC
ACTAGCAGCATCATCAGAGAGTCTGTTTGAAACTCAATCAATCTCTACAC
TAGCAGCATCATCAGATAGTCTGTTTGAAACTCAATCCATCTCGTCTTCA
CTTATATCATCGATAAAGAGTCTGTTTGAGACACAATTTGTATCCACGAT
TTACCTCTCATCTTCATCAGAAATGGAAGCTTCGTACAGTAGTTCAATGT
CAACACAAGTATTCGTAAGCAGCAGTATCTCATCCTCGATCGATGAAAGC
GTTGCTGTCAGCACAAGTCTCACACCCAGTAGTGCAATGAGTTCTGAGGT
TGTATCGTCAAGTATCTTCATCCTACCTCAAGTACCAAGTGCTTCACCTG
AGAACCTTACTGCTATCGTACGCTCATCAACACAAATCGATCTCTCATGG
GACGAACCACCTTTCGAATCACAAAACGGACAAATCATTTCATACAATAT
TCAAGTTATACGTGATAATCAAACAGAAAAATCCTTGAATACTACAGAAC
AGTTTTATGACGTGACCAATCTGAGAAAGTTCACCAATTATACTTTCTTG
GTGAGTGCGTCCAATGAAATTGGAGAAGGTCCGTCAGCCATGGCGACCAA
ACAAACATTACCAGATTTCCCAGAATCTGCACCTACCAACCTCACTGCAA
AAGCACTTTCATCCACCGCTATTCAAGTCTCGTGGGATCCCATCCCAACA
TTACTTCAAAACGGAATCATCCATATCTACAAAGTTGAAGTCCGAATCGG
GGACTCATTCGTTGAGAGTTTCAACGCTACTGACACAGACATGTATACTA
TAATAAATCTGAAAGCATTTACTAACTACACCTTTGTTGTCAGTGCTTTC
AATCAAATTGGAGAGTCTCCAAAAGCAAGTGTCAGTGAACATACTTTGGC
GGATTGTAAGTTTATTCTTTGGTGCGAACCAG
Run BLAST on NCBI

transcript from alignment at sc0000131:262467..271474+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011654 ID=TCONS_00011654|Name=TCONS_00011654|organism=Clytia hemisphaerica|type=transcript|length=9008bp|location=Sequence derived from alignment at sc0000131:262467..271474+ (Clytia hemisphaerica)
CTACTACTAACTAAAATAACTCAACTAATAAAATGTGAAAATGCCTGATG
CAAGAAAATGGTCAATCATGTACTTTCTTCACTGGTGACAAAATGGAAAT
GAGGTAAatgttatttattttatattggGATGTTCCATTAAAAATCTATA
CAATTGGACGGACAAAGCTTTTCACGTCAATTTTGAATTGGGCTCAATGT
CAGAGGTATATTTATAGCAAAAGAAAAgacttttgacgtcaaatctgaGC
TTTTTGTGTGACGTAGATTTATGAGGCGTCTTAAAATGATCTGGAAACAA
TTGACGTGTAAAAACAAACTTCGAACCCTATCAAGCTTCTTGCCTTAAAT
CCTGTTTGCAGTTTGAATTCAGAATTAGTTTATTGGAACAAAAGCTATCA
AGCttttaaagttaaaattatTCGCTTTTGAGAAATCTCAAGAATATGTC
ATTAAGGGGTTATCAAATTGAATATAAACTTacttttttcaatgaaagtt
tttttgagaaattgcgCAAGTCTACTtggtttttgtcatttttcatctGA
AAACATAAGTTGATTTGTGCACAGGTTCGCGTTCTCATttaacttttaac
ttttaaccatttttgaaccaaaatttgaagttttagcCTTTCCACTTTCT
ATCTTTCTAGAACTTTAGAAGTGGTTGTTTATAATAGTTCCTTCTAAAAA
CTGGTAATCCAATACCAAAAAGCTCTGCGATGGTGTTTATGTAATCTTGT
TACTCAATCTGGGTCACACGTCCACCATCGTTGAGGCTTTTTTCcacaaa
caaaattttgaattttattaatcCTAAGTATTTTGATGAGTCACGagtta
cttataaaaaaaatttgacaactTTTCTATGAGTTTTTTGATACCTTTTT
GCATAACTAGAAGGAAACATATACTTTTGCGACTTTTTGTCACTTTCTAT
AAAAacaggaaacatagcagaactGTTGGTTTTTTGTGTTATAAGATTTA
GGAGTCAACGAAAGTACAAAACTTTTCTGAGAAGCAATTTTTGACAGTTT
