TCONS_00011626 (transcript) - C. hemisphaerica

Overview
NameTCONS_00011626
Unique NameTCONS_00011626
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length426

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00011626 ID=TCONS_00011626|Name=TCONS_00011626|organism=Clytia hemisphaerica|type=transcript|length=426bp
cctggggaaaaaagaaattgcccaaaaaagggatgttagCATCCTATAGA
GGATGGAGAAAGTTCTGGAGAAAATTTCAggtagatcttatttttttcct
ataaACAGcatgtatttttgtaacacgaccacgtTATAAAGCGAAATCGC
ACCAATAGCAAACGTCAATCATGAACATAAAACCAAGTCACTTNTTTGCG
AAGAAGTTAGCATAAACGAACATGGTCGTGTAACCCAACCCTTAAAAGGA
AGATTTGCGAAGAAGCTAGCATAAACGAAAAGGGTAGTGTAACCCAACCC
TTAAAAGGAAGATTTGCGAAGAAGTTAGCATAAACGAACATGGTCGTGTA
ACCCAACCCTTAAAAGGAAGATTTGCGAAGAAGCTAGCATAAACGAAAAG
GGTATTGTAACCCAACCcttaaaagg
Run BLAST on NCBI

transcript from alignment at sc0000130:431717..432142

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00011626 ID=TCONS_00011626|Name=TCONS_00011626|organism=Clytia hemisphaerica|type=transcript|length=426bp|location=Sequence derived from alignment at sc0000130:431717..432142 (Clytia hemisphaerica)
ccttttaagGGTTGGGTTACAATACCCTTTTCGTTTATGCTAGCTTCTTC
GCAAATCTTCCTTTTAAGGGTTGGGTTACACGACCATGTTCGTTTATGCT
AACTTCTTCGCAAATCTTCCTTTTAAGGGTTGGGTTACACTACCCTTTTC
GTTTATGCTAGCTTCTTCGCAAATCTTCCTTTTAAGGGTTGGGTTACACG
ACCATGTTCGTTTATGCTAACTTCTTCGCAAANAAGTGACTTGGTTTTAT
GTTCATGATTGACGTTTGCTATTGGTGCGATTTCGCTTTATAacgtggtc
gtgttacaaaaatacatgCTGTttataggaaaaaaataagatctaccTGA
AATTTTCTCCAGAACTTTCTCCATCCTCTATAGGATGctaacatcccttt
tttgggcaatttcttttttccccagg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_006522XLOC_006522Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00011626-exon-sc0000130-1491911889:431717..432142TCONS_00011626-exon-sc0000130-1491911889:431717..432142Clytia hemisphaericaexon
TCONS_00011626-exon-sc0000130-1510915933:431717..432142TCONS_00011626-exon-sc0000130-1510915933:431717..432142Clytia hemisphaericaexon
TCONS_00011626-exon-sc0000130-1575043694:431717..432142TCONS_00011626-exon-sc0000130-1575043694:431717..432142Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000130supercontigsc0000130:431717..432142 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.329936	0	0.185114	1.82674	0	0	0.210195	0	0.138226	0	0	0	0	0.112921	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00011626 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top