TCONS_00011627 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011627
Unique NameTCONS_00011627
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length253

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011627 ID=TCONS_00011627|Name=TCONS_00011627|organism=Clytia hemisphaerica|type=transcript|length=253bp
CACACATAcgcaaaaaattataaaagaaattcgaaatatcatgaatattg
gGCGATATTTAATACCGAAGTACTAAAAAATTTTCGACATACAAAATCCT
GTCAGTTTTCAAGCTCCATCGGTCACATAGACAGGGTAAACAAGATGATA
GAAATGTGTATCATTTTAAATCATTTTGTAGCTATCATATACAGTCAAGg
actattgcaaactaggataAATTATCCTAGTTAGGCTTTTTATCCTAAAT
AGG
Run BLAST on NCBI

transcript from alignment at sc0000130:458947..459199

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011627 ID=TCONS_00011627|Name=TCONS_00011627|organism=Clytia hemisphaerica|type=transcript|length=253bp|location=Sequence derived from alignment at sc0000130:458947..459199 (Clytia hemisphaerica)
CCTATTTAGGATAAAAAGCCTAACTAGGATAATTtatcctagtttgcaat
agtcCTTGACTGTATATGATAGCTACAAAATGATTTAAAATGATACACAT
TTCTATCATCTTGTTTACCCTGTCTATGTGACCGATGGAGCTTGAAAACT
GACAGGATTTTGTATGTCGAAAATTTTTTAGTACTTCGGTATTAAATATC
GCccaatattcatgatatttcgaatttcttttataattttttgcgTATGT
GTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006523XLOC_006523Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011627-exon-sc0000130-1491911889:458947..459199TCONS_00011627-exon-sc0000130-1491911889:458947..459199Clytia hemisphaericaexon
TCONS_00011627-exon-sc0000130-1510915933:458947..459199TCONS_00011627-exon-sc0000130-1510915933:458947..459199Clytia hemisphaericaexon
TCONS_00011627-exon-sc0000130-1575043694:458947..459199TCONS_00011627-exon-sc0000130-1575043694:458947..459199Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000130supercontigsc0000130:458947..459199 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.731279	0	0	0	0	0	0	2.64054	0.616235	0.763307	0	0	0	4.04064	1.24573	0	0.548969	0	2.3321	0.813458	0	1.03461	0.838471	0.762291	0	2.10216	2.00546	1.07014	0.811663	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00011627 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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