AACCTTTagacaccgctgtttttaaaaacagtgcgcgctgctgccgctgt
ttttttcatgaaaatggaggtttcgcggaaaatgtcataaaatctgaacN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtattaaactttgaaagga
ccccagtatcaaaacgtacgtggtacgtctctcggcctgtatatatgacg
tacgtggtacgtctctcggcgtcTAAAGGTTAAGAGTATTTAAAGGTCAT
TGATAGACAAAATGAAGTGACAATAAATTCACTGTTGAATTCGCGTTTCA
AAGATTTCTCCAACATATAAAAAGACTCAGATTTAAGACAAAAGCACGTG
ACAATACAAACCCTTTTTAAAATGTGAAGCCCTTAAAACACGTTTGCAAG
GATTAAATCTTATCACTTTCTATCATCAATCATTACACCTTTTGatccaa
aaatcttattccCAATCTCAAGTTCTTATTTTTGTAAGAACTGCACTGGT
AAATTTTGGTACTTTCCAGACCTTACTTGTTGGTTTCTGTAATCAATCTC
AACATTTCTTAGAATCCACCATGCGTTAAATTATTgttaattttcagatt
ttaatgcAAAATCGCTCTTAACGCCTGATTGACAATGTACGATTCTTTCT
CGGAAAAGCTCTATTAAGTACTTCGACCATGTCTCAGTGCCCTCAGAGCT
TTTTCCCACAGTGGAGATGAAAAGTTTTATGGAGATCCCaacggggatag
aaattctattcttccaaactcaaaaaattatgcGAGGATGGTTTTGGACG
GATTTTTTCATTAAGTCAATATcccagtgggactgaaattgtaGAGCAGT
GATACGTCAGGTAATTCTTCCAATCAGTAACAAGGAGTCAAAATGAAACC
TTTCATCTATGAAAAAGTCGCTAAATATAATCTAACTTTCCATACAGAAC
CTCAAATTTAATTTCCAAATGGATGATCACGTGATAAACCACAACCTAAT
GACGTCATAACAGACTCACTTTAAAGTAGGCTGTTTAAACTAGTAAGTGT
AAGTGTTTGCATTAGTTCAACATCCTTAAGAGAAGAGCCCTGAAATActa
attttattcaatttaccatcttcaatatttttctttgacAATGATAAGGA
tcggaaaattagaaaaattagatttgaaaacttttatcaaataaaGGAAA
GGAATGCTTGATTTTTGGAGATAAATTGCTGACTCAGTGTTTTAAGGTTA
AGTTTAAGATTTCCTAGAACctcttttcatattttttaatagTCATGTAT
TACTTTATCAAATAGATATTAAAAAGAGGGATTAAGACTTTAGCTGAAAG
TTACCCCTTTTCCCTGTTTGTTTTAAAccaaaacgaataattagaaaaTG
GTCATATTATTGTTCTCTTGTCGTTCATGTTGATTTTGAAGTTTTCATCA
GAAGTGTACACAAAAACAAAGATCTTggcattttttacttttatttactt
CTATGGCTGATCAAATTTATGTTATCTGAGacctttattttttacataag
aAAACAAGTGATAACAAGACTTCTGCGGTCATAATGAATTTTATTGATTG
AAGTATGGAAACTACCTGAAAGTCTTCATGATAAAGAATCTTACACCGGG
TTTTCTGTTATTGTTCTACAGTTATCTTCCTTTATCAATGATGACAAAGG
GTTTAAAACTCATTACTTCCTCAATCTATAAAAActactttcttataaaa
agtggaATAATATTTCATGTGCAATCATGACACTGTTATAATATCACTTC
ATATAAGACACAAATTTGTTTAGTCTTTCGAAAAATAACATACAGTGCGT
GGTATCTTCATTAGAAAGCATTTTTTTCATATgatatttcactttttctt
aATAACTGGAGGgtggaatttattttttttcggcTGAAAATTTGTATTTA
ACAATAAGAAACAGGCATTTTTAAGCCTGGCCAACTTTTAATAACCATGC
TGGCATGGAAGTCTTTGGTTTCAGTTTTTGTAATTTGTATCTTAATCAGT
AagtatttatgatttttttaaccttttgcCCCTCCTTGTTTGCTCCTTTG
TGACTCATATTTTGATCGGGGAGGATGTCAAGATTATTGAGttagaattt
attttgaattataaGTAACGGTTCTGTTCTcgtttactttcacttttgat
ttttttatctaaTGATTAGTATGATTGGTTAGCCTTATATTCAGGTAGTT
