|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011638 ID=TCONS_00011638|Name=TCONS_00011638|organism=Clytia hemisphaerica|type=transcript|length=164bp
AGGAATAGGTGGAACTTACGTCGTTTCCAGATATTTACCCGCTGGCAAcA
CACAAGGCCAGTACACACAACATGTTCATGGGTTAAGCGCGAAAAAAGAT
CAACACGACCAACCTGCTgttaaagaaaaagttttgtGAGCGAGCGACTA
ACACTGGTTCCTTG Run BLAST on NCBI transcript from alignment at sc0000131:136445..142927+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00011638 ID=TCONS_00011638|Name=TCONS_00011638|organism=Clytia hemisphaerica|type=transcript|length=6483bp|location=Sequence derived from alignment at sc0000131:136445..142927+ (Clytia hemisphaerica)
AGGAATAGGTGGAACTTACGTCGTTTCCAGATATTTACCCGCTGGCAAca
tcacagatttctgtaaagcccgaagggctagatgtctagatgtttccaag
aaaaaaaaagtgaatgttgcaaaaaatattgctgctattgttttcgaaaa
cacGCGAAACTTCTTATTgttcaagcgctgaaattctattgtaatttcAC
TTGACCTAGGTAAGATTACTTACCTAACCtgggcacacttttcagcaaaa
gcttgacatctagccctttgggctttataaatctatgctcCCAATACCCT
ATTTCAATTTTGCATgcatttatttttatattttgcttCCTTTTCACTTG
TTTTATTTGTTTACTCCATAGTTATTTTGAAAGATCCGCTTTCATGGAAA
AGACAAAAACTTTTTAGCCTTGACGTAAATTATATACTTCCTACTGTGTT
TGACAGTGACGTTTATAAAGGAGCTAGACGCGGATCAGTGTTGGATAAGG
GAGGAGAGGAGAGAGAGAGGAGATAAGATTTACAAATAGCAGAGTACTGT
AGTGGATAAAAAGATTTATTTGGAATACGAAACATTGTAACCACGGCAGT
CCAAAGAAGTTTTCCCGCGACCAGGCAAACAATTATCTGTAGGCCACGCC
TTTCTACTGTGTCTAGTGGTGTTTTAAAGTAGTTTTTTAAAGCTCAAGCT
GATATAAAAAGTATGTTATTAGTTTATCGTTTTTATTGGAtgaattttta
tattaaaaaaaaacaggtaTCATATTTTTAATTAGTATATCTCAGTTAAA
CGAATTGTTCAAGTGAGACAAAAGAAAGGTAGCATGATTTAGCAGCACCG
CTGAGCCACCTCAAACATTTACACGTCACGTATTTGAACGCAAAGGTGGA
GAGCTGCTTTGAACCTTATCCATTTACCTTATAAGGAAAGAATTATCTTC
CACTATAAGAGATTTTAACCATCTGTATCCACGATTACCTTTCACCGAGC
GATTAAAGTAATATATTTTGTATTACaatcaaagacattgaaaaGGGTGT
GGTATGTCTTCATCTGGTTCTATAGAACGTGTCAAGAAAGAGAGTATAAA
AGGAAGTGGTACAGAGGAAGTAGAGTGTCTTTCTAAGCTGAGTTTTTAGT
AAAGAGGAGAAGGGAAGAAGTCAAGATGAAGCTTTTTCTTATCTTAGTCA
TTGCAATTGCTACAGTCACTCAAGGTGAGTTTTCTTATGTCATTTTGCAA
TTTCATCGAAACTTTAACTTTTTGAAGCTTCTTTGACCCGAATTTTCCGT
GTAACCTGGTTATTGTTTTGGTTAGGATTTTTGCATGAAATTGCCTCCTA
TTTCGTTGATTTCTGTGTCACTACTAAAGGTTTaaatgtaaccaacaaaa
ctatggtattttaaacattttctgttaggccaactcttcctgaatctgaa
aatttaaaagtcataatgaaaaattttgatggagaagaaaatgaagactt
atgcgaagaattatatttcaacctttgaggaccttattttcggcgaagaa
aaaacatttcgaaaatttttttgcgttaGAAGGTGTGtctttaaccaaac
taaaaagagattttcggaaaattttagTAAAAGCTTCTTTGCCTCAAaat
cgttttttatttgaaaattttcaaatagttcaattctttgcggacaacTT
AAAATATGTTCGAACCAAAAAGGTTAAATGACCaataaaacttagcactt
tttgatGAAGAGGGTAAcataacattttattaacgtctttttaaagttca
taaggacatgtttttttttgactgtaccaaaataCCGATTTTCAATCAAC
CCGGTTCAAATCGGCACTAACAGAGACAGCTGAACCCTTTCTTATCGcta
ttcaaaaataagaaaatatattagtagctctgtccgatactttttgtcca
