TCONS_00011633 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011633
Unique NameTCONS_00011633
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length937

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011633 ID=TCONS_00011633|Name=TCONS_00011633|organism=Clytia hemisphaerica|type=transcript|length=937bp
CTTTCGTTCTTGCTCTTCTTTCccgcaaaaaatctttttaacagCATTCC
TATAGATTCCTGAGCGCAGTGTAACAACAAAAGGATTTGTCGTACTGTTT
AcggacgtcagcaaaaattggAGATCTCTCAAGACATGACGCAATTTACA
GTGACAGTTTGCGCATGTGCGTAAAATGAAAATCATAATGGCAGCTGGAA
GATGTATGACAAGAAAAACCAGAGCCATGATGAAAAAAACTTTGGTGACT
TTCTGTTCCATTGCCAGTCGCTTTTTGTCGAATTCtcgttttgatctttt
tgagtTGTCTAAGTGTTGACTTAAAATTGCAGATTGTTTCTTTAGCACTT
TAATCACTTTGAAGTATAATGTTACCAAGGTGATACTACCAACCAGTATG
GCGCTGCTTACAAAGATAGTCAGGTACTGGATGTAGCCAAGAGTCAATCT
TAGGAACGGTACAGAGAGCGAAACGACCCAAATGGTCACGGTTGCGATGA
TACATCGTTTCCAGCTGACTTTAGTTCGATATTTGATGGCATCAGAAACA
GCTAAATATCTGTCGACGGCCAAAGCAACTATGCTGAGCTCACTGGCCAT
GTTTGAAACCAGGGAGGAAATGTGAAGCAAGTCTCCAAGGACTGCTGTCA
TTACCCCTGTATATTCCATATAGTGAATGTACACTGAAATGGGCATTGAT
ACACATCCAACAATCAGATCCGCCACAGCTAAGTTGACCAAAAAGTAGTT
GAACGGTGTGTGCAGCTTGTTAAAAGGATCTTTGATTACCGCAAAAATAA
TGATTCCATTCCCTATGCTTGCTATTAAGGAGATAACGAATGAGGTGACG
CATGTGAACAAGGAGAGCTCTTTTGGTGCCCAAACCTCACCAAAACACAT
CATCTCCGCTGGCATCCtgtttatttgttttattttc
Run BLAST on NCBI

transcript from alignment at sc0000131:44374..45538+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011633 ID=TCONS_00011633|Name=TCONS_00011633|organism=Clytia hemisphaerica|type=transcript|length=1165bp|location=Sequence derived from alignment at sc0000131:44374..45538+ (Clytia hemisphaerica)
CTTTCGTTCTTGCTCTTCTTTCccgcaaaaaatctttttaacagCATTCC
TATAGATTCCTGAGCGCAGTGTAACAACAAAAGGATTTGTCGTACTGTTT
AcggacgtcagcaaaaattggAGATCTCTCAAGACATGACGCAATTTACA
GTGACAGTTTGCGCATGTGCGTAAAATGAAAATCATAATGGCAGCTGGAA
GATGTATGACAAGAAAAACCAGAGCCATGATGAAAAAAACTTTGGTGACT
TTCTGTTCCATTGCCAGTCGCTTTTTGTCGAATTCtcgttttgatctttt
tgagtTGTCTAAGTGTTGACTTAAAATTGCAGATTGTTTCTTTAGCACTT
TAATCACTTTGAAGTATAATGTTACCAAGGTGATACTACCAACCAGTATG
GCGCTGCTTACAAAGATAGTCAGGTACTGGATGTAGCCAAGAGTCAATCT
TAGGAACGGTACAGAGAGCGAAACGACCCAAATGGTCACGGTTGCGATGA
TACATCGTGTCCAGCTGACTTTGGTTCGATATTTGATGGCATCAGAAACA
GCTAAATATCTGTCGACGGCCAAAGCAATTATGCTGAGCTCACTGGCCAT
GTTTGAAACCAGGGAGGAAATGTGAAGCAAGTTTCCAAGGATTACTGTCA
TTACCCCTGTATATTCCATATAGTGAATGTATACTGAAATGGGCATTGAT
ACACAGCCAACAATCAGNGTTGCGATGATACATCGTTTCCAGCTGACTTT
AGTTCGATATTTGATGGCATCAGAAACAGCTAAATATCTGTCGACGGCCA
AAGCAACTATGCTGAGCTCACTGGCCATGTTTGAAACCAGGGAGGAAATG
TGAAGCAAGTCTCCAAGGACTGCTGTCATTACCCCTGTATATTCCATATA
GTGAATGTACACTGAAATGGGCATTGATACACATCCAACAATCAGATCCG
CCACAGCTAAGTTGACCAAAAAGTAGTTGAACGGTGTGTGCAGCTTGTTA
AAAGGATCTTTGATTACCGCAAAAATAATGATTCCATTCCCTATGCTTGC
TATTAAGGAGATAACGAATGAGGTGACGCATGTGAACAAGGAGAGCTCTT
TTGGTGCCCAAACCTCACCAAAACACATCATCTCCGCTGGCATCCtgttt
atttgttttattttc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006528XLOC_006528Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011633-exon-sc0000131-1491911889:44374..44876TCONS_00011633-exon-sc0000131-1491911889:44374..44876Clytia hemisphaericaexon