CTCAAAAGCTTTTATGGCGGGGTTGATATTTTAACTGGCctagatatttt
ttttcatcccTTGACTTTCACGTTTGACACTCTTGCGTTTGTAGTTCATC
TTAGGCaagattagttgttttacgggcccaaCCGACCCTGACATtccaaa
aatcatgattttggttgtacatttttattttcattgctttacagactgcc
aaattttcaaaattttggtagttcttccaaggttttgagaatttttcatt
ttatccatgactgacctttttgtgtctttttaggagattttaaaggtgaa
attttacttttattttaattttttcgccgaccgaccctttttttgggtag
ctttGCCCGTAAAACAACGAATgaaattggcctcgcctaatAAATAAGGC
AGGGAAAATTGAGTTAAATTTGAGTTGTATTTCGATATCGTTTAATTTAG
TTGGTCCATCAAAATGTGAAGGTGGGGAAGAACCAAACGAAAATGAAGAA
ACAGAAGATCAATCTGAAGCTCTGCAAGAATTTCAACCGTCATCTTACGT
AGCGACTGTCTCCCCAAGCGAATTTGTTCAAGTTCAAAGCTCTTTTCTTG
CCAAGTCTTCAAGTTATGGTTCATTATCATTAGTTGTCCAACAAACTTCA
GTATCCCAGGACGAGGGGTCGTCAAGTGTGAGCATCTCAGATATCAAGGA
GTCAATAACTCCCACACAGACTGGTAATGTTTCACCAACACAAGGACTTC
ACAGTGCTATACAAACTTCTATTGAGAATTCTGTAGAGGCTTCGACAAGT
AACTATGTTGACAGTTCCATTGTTAATCTGGCTTCAACACCAGCTTTGGC
AAGCAGTAGTGTGGACAATGAAATGTCAGTATCTTCACTGCTGGCATCCC
CAAGTCAATCCATAGGTATGATAGCAAGCATTAGTGCACTTGAAAATTNG
CATCTCAGATATCAAGGAGTCAACAACTCCCACACAGACTGGTAATGTTT
CACCAACACAAGGACTTAACAGTGCTATACAAACTTCTATTGAGAATTCT
GTAGAGGCTTCGACAAGTACTTATGTTGACAATTCGATTGTTAATCTGGC
TTCAACACCAAGCACAAGCAGTAGTGTGGACAATGAAATGTCAGTATCTT
CACTGCTGGCATCCCCAAGTCAATCCATAGGTATGATAGCAAGCATTAGT
GTACTTGAAAAGTCGTCAAGCATAACATCCTCTGTCAGCCAGGCGTCGAG
TAATCTTGATATTGAAACACCAAATCTGTCTAAAATGCAATCAATCACAA
GCTCAACAATGTCCATAGAACAATCAGAATCTCTATTCTTTACATCCATC
GACCATCAACAAGAGTCGTCATCAGTTTTCGTCTCCAGCAGTGTTTCGAC
CCTTCTTGAACCACCAATGTCATCAGTCAGCTCGAGCTACCAGCAACTAG
AAAGCTTCTCATCAATGGTAGATTCTTATTCAACAGCTCTACCGGGAGAA
TCTGAAAtaatttcatcttcatcttcaatctTACCAGAAGCATCAGAAAT
GTTCTCATCATCCTCGCCAGAGATGTTTTCATCACCGTCAAGTTCTTTAC
CAGAACAAACTGAAAGCTTCTCTTCGTCACCAGCATCATCTCAAATGCAC
CAATCATCATCATTGATgtccaaaacattcgaatccttCTCGATGAGCGA
TAATCTCCAATCGTTCACCAGCATCATGGAATCATCTTCTGCATCAATGT
CACCAAGCGAGAATATCTTTGAATCCTNTCATGGAATCATCATCTGCATC
AATGTCATCAAGCGAGAATATCTTTGAATCCTTTTCAACATCCATTCTAG
ATTCTCAGTCATCAATTTCACTGATTGAAAGTCTTTTTGAATCTGTATCA
CCATTGACTCAGAGTATATTTCAATCGTCATCATCTTTTGCGGTCGGCCA
AGAATCATCTGTTTCATCCTCCCTATCTTACAGCAGTTTCCTTACCTCAT
CACCGGAGATTTCAACAGAAAGTCTATTTGAAACTCAACCCATCTCCACA
CTAGCAGCATCATCAGATAGTCTATTTGAAACTCAACCCATCTCCACACT
AGCAGCATCATCAGAGAGTCTGTTTGAAACTCAATCAATCTCTACACTAG
CAGCATCATCAGATAGTCTGTTTGAAACTCAATCCATCTCGTCTTCACTT
ATATCATCGATAAAGAGTCTGTTTGAGACACAATTTGTATCCACGATTTA