atcttaatagcttttatggaacttaagatatcgcttgttgaatccggagt
attccaggatgaaaaaaatcatagtctATTTCGGATTTATAAAGTCGGCT
CTATATTTGGCTTTTGTCGTGTCCAATTTATATACGAAACTTATATCAGG
GTGTAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNGGTGTAGCtaaaggattgaattttcacatcgacctcttttttt
tggaaaaaaccggaggaaaatgggatcaaattgatcatttttgaaatcta
ggtgctaatcctaatcgtatatattttcctgacaaGTCTATCTATCGAGG
aggtgatttgagatttttgtttagttgaaAGAAAGGAACGAACTGAAGAA
AAAGGGAATtgttaaaatgagtgaaaaatgattaaaaaagtcgtgatgat
tgttttgatcataactcactccgacctttaaaaaaattactcctcaggct
attttatgattttaggctacctcaggaatgcatagaaacctcctcaggac
cgaataatgagtcatggagtgagatatgatccaaaacactccatgattaa
ttaatcctgaaatactccgaattttgaaatttcaaatagctcattttaaa
gcccttctcaaatttcaatacatatcaaaatcttgggaaaattcatcatg
cgaatgacgaaataattaaaataaagtgattttcacgattttcgaaaacc
taattttggtacagtcaaaaaaaaacatgtccataaCGTCATTATTGTAA
CTAAATTCTtaaagttcttaattactcttgacAGGATGAATAATAAACAA
cttttgtaaaagaaaaatcCCTTAATTTCTTACTATGATCAGAGTCCTTA
AGTGTGCCGAAGTTTACCTGTAAGCCACGTATTGTACGCAAACAAGCCAA
AGTGATTATGATTTGATTTAAGGTTCATTAACTATGAAGaccgaataaaa
aataaacgCGAAAATCGAAGCGTAACTTTCAAAGTTTTCTATTGATTTTT
AAAGGTAAACATGTCAAACGTTCACACCAAGATCACAAAAAGGTCAACAC
ATTACCAAGTAAGTAAAACTTGCCGTTCTTTTACTACTTTTAACGGCTTT
TTCATTTTACACCTTCCAAAGTCatcattctttgaaattttcatgagACG
CATATTTTTGACACTTGAACCCATAATGATATACCCATAATTCTTTGCAA
GGTTATGATGGACCAATGCCCGAAGAAGATGCACAATATGTTGAAGAAAT
GTACCATGATGAATTGAGTGAGtccttttaaatattttgtacaGTAAGAT
TTTCGTTATGCAAAGCAAACCCTAAAAATCCCgtattttcattctttatt
tttatcattaCTAGTATTCCCAAAGAGACATTGTATTTTAAGAAAACGAG
CGGTATTTTTGAGGTATAACAACATTTATACATGTTATATAATCCAAATT
CATTGAAAACTGGCAATTTCCCATTCACATTGCATTTAACATCCTCATTC
TGTCTCAATTAGCAAAAGAGTTGTTACagcaccgggtcactgagacagag
gGATGTTTTTCTACATTCTGAACTACAGCTAACCACTTGGTGTCAAGTCT
ATTCTCTCTCATTTTCTTTGAGCCGATACCAAAATAACGAACGTCTATAT
TTTAGGCTGCAAGGATAAATATTCAAATTGTCCAACTTCTTTGCGTCAAT
ATTGTGAAAGTCACAGTTTTGTGAAGACGGATTGGTGTCGGAAAACATGC
GGTGATTGCTCACCAGACCCAGCTCCTGGTAAGATATAATCGAAATCAAT
ATATCAGTAGTAGAACCTCCCTTTAGACTTTTTATAAATCtccaaaataa
aatttaaccATCATGCTTTGTTGCAAGGCAGTTGTTTTGAGAACATTCGT
TATCGTTAAGACTCAATGTAGACCAGTTAGACTTAGCTACAAAAATGGGA
TAAATATTCAATACTTTTTTTTCATAGCTTATGTGACAGCTGAACCGAAA
ATTTCAAGCTCAGAGATGGAAAGCATCAAAGGTAAGACTTCAAGACTTCC
AAGTTTTGGAAAGCGAATTTCAATCCTGAAAGCTGGTAAAAAATTGAATC
TCGTTTGAGTGGCgataaatgaacaaaaaattataGTAAAGAAGTTACCA
GACATGTTTTATAGCCTGTGATTAAATGTTTGTTAAGCTACAGTTATGTA
TCGTTTTTCTCTTGTTTATCTAAAAGCAACTTGCTTGGCAGCTCACAATG
CAAAACGAGGACtccacagaaacacaccctcaATGACTTATGACATGGAT
CTCGCGAAACGTGCTCAAACCTACGCAGAATATCTCCTGGAATTCGACGA
GTGGAAACACGATGCTTTTCGAACATACAATGGCTACGAATCTGGAGTCG
GTGAAAATCTTTACTGGTCATCTTCAGCAAGTCGAACCTCTACTAATGCT
GTTGTCTCATGgtaagaaaataacaaaaaatatctCAGTCAAGGTTTTTA