TCONS_00011633-exon-sc0000131-1510915933:44374..44876TCONS_00011633-exon-sc0000131-1510915933:44374..44876Clytia hemisphaericaexon
TCONS_00011633-exon-sc0000131-1575043694:44374..44876TCONS_00011633-exon-sc0000131-1575043694:44374..44876Clytia hemisphaericaexon
TCONS_00011633-exon-sc0000131-1491911889:45105..45538TCONS_00011633-exon-sc0000131-1491911889:45105..45538Clytia hemisphaericaexon
TCONS_00011633-exon-sc0000131-1510915933:45105..45538TCONS_00011633-exon-sc0000131-1510915933:45105..45538Clytia hemisphaericaexon
TCONS_00011633-exon-sc0000131-1575043694:45105..45538TCONS_00011633-exon-sc0000131-1575043694:45105..45538Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000131supercontigsc0000131:44374..45538 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.146199	0.0475225	0.529255	0.431866	0.316811	0.155797	0.501233	0	0.164266	0.661277	0.987464	0.129824	0.946393	1.30631	10.1431	4.32703	1.92598	4.16219	3.91791	3.55278	0.23559	0.413685	0.167629	0.660398	1.20342	2.33484	0.200469	0	0.32454	0.0551092
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000276GPCR_Rhodpsn
IPR017452GPCR_Rhodpsn_7TM
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
Blast
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BLAST of TCONS_00011633 vs. Swiss-Prot (Human)
Match: 5HT1B (5-hydroxytryptamine receptor 1B OS=Homo sapiens GN=HTR1B PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.372e-17
Identity = 83/332 (25.00%), Postives = 140/332 (42.17%), Query Frame = -2 
Query:   31 VISLIASIGNGIIIFAVIKDPFNKLHTPFNYFLVNLAVADLIVGCVSMPISVYIHYMEYTGVMTAVLGDLLHISSLVSNMASELSIVALAVDRYLAVSDAIKYRTKVSWKRCIIATVTIWVVSLSV---PFLR-------------LTLGYIQYLTIFVSSAILVGSITLVTLYFKVIKVLKKQSAILSQHLDNS-KRSKRE--------------------------------------------FDKKRL--AMEQKVTKVFFIMALVFLVIHLPAAIMIFILRTCANCHCKLRHVLRDLQFLLTSVNSTTNPFVVTLRSGIYRNAVKKI 837
            +I+L  ++ N  +I  V +    KLHTP NY + +LAV DL+V  + MPIS  ++ +     +  V+ D    S +    AS L +  +A+DRY A++DA++Y  K + KR  +    +WV S+S+   PF               +   +I Y       A    ++ L+ LY ++   ++ +S IL Q  + + KR  R                                              +KK+L  A E+K TK   I+   F+V  LP  I+  ++  C +  C     + D    L  +NS  NP + T+ +  ++ A  K+
Sbjct:   58 LITLATTLSNAFVIATVYRT--RKLHTPANYLIASLAVTDLLVSILVMPIST-MYTVTGRWTLGQVVCDFWLSSDITCCTASILHLCVIALDRYWAITDAVEYSAKRTPKRAAVMIALVWVFSISISLPPFFWRQAKAEEEVSECVVNTDHILYTVYSTVGAFYFPTLLLIALYGRI--YVEARSRILKQTPNRTGKRLTRAQLITDSPGSTSSVTSINSRVPDVPSESGSPVYVNQVKVRVSDALLEKKKLMAARERKATKTLGIILGAFIVCWLPFFIISLVMPICKDA-CWFHLAIFDFFTWLGYLNSLINPIIYTMSNEDFKQAFHKL 383
The following BLAST results are available for this feature:
BLAST of TCONS_00011633 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
5HT1B2.372e-1725.005-hydroxytryptamine receptor 1B OS=Homo sapiens GN... [more]
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