CCTCTCATCTTCATCAGGTAAAAGACTCTTTTTTTGTACCAAAGTTTCTT
AAAAAGCTACCTTAATTAATGCATTTGTTAATACTGAATAACAAAAgcca
aaatgcattaaaaactTCAGTCTGATTTTTCCCGATTCCATTTTAGGCTA
CTTGTGTATTCCGTATTCTTAAGCTCTTTACTTCGTTAAATTCggtctca
ttttttatttcctttctTTGTCTTTAGAAATGGAAGCTTCGTACAGTAGT
TCAATGTCAACACAAGTATTCGTAAGCAGCAGTATCTCATCCTCGATCGA
TGAAAGCGTTGGTAAGTATTCGAAATCTTGATTATTAAACACTGATCACA
GACCCATAGATACCTTTTACCTACGGGAAGACATGACCAAAACCTTTCAC
CATAATGGAATTACCCTGAAACTTCATCCCGATCGAAAAAAACACCTACT
TTCATTTGTGTAGGGAAACGTGAATTGTTTGGTAGTTTAAACTTCATTTT
GGgctgtaaacaaaaaaaaacaacaaataattTCCCCACCCCTGTTTACA
TAAGTATAACTATTCTTCATCTTATTTCATTGGCTTCCACCGGGTAAAAA
GCCGGGTGTGTTCGTCAATGTTGGTTGGATGAAtgacagtagcgtagaca
agaggggcgcaaaatttgtgtaggagagcagatttttatgtcacagtaat
tatctattcatgatgtaaaaagataattaccgtGTCATAAGAATCTGCTC
TCCTGCACAAATTTTGCGCACCTCCTGTCTACACTACTGAATGAAACATT
ACATTCTGCTTTTTCACCATTGTAATTGTTCTGGTCAATTCTTTCTTCAG
CTGTCAGCACAAGTCTCACACCCAGTAGTGCAATGAGTTGTAAGCATATT
TTCTTCTCATTTTTATATTGAGTTAATATCTTCACTTACTTAATTCATCG
CTCAAGGCTCCAAGAATAAGCTGTTAGTCAAGGGGGAGGTATTATACAGT
AATCTATTTACTTTCTTGCAATTTCAGCTGAGGTTGTATCGTCAAGTATC
TTCATCCTACCTCAAGGTATTACTTTTTTAAACGTGAAATTCTTTGATTG
ATTCTAACGATTTGTTTTGCGATTGCGAtgtgtttttttaattaatcAAA
ATCTCTACAGGAGAAAAGATATCTTAGCCCCCATCCCCACTGCTATTTTT
CCAGCAGTGAAACAAGGGCAATCATTTTCTTCTTGCCGTTCTTAACCTTT
TAAATCAACGATTGAtttatctttaattttgaataagGCGTTTCCTTGTG
CCCTTATTATTAGCGACTTTATGAGACAAATCGAAGGaaacggtataaag
caaagcctCCACAATCGCTGTCCACTTTgatcgacgacggtaaaaacacc
aaaataccttTGTTTGTTTAGGCAAGCAAAGACGATATAGCCTTATATCA
ACTATCGACTTCGTTTTGCGTCGACTTTGCTTACCGTCGTCCTTGATATC
CTCCTATATATAAATTCGCTATTATGCCCTTATTATTATAGTCGAATTAC
TATCCATTTCTAGTACCAAGTGCTTCACCTGAGAACCTTACTGCTATCGT
ACGCTCATCAACACAAATCGATCTCTCATGGGACGAACCACCTTTCGAAT
CACAAAACGGACAAATCATTTCATACAATATTCAAGTTATACGTGATAAT
CAAACAGAAAAATCCTTGAATACTACAGAACAGTTTTATGACGTGACCAA
TCTGAGAAAGTTCACCAATTATACTTTCTTGGTGAGTGCGTCCAATGAAA
TTGGAGAAGGTCCGTCAGCCATGGCGACCAAACAAACATTACCAGATTGT
AAGTTatattttaattatatttttatttgaactCTCGATAACTGGAAACA
TACTTGGCTTATGCTGGGAACCAATCTTCTAACCGTAATTGGCTTGAGAA
CTGTTGTCCAACTGTTAGAAAAAACATGGAACTGGATGGGCTATTCTAGT
GTCATACATTTTTTTCATCGATGCTTTTAAATATAAGCCTTTTCTTGCAC
CCTCACGTCTATGAAAGTTTAAATCACCTATAAACAACCCTTGaagaata
aaataataaatctgTTTCCGAATAAACCATTCGGAAAAAGCACGTTAATC
AGTTTAACTTCACTTCAGCAAGTCTTCATCTTTTTAGCGAAATTCTTTCT
CTCGAAAAAGTGTTTAccaatttaaaatcaaataacGAATTCAAACGAAA
TTAAATATTGAGTAAtattttttggttaaaattcgTTATTCTTTCACACT