ATTGGTACGGTGgaattttttcgaaagtttGTCTTTGAGAGGCTTCTGAG
GGCTAAGTTTCAAATGTATTTCAAATGCCTTcaacaaagatttattatac
actggatatacaagtagcAGATTTTTGTAGATTTCTCGTGtgtagctatg
tccgcagtaatgatattattgttgttcactctccttccctcattaaacga
tttttcgaagcatttttattgcatttctttttgaaaatcactcatccaat
tcccaaaagagacttccTGCGAGAGTCAGATTCTTTCACTTAACTGCTAA
TTacaagtcgttatgacgtttcaagctgtgagaaagatgcaaaagacgtg
ttgtgtataagaaattgaatgttgacaccagaaattttcaaacttcaacc
tatAAAAAAACACCTTGCCACCGCGTGCCTagaaaggattttcataccac
agtggagctaagacattcaagtcttatgtatgttaatttcagctcttctg
gggacagtcttggaaagatatttccaattgaaaattgtgtgtcactataa
gcattttgtctgaatttcttgtctaatgatgattCTCTCACACCAGTTTT
CACAAATGTATCAGgcttggtattctagccttactttcaaactttttttc
tgcaaatgtacaaaatggaagagctagagaacttttttttaaataagact
gataaacacttttaaaaatcagacatcttcgagccACCATGACAGTTGTC
CTTTGCggacaaagctagaacatcaattgttttctgaaacaatgaaaata
caatgatcgctctccatcgttttatgagtcgtttatccagtgtataataa
atctttgccTTCAAGTTGTATATCATTCCAAGCAGAATTCTGAAACCACA
GGTATTCTTCTATAAAAGATGTTGTAGAAAGAAAATTAACAAAGTGGATA
TTTCAACAAGGCTTGAGGCTGCTGTTGGAAATTTCTTATAATTATAGAAT
TGAATCTGTCTCGACAGTTAAAAATGAGAAagcctactctcgggtaccta
atagccgcccccgcccctgctaattaatttttcgaaatttttccacccag
ggcattcttattccaacctccccgcttattgattttttggaaaatgtttc
taaaagttcccttttttgtcctaattctgctgtattagccaccttttcaa
aaagttttccacccagcacatttttattccaacccccccccccNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNTATTGGCCATTTCACACAATTAGTTTGGGATTCTTCAACTAAAT
TGGGTTGCGGTGTTGCTAAAGGAACAGGTGGAACTTACGTCGTTTCCAGA
TATTTACCCGCTGGTAACACACAAGGCCAGTACACACAACATGTTCATGG
GTTAAGCGCGAAAAAAGATCAACACGACCAACCTGCTgttaaagaaaaag
ttttgtGAGCGAGCGACTAACACTGGTTCCTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00011638-exon-sc0000131-1491911889:136445..136493 | TCONS_00011638-exon-sc0000131-1491911889:136445..136493 | Clytia hemisphaerica | exon |
| TCONS_00011638-exon-sc0000131-1510915933:136445..136493 | TCONS_00011638-exon-sc0000131-1510915933:136445..136493 | Clytia hemisphaerica | exon |
| TCONS_00011638-exon-sc0000131-1575043694:136445..136493 | TCONS_00011638-exon-sc0000131-1575043694:136445..136493 | Clytia hemisphaerica | exon |
| TCONS_00011638-exon-sc0000131-1491911889:142813..142927 | TCONS_00011638-exon-sc0000131-1491911889:142813..142927 | Clytia hemisphaerica | exon |
| TCONS_00011638-exon-sc0000131-1510915933:142813..142927 | TCONS_00011638-exon-sc0000131-1510915933:142813..142927 | Clytia hemisphaerica | exon |
| TCONS_00011638-exon-sc0000131-1575043694:142813..142927 | TCONS_00011638-exon-sc0000131-1575043694:142813..142927 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000131 | supercontig | sc0000131:136445..142927 + |
Blast
The following BLAST results are available for this feature:
|