TTGCATTACACTTACAATCACTATTCACTTGCACTTCACACAGTCCCAGA
ATCTGCACCTACCAACCTCACTGCAAAAGCACTTTCATCCACCGCTATTC
AAGTCTCGTGGGATCCCATCCCAACATTACTTCAAAACGGAATCATCCAT
ATCTACAAAGTTGAAGTCCGAATCGGGGACTCATTCGTTGAGAGTTTCAA
CGCTACTGACACAGACATGTATACTATAATAAATCTGAAAGCATTTACTA
ACTACACCTTTGTTGTCAGTGCTTTCAATCAAATTGGAGAGTCTCCAAAA
GCAAGTGTCAGTGAACATACTTTGGCGGATTGTAAGTTTATTCTTTGGTG
CGAACCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006539XLOC_006539Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011654-exon-sc0000131-1491911889:262467..262569TCONS_00011654-exon-sc0000131-1491911889:262467..262569Clytia hemisphaericaexon
TCONS_00011654-exon-sc0000131-1510915933:262467..262569TCONS_00011654-exon-sc0000131-1510915933:262467..262569Clytia hemisphaericaexon
TCONS_00011654-exon-sc0000131-1575043694:262467..262569TCONS_00011654-exon-sc0000131-1575043694:262467..262569Clytia hemisphaericaexon
TCONS_00011654-exon-sc0000131-1491911889:267017..268833TCONS_00011654-exon-sc0000131-1491911889:267017..268833Clytia hemisphaericaexon
TCONS_00011654-exon-sc0000131-1510915933:267017..268833TCONS_00011654-exon-sc0000131-1510915933:267017..268833Clytia hemisphaericaexon
TCONS_00011654-exon-sc0000131-1575043694:267017..268833TCONS_00011654-exon-sc0000131-1575043694:267017..268833Clytia hemisphaericaexon
TCONS_00011654-exon-sc0000131-1491911889:269044..269127TCONS_00011654-exon-sc0000131-1491911889:269044..269127Clytia hemisphaericaexon
TCONS_00011654-exon-sc0000131-1510915933:269044..269127TCONS_00011654-exon-sc0000131-1510915933:269044..269127Clytia hemisphaericaexon
TCONS_00011654-exon-sc0000131-1575043694:269044..269127TCONS_00011654-exon-sc0000131-1575043694:269044..269127Clytia hemisphaericaexon
TCONS_00011654-exon-sc0000131-1491911889:269667..269705TCONS_00011654-exon-sc0000131-1491911889:269667..269705Clytia hemisphaericaexon
TCONS_00011654-exon-sc0000131-1510915933:269667..269705TCONS_00011654-exon-sc0000131-1510915933:269667..269705Clytia hemisphaericaexon
TCONS_00011654-exon-sc0000131-1575043694:269667..269705TCONS_00011654-exon-sc0000131-1575043694:269667..269705Clytia hemisphaericaexon
TCONS_00011654-exon-sc0000131-1491911889:269844..269882TCONS_00011654-exon-sc0000131-1491911889:269844..269882Clytia hemisphaericaexon
TCONS_00011654-exon-sc0000131-1510915933:269844..269882TCONS_00011654-exon-sc0000131-1510915933:269844..269882Clytia hemisphaericaexon
TCONS_00011654-exon-sc0000131-1575043694:269844..269882TCONS_00011654-exon-sc0000131-1575043694:269844..269882Clytia hemisphaericaexon
TCONS_00011654-exon-sc0000131-1491911889:270380..270664TCONS_00011654-exon-sc0000131-1491911889:270380..270664Clytia hemisphaericaexon
TCONS_00011654-exon-sc0000131-1510915933:270380..270664TCONS_00011654-exon-sc0000131-1510915933:270380..270664Clytia hemisphaericaexon
TCONS_00011654-exon-sc0000131-1575043694:270380..270664TCONS_00011654-exon-sc0000131-1575043694:270380..270664Clytia hemisphaericaexon
TCONS_00011654-exon-sc0000131-1491911889:271160..271474TCONS_00011654-exon-sc0000131-1491911889:271160..271474Clytia hemisphaericaexon
TCONS_00011654-exon-sc0000131-1510915933:271160..271474TCONS_00011654-exon-sc0000131-1510915933:271160..271474Clytia hemisphaericaexon
TCONS_00011654-exon-sc0000131-1575043694:271160..271474TCONS_00011654-exon-sc0000131-1575043694:271160..271474Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000131supercontigsc0000131:262467..271474 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0238308	0.0879609	0.0234002	0.0620947	0.267038	0.108393	0.415912	0.592815	0.380239	0.561074	0.782218	0.343424	1.64505	1.56341	1.95854	2.08631	2.0853	1.63509	3.00876	2.54079	1.45455	0.954672	0.245716	0.663808	2.99853	4.09351	0.431014	0.438632	3.51161	2.81465
Blast
[Close]
BLAST of TCONS_00011654 vs. Swiss-Prot (Human)
Match: SDK2 (Protein sidekick-2 OS=Homo sapiens GN=SDK2 PE=1 SV=3)

HSP 1 Score: 82.8037 bits (203), Expect = 7.174e-16
Identity = 49/146 (33.56%), Postives = 80/146 (54.79%), Query Frame = 3 
Query: 2064 IFILPQVPSASPENLTAIVRSSTQIDLSWDEPPFESQNGQIISYNI---QVIRDNQTE--KSLNTTEQFYDVTNLRKFTNYTFLVSASNEIGEGPSAMATKQTLPDFPESAPTNLTAKALSSTAIQVSWDPIPTLLQNGIIHIYKV 2486
            +F+   VP+A+P N+     ++TQ+D++W+ PP +SQNG I  Y I   +  R N TE  K+L   E    + NL  +T Y   V+A N  G+GP +  T+        SAP+++    L++T++ VSW+       NGI+  Y++
Sbjct: 1616 VFVGEAVPTAAPRNVVVHGATATQLDVTWEPPPLDSQNGDIQGYKIYFWEAQRGNLTERVKTLFLAENSVKLKNLTGYTAYMVSVAAFNAAGDGPRSTPTQGQTQQAAPSAPSSVKFSELTTTSVNVSWE--APQFPNGILEGYRL 1759
The following BLAST results are available for this feature:
BLAST of TCONS_00011654 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SDK27.174e-1633.56Protein sidekick-2 OS=Homo sapiens GN=SDK2 PE=1 SV... [more]
back to top